* installing *source* package ‘gkwreg’ ...
** this is package ‘gkwreg’ version ‘2.1.1’
** package ‘gkwreg’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/gkwreg/src'
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/TMB/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/TMB/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c gkwreg-predict-resid.cpp -o gkwreg-predict-resid.o
g++ -std=gnu++17 -shared -L/usr/local/lib64 -o gkwreg.so RcppExports.o gkwreg-predict-resid.o -fopenmp -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/gkwreg/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/gkwreg/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/gkwreg/src'
installing to /data/gannet/ripley/R/packages/tests-devel/gkwreg.Rcheck/00LOCK-gkwreg/00new/gkwreg/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
using C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
make[1]: Entering directory '/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/gkwbetareg_compile_20251115125330'
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I"/data/gannet/ripley/R/test-dev/TMB/include" -I"/tmp/RtmpMoiBi5/working_dir/RtmpgCjWZV/RLIBS_8da4048afe498/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_gkwbetareg -DCPPAD_FRAMEWORK -I'/data/gannet/ripley/R/test-dev/TMB/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c /tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/gkwbetareg_compile_20251115125330/gkwbetareg.cpp -o /tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/gkwbetareg_compile_20251115125330/gkwbetareg.o
In file included from /data/gannet/ripley/R/test-dev/TMB/include/TMB.hpp:228,
from /tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/gkwbetareg_compile_20251115125330/gkwbetareg.cpp:17:
/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/gkwbetareg_compile_20251115125330/gkwbetareg.cpp: In instantiation of ‘Type objective_function<Type>::operator()() [with Type = CppAD::AD<double>]’:
/data/gannet/ripley/R/test-dev/TMB/include/tmb_core.hpp:1312:6: required from here
1312 | F(); // Run through user template (modifies reportvector)
| ~^~
/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/gkwbetareg_compile_20251115125330/gkwbetareg.cpp:206:16: warning: unused variable ‘useMeanCache’ [-Wunused-variable]
206 | DATA_INTEGER(useMeanCache); // Ignored - removed caching overhead
| ^~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/TMB/include/tmb_core.hpp:261:32: note: in definition of macro ‘DATA_INTEGER’
261 | #define DATA_INTEGER(name) int name(CppAD::Integer(asVector<Type>( \
| ^~~~
/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/gkwbetareg_compile_20251115125330/gkwbetareg.cpp:208:16: warning: unused variable ‘userChunkSize’ [-Wunused-variable]
208 | DATA_INTEGER(userChunkSize); // Ignored - removed complexity
| ^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/TMB/include/tmb_core.hpp:261:32: note: in definition of macro ‘DATA_INTEGER’
261 | #define DATA_INTEGER(name) int name(CppAD::Integer(asVector<Type>( \
| ^~~~
/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/gkwbetareg_compile_20251115125330/gkwbetareg.cpp: In instantiation of ‘Type objective_function<Type>::operator()() [with Type = double]’:
/data/gannet/ripley/R/test-dev/TMB/include/tmb_core.hpp:2035:7: required from here
2035 | PROTECT( res = asSEXP( pf->operator()() ) );
| ~~~~~~~~~~~~~~^~
/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/gkwbetareg_compile_20251115125330/gkwbetareg.cpp:206:16: warning: unused variable ‘useMeanCache’ [-Wunused-variable]
206 | DATA_INTEGER(useMeanCache); // Ignored - removed caching overhead
| ^~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/TMB/include/tmb_core.hpp:261:32: note: in definition of macro ‘DATA_INTEGER’
261 | #define DATA_INTEGER(name) int name(CppAD::Integer(asVector<Type>( \
| ^~~~
/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/gkwbetareg_compile_20251115125330/gkwbetareg.cpp:208:16: warning: unused variable ‘userChunkSize’ [-Wunused-variable]
208 | DATA_INTEGER(userChunkSize); // Ignored - removed complexity
| ^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/TMB/include/tmb_core.hpp:261:32: note: in definition of macro ‘DATA_INTEGER’
261 | #define DATA_INTEGER(name) int name(CppAD::Integer(asVector<Type>( \
| ^~~~
/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/gkwbetareg_compile_20251115125330/gkwbetareg.cpp: In instantiation of ‘Type objective_function<Type>::operator()() [with Type = CppAD::AD<CppAD::AD<double> >]’:
/data/gannet/ripley/R/test-dev/TMB/include/tmb_core.hpp:917:29: required from ‘Type objective_function<Type>::evalUserTemplate() [with Type = CppAD::AD<CppAD::AD<double> >]’
917 | Type ans=this->operator()();
| ~~~~~~~~~~~~~~~^
/data/gannet/ripley/R/test-dev/TMB/include/tmb_core.hpp:2116:26: required from here
2116 | y[0]=F.evalUserTemplate();
| ~~~~~~~~~~~~~~~~~~^~
/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/gkwbetareg_compile_20251115125330/gkwbetareg.cpp:206:16: warning: unused variable ‘useMeanCache’ [-Wunused-variable]
206 | DATA_INTEGER(useMeanCache); // Ignored - removed caching overhead
| ^~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/TMB/include/tmb_core.hpp:261:32: note: in definition of macro ‘DATA_INTEGER’
261 | #define DATA_INTEGER(name) int name(CppAD::Integer(asVector<Type>( \
| ^~~~
/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/gkwbetareg_compile_20251115125330/gkwbetareg.cpp:208:16: warning: unused variable ‘userChunkSize’ [-Wunused-variable]
208 | DATA_INTEGER(userChunkSize); // Ignored - removed complexity
| ^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/TMB/include/tmb_core.hpp:261:32: note: in definition of macro ‘DATA_INTEGER’
261 | #define DATA_INTEGER(name) int name(CppAD::Integer(asVector<Type>( \
| ^~~~
/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/gkwbetareg_compile_20251115125330/gkwbetareg.cpp: In instantiation of ‘Type objective_function<Type>::operator()() [with Type = CppAD::AD<CppAD::AD<CppAD::AD<double> > >]’:
/data/gannet/ripley/R/test-dev/TMB/include/tmb_core.hpp:917:29: required from ‘Type objective_function<Type>::evalUserTemplate() [with Type = CppAD::AD<CppAD::AD<CppAD::AD<double> > >]’
917 | Type ans=this->operator()();
| ~~~~~~~~~~~~~~~^
/data/gannet/ripley/R/test-dev/TMB/include/tmb_core.hpp:2365:28: required from here
2365 | y[0] = F.evalUserTemplate();
| ~~~~~~~~~~~~~~~~~~^~
/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/gkwbetareg_compile_20251115125330/gkwbetareg.cpp:206:16: warning: unused variable ‘useMeanCache’ [-Wunused-variable]
206 | DATA_INTEGER(useMeanCache); // Ignored - removed caching overhead
| ^~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/TMB/include/tmb_core.hpp:261:32: note: in definition of macro ‘DATA_INTEGER’
261 | #define DATA_INTEGER(name) int name(CppAD::Integer(asVector<Type>( \
| ^~~~
/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/gkwbetareg_compile_20251115125330/gkwbetareg.cpp:208:16: warning: unused variable ‘userChunkSize’ [-Wunused-variable]
208 | DATA_INTEGER(userChunkSize); // Ignored - removed complexity
| ^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/TMB/include/tmb_core.hpp:261:32: note: in definition of macro ‘DATA_INTEGER’
261 | #define DATA_INTEGER(name) int name(CppAD::Integer(asVector<Type>( \
| ^~~~
g++ -std=gnu++17 -shared -L/usr/local/lib64 -o /tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/gkwbetareg_compile_20251115125330/gkwbetareg.so /tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/gkwbetareg_compile_20251115125330/gkwbetareg.o
make[1]: Leaving directory '/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/gkwbetareg_compile_20251115125330'
make[1]: Entering directory '/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/gkwbetareg_compile_20251115125330'
make[1]: Leaving directory '/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/gkwbetareg_compile_20251115125330'
using C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
make[1]: Entering directory '/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/bkwreg_compile_20251115130026'
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I"/data/gannet/ripley/R/test-dev/TMB/include" -I"/tmp/RtmpMoiBi5/working_dir/RtmpgCjWZV/RLIBS_8da4048afe498/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_bkwreg -DCPPAD_FRAMEWORK -I'/data/gannet/ripley/R/test-dev/TMB/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c /tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/bkwreg_compile_20251115130026/bkwreg.cpp -o /tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/bkwreg_compile_20251115130026/bkwreg.o
In file included from /data/gannet/ripley/R/test-dev/TMB/include/TMB.hpp:228,
from /tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/bkwreg_compile_20251115130026/bkwreg.cpp:13:
/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/bkwreg_compile_20251115130026/bkwreg.cpp: In instantiation of ‘Type objective_function<Type>::operator()() [with Type = CppAD::AD<double>]’:
/data/gannet/ripley/R/test-dev/TMB/include/tmb_core.hpp:1312:6: required from here
1312 | F(); // Run through user template (modifies reportvector)
| ~^~
/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/bkwreg_compile_20251115130026/bkwreg.cpp:314:16: warning: unused variable ‘userChunkSize’ [-Wunused-variable]
314 | DATA_INTEGER(userChunkSize); // For compatibility
| ^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/TMB/include/tmb_core.hpp:261:32: note: in definition of macro ‘DATA_INTEGER’
261 | #define DATA_INTEGER(name) int name(CppAD::Integer(asVector<Type>( \
| ^~~~
/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/bkwreg_compile_20251115130026/bkwreg.cpp: In instantiation of ‘Type objective_function<Type>::operator()() [with Type = double]’:
/data/gannet/ripley/R/test-dev/TMB/include/tmb_core.hpp:2035:7: required from here
2035 | PROTECT( res = asSEXP( pf->operator()() ) );
| ~~~~~~~~~~~~~~^~
/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/bkwreg_compile_20251115130026/bkwreg.cpp:314:16: warning: unused variable ‘userChunkSize’ [-Wunused-variable]
314 | DATA_INTEGER(userChunkSize); // For compatibility
| ^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/TMB/include/tmb_core.hpp:261:32: note: in definition of macro ‘DATA_INTEGER’
261 | #define DATA_INTEGER(name) int name(CppAD::Integer(asVector<Type>( \
| ^~~~
/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/bkwreg_compile_20251115130026/bkwreg.cpp: In instantiation of ‘Type objective_function<Type>::operator()() [with Type = CppAD::AD<CppAD::AD<double> >]’:
/data/gannet/ripley/R/test-dev/TMB/include/tmb_core.hpp:917:29: required from ‘Type objective_function<Type>::evalUserTemplate() [with Type = CppAD::AD<CppAD::AD<double> >]’
917 | Type ans=this->operator()();
| ~~~~~~~~~~~~~~~^
/data/gannet/ripley/R/test-dev/TMB/include/tmb_core.hpp:2116:26: required from here
2116 | y[0]=F.evalUserTemplate();
| ~~~~~~~~~~~~~~~~~~^~
/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/bkwreg_compile_20251115130026/bkwreg.cpp:314:16: warning: unused variable ‘userChunkSize’ [-Wunused-variable]
314 | DATA_INTEGER(userChunkSize); // For compatibility
| ^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/TMB/include/tmb_core.hpp:261:32: note: in definition of macro ‘DATA_INTEGER’
261 | #define DATA_INTEGER(name) int name(CppAD::Integer(asVector<Type>( \
| ^~~~
/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/bkwreg_compile_20251115130026/bkwreg.cpp: In instantiation of ‘Type objective_function<Type>::operator()() [with Type = CppAD::AD<CppAD::AD<CppAD::AD<double> > >]’:
/data/gannet/ripley/R/test-dev/TMB/include/tmb_core.hpp:917:29: required from ‘Type objective_function<Type>::evalUserTemplate() [with Type = CppAD::AD<CppAD::AD<CppAD::AD<double> > >]’
917 | Type ans=this->operator()();
| ~~~~~~~~~~~~~~~^
/data/gannet/ripley/R/test-dev/TMB/include/tmb_core.hpp:2365:28: required from here
2365 | y[0] = F.evalUserTemplate();
| ~~~~~~~~~~~~~~~~~~^~
/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/bkwreg_compile_20251115130026/bkwreg.cpp:314:16: warning: unused variable ‘userChunkSize’ [-Wunused-variable]
314 | DATA_INTEGER(userChunkSize); // For compatibility
| ^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/TMB/include/tmb_core.hpp:261:32: note: in definition of macro ‘DATA_INTEGER’
261 | #define DATA_INTEGER(name) int name(CppAD::Integer(asVector<Type>( \
| ^~~~
g++ -std=gnu++17 -shared -L/usr/local/lib64 -o /tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/bkwreg_compile_20251115130026/bkwreg.so /tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/bkwreg_compile_20251115130026/bkwreg.o
make[1]: Leaving directory '/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/bkwreg_compile_20251115130026'
make[1]: Entering directory '/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/bkwreg_compile_20251115130026'
make[1]: Leaving directory '/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/bkwreg_compile_20251115130026'
using C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
make[1]: Entering directory '/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/ekwreg_compile_20251115130432'
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I"/data/gannet/ripley/R/test-dev/TMB/include" -I"/tmp/RtmpMoiBi5/working_dir/RtmpgCjWZV/RLIBS_8da4048afe498/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_ekwreg -DCPPAD_FRAMEWORK -I'/data/gannet/ripley/R/test-dev/TMB/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c /tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/ekwreg_compile_20251115130432/ekwreg.cpp -o /tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/ekwreg_compile_20251115130432/ekwreg.o
In file included from /data/gannet/ripley/R/test-dev/TMB/include/TMB.hpp:228,
from /tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/ekwreg_compile_20251115130432/ekwreg.cpp:20:
/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/ekwreg_compile_20251115130432/ekwreg.cpp: In instantiation of ‘Type objective_function<Type>::operator()() [with Type = CppAD::AD<double>]’:
/data/gannet/ripley/R/test-dev/TMB/include/tmb_core.hpp:1312:6: required from here
1312 | F(); // Run through user template (modifies reportvector)
| ~^~
/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/ekwreg_compile_20251115130432/ekwreg.cpp:318:16: warning: unused variable ‘userChunkSize’ [-Wunused-variable]
318 | DATA_INTEGER(userChunkSize);
| ^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/TMB/include/tmb_core.hpp:261:32: note: in definition of macro ‘DATA_INTEGER’
261 | #define DATA_INTEGER(name) int name(CppAD::Integer(asVector<Type>( \
| ^~~~
/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/ekwreg_compile_20251115130432/ekwreg.cpp: In instantiation of ‘Type objective_function<Type>::operator()() [with Type = double]’:
/data/gannet/ripley/R/test-dev/TMB/include/tmb_core.hpp:2035:7: required from here
2035 | PROTECT( res = asSEXP( pf->operator()() ) );
| ~~~~~~~~~~~~~~^~
/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/ekwreg_compile_20251115130432/ekwreg.cpp:318:16: warning: unused variable ‘userChunkSize’ [-Wunused-variable]
318 | DATA_INTEGER(userChunkSize);
| ^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/TMB/include/tmb_core.hpp:261:32: note: in definition of macro ‘DATA_INTEGER’
261 | #define DATA_INTEGER(name) int name(CppAD::Integer(asVector<Type>( \
| ^~~~
/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/ekwreg_compile_20251115130432/ekwreg.cpp: In instantiation of ‘Type objective_function<Type>::operator()() [with Type = CppAD::AD<CppAD::AD<double> >]’:
/data/gannet/ripley/R/test-dev/TMB/include/tmb_core.hpp:917:29: required from ‘Type objective_function<Type>::evalUserTemplate() [with Type = CppAD::AD<CppAD::AD<double> >]’
917 | Type ans=this->operator()();
| ~~~~~~~~~~~~~~~^
/data/gannet/ripley/R/test-dev/TMB/include/tmb_core.hpp:2116:26: required from here
2116 | y[0]=F.evalUserTemplate();
| ~~~~~~~~~~~~~~~~~~^~
/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/ekwreg_compile_20251115130432/ekwreg.cpp:318:16: warning: unused variable ‘userChunkSize’ [-Wunused-variable]
318 | DATA_INTEGER(userChunkSize);
| ^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/TMB/include/tmb_core.hpp:261:32: note: in definition of macro ‘DATA_INTEGER’
261 | #define DATA_INTEGER(name) int name(CppAD::Integer(asVector<Type>( \
| ^~~~
/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/ekwreg_compile_20251115130432/ekwreg.cpp: In instantiation of ‘Type objective_function<Type>::operator()() [with Type = CppAD::AD<CppAD::AD<CppAD::AD<double> > >]’:
/data/gannet/ripley/R/test-dev/TMB/include/tmb_core.hpp:917:29: required from ‘Type objective_function<Type>::evalUserTemplate() [with Type = CppAD::AD<CppAD::AD<CppAD::AD<double> > >]’
917 | Type ans=this->operator()();
| ~~~~~~~~~~~~~~~^
/data/gannet/ripley/R/test-dev/TMB/include/tmb_core.hpp:2365:28: required from here
2365 | y[0] = F.evalUserTemplate();
| ~~~~~~~~~~~~~~~~~~^~
/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/ekwreg_compile_20251115130432/ekwreg.cpp:318:16: warning: unused variable ‘userChunkSize’ [-Wunused-variable]
318 | DATA_INTEGER(userChunkSize);
| ^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/TMB/include/tmb_core.hpp:261:32: note: in definition of macro ‘DATA_INTEGER’
261 | #define DATA_INTEGER(name) int name(CppAD::Integer(asVector<Type>( \
| ^~~~
g++ -std=gnu++17 -shared -L/usr/local/lib64 -o /tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/ekwreg_compile_20251115130432/ekwreg.so /tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/ekwreg_compile_20251115130432/ekwreg.o
make[1]: Leaving directory '/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/ekwreg_compile_20251115130432'
make[1]: Entering directory '/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/ekwreg_compile_20251115130432'
make[1]: Leaving directory '/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/ekwreg_compile_20251115130432'
using C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
make[1]: Entering directory '/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/gkwreg_compile_20251115130735'
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I"/data/gannet/ripley/R/test-dev/TMB/include" -I"/tmp/RtmpMoiBi5/working_dir/RtmpgCjWZV/RLIBS_8da4048afe498/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_gkwreg -DCPPAD_FRAMEWORK -I'/data/gannet/ripley/R/test-dev/TMB/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c /tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/gkwreg_compile_20251115130735/gkwreg.cpp -o /tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/gkwreg_compile_20251115130735/gkwreg.o
In file included from /data/gannet/ripley/R/test-dev/TMB/include/TMB.hpp:228,
from /tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/gkwreg_compile_20251115130735/gkwreg.cpp:29:
/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/gkwreg_compile_20251115130735/gkwreg.cpp: In instantiation of ‘Type objective_function<Type>::operator()() [with Type = CppAD::AD<double>]’:
/data/gannet/ripley/R/test-dev/TMB/include/tmb_core.hpp:1312:6: required from here
1312 | F(); // Run through user template (modifies reportvector)
| ~^~
/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/gkwreg_compile_20251115130735/gkwreg.cpp:345:16: warning: unused variable ‘userChunkSize’ [-Wunused-variable]
345 | DATA_INTEGER(userChunkSize); // For compatibility
| ^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/TMB/include/tmb_core.hpp:261:32: note: in definition of macro ‘DATA_INTEGER’
261 | #define DATA_INTEGER(name) int name(CppAD::Integer(asVector<Type>( \
| ^~~~
/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/gkwreg_compile_20251115130735/gkwreg.cpp: In instantiation of ‘Type objective_function<Type>::operator()() [with Type = double]’:
/data/gannet/ripley/R/test-dev/TMB/include/tmb_core.hpp:2035:7: required from here
2035 | PROTECT( res = asSEXP( pf->operator()() ) );
| ~~~~~~~~~~~~~~^~
/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/gkwreg_compile_20251115130735/gkwreg.cpp:345:16: warning: unused variable ‘userChunkSize’ [-Wunused-variable]
345 | DATA_INTEGER(userChunkSize); // For compatibility
| ^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/TMB/include/tmb_core.hpp:261:32: note: in definition of macro ‘DATA_INTEGER’
261 | #define DATA_INTEGER(name) int name(CppAD::Integer(asVector<Type>( \
| ^~~~
/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/gkwreg_compile_20251115130735/gkwreg.cpp: In instantiation of ‘Type objective_function<Type>::operator()() [with Type = CppAD::AD<CppAD::AD<double> >]’:
/data/gannet/ripley/R/test-dev/TMB/include/tmb_core.hpp:917:29: required from ‘Type objective_function<Type>::evalUserTemplate() [with Type = CppAD::AD<CppAD::AD<double> >]’
917 | Type ans=this->operator()();
| ~~~~~~~~~~~~~~~^
/data/gannet/ripley/R/test-dev/TMB/include/tmb_core.hpp:2116:26: required from here
2116 | y[0]=F.evalUserTemplate();
| ~~~~~~~~~~~~~~~~~~^~
/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/gkwreg_compile_20251115130735/gkwreg.cpp:345:16: warning: unused variable ‘userChunkSize’ [-Wunused-variable]
345 | DATA_INTEGER(userChunkSize); // For compatibility
| ^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/TMB/include/tmb_core.hpp:261:32: note: in definition of macro ‘DATA_INTEGER’
261 | #define DATA_INTEGER(name) int name(CppAD::Integer(asVector<Type>( \
| ^~~~
/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/gkwreg_compile_20251115130735/gkwreg.cpp: In instantiation of ‘Type objective_function<Type>::operator()() [with Type = CppAD::AD<CppAD::AD<CppAD::AD<double> > >]’:
/data/gannet/ripley/R/test-dev/TMB/include/tmb_core.hpp:917:29: required from ‘Type objective_function<Type>::evalUserTemplate() [with Type = CppAD::AD<CppAD::AD<CppAD::AD<double> > >]’
917 | Type ans=this->operator()();
| ~~~~~~~~~~~~~~~^
/data/gannet/ripley/R/test-dev/TMB/include/tmb_core.hpp:2365:28: required from here
2365 | y[0] = F.evalUserTemplate();
| ~~~~~~~~~~~~~~~~~~^~
/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/gkwreg_compile_20251115130735/gkwreg.cpp:345:16: warning: unused variable ‘userChunkSize’ [-Wunused-variable]
345 | DATA_INTEGER(userChunkSize); // For compatibility
| ^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/TMB/include/tmb_core.hpp:261:32: note: in definition of macro ‘DATA_INTEGER’
261 | #define DATA_INTEGER(name) int name(CppAD::Integer(asVector<Type>( \
| ^~~~
g++ -std=gnu++17 -shared -L/usr/local/lib64 -o /tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/gkwreg_compile_20251115130735/gkwreg.so /tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/gkwreg_compile_20251115130735/gkwreg.o
make[1]: Leaving directory '/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/gkwreg_compile_20251115130735'
make[1]: Entering directory '/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/gkwreg_compile_20251115130735'
make[1]: Leaving directory '/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/gkwreg_compile_20251115130735'
using C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
make[1]: Entering directory '/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/kkwreg_compile_20251115131014'
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I"/data/gannet/ripley/R/test-dev/TMB/include" -I"/tmp/RtmpMoiBi5/working_dir/RtmpgCjWZV/RLIBS_8da4048afe498/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_kkwreg -DCPPAD_FRAMEWORK -I'/data/gannet/ripley/R/test-dev/TMB/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c /tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/kkwreg_compile_20251115131014/kkwreg.cpp -o /tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/kkwreg_compile_20251115131014/kkwreg.o
In file included from /data/gannet/ripley/R/test-dev/TMB/include/TMB.hpp:228,
from /tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/kkwreg_compile_20251115131014/kkwreg.cpp:17:
/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/kkwreg_compile_20251115131014/kkwreg.cpp: In instantiation of ‘Type objective_function<Type>::operator()() [with Type = CppAD::AD<double>]’:
/data/gannet/ripley/R/test-dev/TMB/include/tmb_core.hpp:1312:6: required from here
1312 | F(); // Run through user template (modifies reportvector)
| ~^~
/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/kkwreg_compile_20251115131014/kkwreg.cpp:315:16: warning: unused variable ‘userChunkSize’ [-Wunused-variable]
315 | DATA_INTEGER(userChunkSize); // For compatibility
| ^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/TMB/include/tmb_core.hpp:261:32: note: in definition of macro ‘DATA_INTEGER’
261 | #define DATA_INTEGER(name) int name(CppAD::Integer(asVector<Type>( \
| ^~~~
/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/kkwreg_compile_20251115131014/kkwreg.cpp: In instantiation of ‘Type objective_function<Type>::operator()() [with Type = double]’:
/data/gannet/ripley/R/test-dev/TMB/include/tmb_core.hpp:2035:7: required from here
2035 | PROTECT( res = asSEXP( pf->operator()() ) );
| ~~~~~~~~~~~~~~^~
/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/kkwreg_compile_20251115131014/kkwreg.cpp:315:16: warning: unused variable ‘userChunkSize’ [-Wunused-variable]
315 | DATA_INTEGER(userChunkSize); // For compatibility
| ^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/TMB/include/tmb_core.hpp:261:32: note: in definition of macro ‘DATA_INTEGER’
261 | #define DATA_INTEGER(name) int name(CppAD::Integer(asVector<Type>( \
| ^~~~
/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/kkwreg_compile_20251115131014/kkwreg.cpp: In instantiation of ‘Type objective_function<Type>::operator()() [with Type = CppAD::AD<CppAD::AD<double> >]’:
/data/gannet/ripley/R/test-dev/TMB/include/tmb_core.hpp:917:29: required from ‘Type objective_function<Type>::evalUserTemplate() [with Type = CppAD::AD<CppAD::AD<double> >]’
917 | Type ans=this->operator()();
| ~~~~~~~~~~~~~~~^
/data/gannet/ripley/R/test-dev/TMB/include/tmb_core.hpp:2116:26: required from here
2116 | y[0]=F.evalUserTemplate();
| ~~~~~~~~~~~~~~~~~~^~
/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/kkwreg_compile_20251115131014/kkwreg.cpp:315:16: warning: unused variable ‘userChunkSize’ [-Wunused-variable]
315 | DATA_INTEGER(userChunkSize); // For compatibility
| ^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/TMB/include/tmb_core.hpp:261:32: note: in definition of macro ‘DATA_INTEGER’
261 | #define DATA_INTEGER(name) int name(CppAD::Integer(asVector<Type>( \
| ^~~~
/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/kkwreg_compile_20251115131014/kkwreg.cpp: In instantiation of ‘Type objective_function<Type>::operator()() [with Type = CppAD::AD<CppAD::AD<CppAD::AD<double> > >]’:
/data/gannet/ripley/R/test-dev/TMB/include/tmb_core.hpp:917:29: required from ‘Type objective_function<Type>::evalUserTemplate() [with Type = CppAD::AD<CppAD::AD<CppAD::AD<double> > >]’
917 | Type ans=this->operator()();
| ~~~~~~~~~~~~~~~^
/data/gannet/ripley/R/test-dev/TMB/include/tmb_core.hpp:2365:28: required from here
2365 | y[0] = F.evalUserTemplate();
| ~~~~~~~~~~~~~~~~~~^~
/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/kkwreg_compile_20251115131014/kkwreg.cpp:315:16: warning: unused variable ‘userChunkSize’ [-Wunused-variable]
315 | DATA_INTEGER(userChunkSize); // For compatibility
| ^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/TMB/include/tmb_core.hpp:261:32: note: in definition of macro ‘DATA_INTEGER’
261 | #define DATA_INTEGER(name) int name(CppAD::Integer(asVector<Type>( \
| ^~~~
g++ -std=gnu++17 -shared -L/usr/local/lib64 -o /tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/kkwreg_compile_20251115131014/kkwreg.so /tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/kkwreg_compile_20251115131014/kkwreg.o
make[1]: Leaving directory '/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/kkwreg_compile_20251115131014'
make[1]: Entering directory '/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/kkwreg_compile_20251115131014'
make[1]: Leaving directory '/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/kkwreg_compile_20251115131014'
using C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
make[1]: Entering directory '/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/kwreg_compile_20251115131254'
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I"/data/gannet/ripley/R/test-dev/TMB/include" -I"/tmp/RtmpMoiBi5/working_dir/RtmpgCjWZV/RLIBS_8da4048afe498/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_kwreg -DCPPAD_FRAMEWORK -I'/data/gannet/ripley/R/test-dev/TMB/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c /tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/kwreg_compile_20251115131254/kwreg.cpp -o /tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/kwreg_compile_20251115131254/kwreg.o
In file included from /data/gannet/ripley/R/test-dev/TMB/include/TMB.hpp:228,
from /tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/kwreg_compile_20251115131254/kwreg.cpp:20:
/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/kwreg_compile_20251115131254/kwreg.cpp: In instantiation of ‘Type objective_function<Type>::operator()() [with Type = CppAD::AD<double>]’:
/data/gannet/ripley/R/test-dev/TMB/include/tmb_core.hpp:1312:6: required from here
1312 | F(); // Run through user template (modifies reportvector)
| ~^~
/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/kwreg_compile_20251115131254/kwreg.cpp:290:16: warning: unused variable ‘userChunkSize’ [-Wunused-variable]
290 | DATA_INTEGER(userChunkSize); // For compatibility
| ^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/TMB/include/tmb_core.hpp:261:32: note: in definition of macro ‘DATA_INTEGER’
261 | #define DATA_INTEGER(name) int name(CppAD::Integer(asVector<Type>( \
| ^~~~
/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/kwreg_compile_20251115131254/kwreg.cpp: In instantiation of ‘Type objective_function<Type>::operator()() [with Type = double]’:
/data/gannet/ripley/R/test-dev/TMB/include/tmb_core.hpp:2035:7: required from here
2035 | PROTECT( res = asSEXP( pf->operator()() ) );
| ~~~~~~~~~~~~~~^~
/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/kwreg_compile_20251115131254/kwreg.cpp:290:16: warning: unused variable ‘userChunkSize’ [-Wunused-variable]
290 | DATA_INTEGER(userChunkSize); // For compatibility
| ^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/TMB/include/tmb_core.hpp:261:32: note: in definition of macro ‘DATA_INTEGER’
261 | #define DATA_INTEGER(name) int name(CppAD::Integer(asVector<Type>( \
| ^~~~
/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/kwreg_compile_20251115131254/kwreg.cpp: In instantiation of ‘Type objective_function<Type>::operator()() [with Type = CppAD::AD<CppAD::AD<double> >]’:
/data/gannet/ripley/R/test-dev/TMB/include/tmb_core.hpp:917:29: required from ‘Type objective_function<Type>::evalUserTemplate() [with Type = CppAD::AD<CppAD::AD<double> >]’
917 | Type ans=this->operator()();
| ~~~~~~~~~~~~~~~^
/data/gannet/ripley/R/test-dev/TMB/include/tmb_core.hpp:2116:26: required from here
2116 | y[0]=F.evalUserTemplate();
| ~~~~~~~~~~~~~~~~~~^~
/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/kwreg_compile_20251115131254/kwreg.cpp:290:16: warning: unused variable ‘userChunkSize’ [-Wunused-variable]
290 | DATA_INTEGER(userChunkSize); // For compatibility
| ^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/TMB/include/tmb_core.hpp:261:32: note: in definition of macro ‘DATA_INTEGER’
261 | #define DATA_INTEGER(name) int name(CppAD::Integer(asVector<Type>( \
| ^~~~
/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/kwreg_compile_20251115131254/kwreg.cpp: In instantiation of ‘Type objective_function<Type>::operator()() [with Type = CppAD::AD<CppAD::AD<CppAD::AD<double> > >]’:
/data/gannet/ripley/R/test-dev/TMB/include/tmb_core.hpp:917:29: required from ‘Type objective_function<Type>::evalUserTemplate() [with Type = CppAD::AD<CppAD::AD<CppAD::AD<double> > >]’
917 | Type ans=this->operator()();
| ~~~~~~~~~~~~~~~^
/data/gannet/ripley/R/test-dev/TMB/include/tmb_core.hpp:2365:28: required from here
2365 | y[0] = F.evalUserTemplate();
| ~~~~~~~~~~~~~~~~~~^~
/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/kwreg_compile_20251115131254/kwreg.cpp:290:16: warning: unused variable ‘userChunkSize’ [-Wunused-variable]
290 | DATA_INTEGER(userChunkSize); // For compatibility
| ^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/TMB/include/tmb_core.hpp:261:32: note: in definition of macro ‘DATA_INTEGER’
261 | #define DATA_INTEGER(name) int name(CppAD::Integer(asVector<Type>( \
| ^~~~
g++ -std=gnu++17 -shared -L/usr/local/lib64 -o /tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/kwreg_compile_20251115131254/kwreg.so /tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/kwreg_compile_20251115131254/kwreg.o
make[1]: Leaving directory '/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/kwreg_compile_20251115131254'
make[1]: Entering directory '/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/kwreg_compile_20251115131254'
make[1]: Leaving directory '/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/kwreg_compile_20251115131254'
using C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
make[1]: Entering directory '/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/mcreg_compile_20251115131512'
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I"/data/gannet/ripley/R/test-dev/TMB/include" -I"/tmp/RtmpMoiBi5/working_dir/RtmpgCjWZV/RLIBS_8da4048afe498/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_mcreg -DCPPAD_FRAMEWORK -I'/data/gannet/ripley/R/test-dev/TMB/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c /tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/mcreg_compile_20251115131512/mcreg.cpp -o /tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/mcreg_compile_20251115131512/mcreg.o
In file included from /data/gannet/ripley/R/test-dev/TMB/include/TMB.hpp:228,
from /tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/mcreg_compile_20251115131512/mcreg.cpp:19:
/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/mcreg_compile_20251115131512/mcreg.cpp: In instantiation of ‘Type objective_function<Type>::operator()() [with Type = CppAD::AD<double>]’:
/data/gannet/ripley/R/test-dev/TMB/include/tmb_core.hpp:1312:6: required from here
1312 | F(); // Run through user template (modifies reportvector)
| ~^~
/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/mcreg_compile_20251115131512/mcreg.cpp:262:16: warning: unused variable ‘userChunkSize’ [-Wunused-variable]
262 | DATA_INTEGER(userChunkSize); // Restored (but not used in simple loop)
| ^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/TMB/include/tmb_core.hpp:261:32: note: in definition of macro ‘DATA_INTEGER’
261 | #define DATA_INTEGER(name) int name(CppAD::Integer(asVector<Type>( \
| ^~~~
/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/mcreg_compile_20251115131512/mcreg.cpp: In instantiation of ‘Type objective_function<Type>::operator()() [with Type = double]’:
/data/gannet/ripley/R/test-dev/TMB/include/tmb_core.hpp:2035:7: required from here
2035 | PROTECT( res = asSEXP( pf->operator()() ) );
| ~~~~~~~~~~~~~~^~
/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/mcreg_compile_20251115131512/mcreg.cpp:262:16: warning: unused variable ‘userChunkSize’ [-Wunused-variable]
262 | DATA_INTEGER(userChunkSize); // Restored (but not used in simple loop)
| ^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/TMB/include/tmb_core.hpp:261:32: note: in definition of macro ‘DATA_INTEGER’
261 | #define DATA_INTEGER(name) int name(CppAD::Integer(asVector<Type>( \
| ^~~~
/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/mcreg_compile_20251115131512/mcreg.cpp: In instantiation of ‘Type objective_function<Type>::operator()() [with Type = CppAD::AD<CppAD::AD<double> >]’:
/data/gannet/ripley/R/test-dev/TMB/include/tmb_core.hpp:917:29: required from ‘Type objective_function<Type>::evalUserTemplate() [with Type = CppAD::AD<CppAD::AD<double> >]’
917 | Type ans=this->operator()();
| ~~~~~~~~~~~~~~~^
/data/gannet/ripley/R/test-dev/TMB/include/tmb_core.hpp:2116:26: required from here
2116 | y[0]=F.evalUserTemplate();
| ~~~~~~~~~~~~~~~~~~^~
/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/mcreg_compile_20251115131512/mcreg.cpp:262:16: warning: unused variable ‘userChunkSize’ [-Wunused-variable]
262 | DATA_INTEGER(userChunkSize); // Restored (but not used in simple loop)
| ^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/TMB/include/tmb_core.hpp:261:32: note: in definition of macro ‘DATA_INTEGER’
261 | #define DATA_INTEGER(name) int name(CppAD::Integer(asVector<Type>( \
| ^~~~
/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/mcreg_compile_20251115131512/mcreg.cpp: In instantiation of ‘Type objective_function<Type>::operator()() [with Type = CppAD::AD<CppAD::AD<CppAD::AD<double> > >]’:
/data/gannet/ripley/R/test-dev/TMB/include/tmb_core.hpp:917:29: required from ‘Type objective_function<Type>::evalUserTemplate() [with Type = CppAD::AD<CppAD::AD<CppAD::AD<double> > >]’
917 | Type ans=this->operator()();
| ~~~~~~~~~~~~~~~^
/data/gannet/ripley/R/test-dev/TMB/include/tmb_core.hpp:2365:28: required from here
2365 | y[0] = F.evalUserTemplate();
| ~~~~~~~~~~~~~~~~~~^~
/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/mcreg_compile_20251115131512/mcreg.cpp:262:16: warning: unused variable ‘userChunkSize’ [-Wunused-variable]
262 | DATA_INTEGER(userChunkSize); // Restored (but not used in simple loop)
| ^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/TMB/include/tmb_core.hpp:261:32: note: in definition of macro ‘DATA_INTEGER’
261 | #define DATA_INTEGER(name) int name(CppAD::Integer(asVector<Type>( \
| ^~~~
g++ -std=gnu++17 -shared -L/usr/local/lib64 -o /tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/mcreg_compile_20251115131512/mcreg.so /tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/mcreg_compile_20251115131512/mcreg.o
make[1]: Leaving directory '/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/mcreg_compile_20251115131512'
make[1]: Entering directory '/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/mcreg_compile_20251115131512'
make[1]: Leaving directory '/tmp/RtmpMoiBi5/working_dir/Rtmpi6Nqfr/mcreg_compile_20251115131512'
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (gkwreg)