Install log for 'gkwreg'

* installing *source* package ‘gkwreg’ ...
** this is package ‘gkwreg’ version ‘1.0.10’
** package ‘gkwreg’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/gkwreg/src'
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c gkwgetstartvalues.cpp -o gkwgetstartvalues.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c gkwmle.cpp -o gkwmle.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c gkwreg-predict-resid.cpp -o gkwreg-predict-resid.o
g++ -std=gnu++17 -shared -L/usr/local/lib64 -o gkwreg.so RcppExports.o gkwgetstartvalues.o gkwmle.o gkwreg-predict-resid.o -fopenmp -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/gkwreg/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/gkwreg/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/gkwreg/src'
installing to /data/gannet/ripley/R/packages/tests-devel/gkwreg.Rcheck/00LOCK-gkwreg/00new/gkwreg/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
using C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
make[1]: Entering directory '/tmp/Rtmp8ZUh2R/working_dir/Rtmp5LLJXo/gkwbetareg_compile_20250807141015'
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I"/data/gannet/ripley/R/test-dev/TMB/include" -I"/tmp/Rtmp8ZUh2R/working_dir/RtmpwPr7vG/RLIBS_1c02911997c900/RcppEigen/include"   -DTMB_EIGEN_DISABLE_WARNINGS   -DTMB_LIB_INIT=R_init_gkwbetareg  -DCPPAD_FRAMEWORK -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c /tmp/Rtmp8ZUh2R/working_dir/Rtmp5LLJXo/gkwbetareg_compile_20250807141015/gkwbetareg.cpp -o /tmp/Rtmp8ZUh2R/working_dir/Rtmp5LLJXo/gkwbetareg_compile_20250807141015/gkwbetareg.o
g++ -std=gnu++17 -shared -L/usr/local/lib64 -o /tmp/Rtmp8ZUh2R/working_dir/Rtmp5LLJXo/gkwbetareg_compile_20250807141015/gkwbetareg.so /tmp/Rtmp8ZUh2R/working_dir/Rtmp5LLJXo/gkwbetareg_compile_20250807141015/gkwbetareg.o
make[1]: Leaving directory '/tmp/Rtmp8ZUh2R/working_dir/Rtmp5LLJXo/gkwbetareg_compile_20250807141015'
make[1]: Entering directory '/tmp/Rtmp8ZUh2R/working_dir/Rtmp5LLJXo/gkwbetareg_compile_20250807141015'
make[1]: Leaving directory '/tmp/Rtmp8ZUh2R/working_dir/Rtmp5LLJXo/gkwbetareg_compile_20250807141015'
using C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
make[1]: Entering directory '/tmp/Rtmp8ZUh2R/working_dir/Rtmp5LLJXo/bkwreg_compile_20250807141246'
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I"/data/gannet/ripley/R/test-dev/TMB/include" -I"/tmp/Rtmp8ZUh2R/working_dir/RtmpwPr7vG/RLIBS_1c02911997c900/RcppEigen/include"   -DTMB_EIGEN_DISABLE_WARNINGS   -DTMB_LIB_INIT=R_init_bkwreg  -DCPPAD_FRAMEWORK -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c /tmp/Rtmp8ZUh2R/working_dir/Rtmp5LLJXo/bkwreg_compile_20250807141246/bkwreg.cpp -o /tmp/Rtmp8ZUh2R/working_dir/Rtmp5LLJXo/bkwreg_compile_20250807141246/bkwreg.o
g++ -std=gnu++17 -shared -L/usr/local/lib64 -o /tmp/Rtmp8ZUh2R/working_dir/Rtmp5LLJXo/bkwreg_compile_20250807141246/bkwreg.so /tmp/Rtmp8ZUh2R/working_dir/Rtmp5LLJXo/bkwreg_compile_20250807141246/bkwreg.o
make[1]: Leaving directory '/tmp/Rtmp8ZUh2R/working_dir/Rtmp5LLJXo/bkwreg_compile_20250807141246'
make[1]: Entering directory '/tmp/Rtmp8ZUh2R/working_dir/Rtmp5LLJXo/bkwreg_compile_20250807141246'
make[1]: Leaving directory '/tmp/Rtmp8ZUh2R/working_dir/Rtmp5LLJXo/bkwreg_compile_20250807141246'
using C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
make[1]: Entering directory '/tmp/Rtmp8ZUh2R/working_dir/Rtmp5LLJXo/ekwreg_compile_20250807141524'
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I"/data/gannet/ripley/R/test-dev/TMB/include" -I"/tmp/Rtmp8ZUh2R/working_dir/RtmpwPr7vG/RLIBS_1c02911997c900/RcppEigen/include"   -DTMB_EIGEN_DISABLE_WARNINGS   -DTMB_LIB_INIT=R_init_ekwreg  -DCPPAD_FRAMEWORK -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c /tmp/Rtmp8ZUh2R/working_dir/Rtmp5LLJXo/ekwreg_compile_20250807141524/ekwreg.cpp -o /tmp/Rtmp8ZUh2R/working_dir/Rtmp5LLJXo/ekwreg_compile_20250807141524/ekwreg.o
g++ -std=gnu++17 -shared -L/usr/local/lib64 -o /tmp/Rtmp8ZUh2R/working_dir/Rtmp5LLJXo/ekwreg_compile_20250807141524/ekwreg.so /tmp/Rtmp8ZUh2R/working_dir/Rtmp5LLJXo/ekwreg_compile_20250807141524/ekwreg.o
make[1]: Leaving directory '/tmp/Rtmp8ZUh2R/working_dir/Rtmp5LLJXo/ekwreg_compile_20250807141524'
make[1]: Entering directory '/tmp/Rtmp8ZUh2R/working_dir/Rtmp5LLJXo/ekwreg_compile_20250807141524'
make[1]: Leaving directory '/tmp/Rtmp8ZUh2R/working_dir/Rtmp5LLJXo/ekwreg_compile_20250807141524'
using C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
make[1]: Entering directory '/tmp/Rtmp8ZUh2R/working_dir/Rtmp5LLJXo/gkwmletmb_compile_20250807141755'
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I"/data/gannet/ripley/R/test-dev/TMB/include" -I"/tmp/Rtmp8ZUh2R/working_dir/RtmpwPr7vG/RLIBS_1c02911997c900/RcppEigen/include"   -DTMB_EIGEN_DISABLE_WARNINGS   -DTMB_LIB_INIT=R_init_gkwmletmb  -DCPPAD_FRAMEWORK -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c /tmp/Rtmp8ZUh2R/working_dir/Rtmp5LLJXo/gkwmletmb_compile_20250807141755/gkwmletmb.cpp -o /tmp/Rtmp8ZUh2R/working_dir/Rtmp5LLJXo/gkwmletmb_compile_20250807141755/gkwmletmb.o
g++ -std=gnu++17 -shared -L/usr/local/lib64 -o /tmp/Rtmp8ZUh2R/working_dir/Rtmp5LLJXo/gkwmletmb_compile_20250807141755/gkwmletmb.so /tmp/Rtmp8ZUh2R/working_dir/Rtmp5LLJXo/gkwmletmb_compile_20250807141755/gkwmletmb.o -fopenmp
make[1]: Leaving directory '/tmp/Rtmp8ZUh2R/working_dir/Rtmp5LLJXo/gkwmletmb_compile_20250807141755'
make[1]: Entering directory '/tmp/Rtmp8ZUh2R/working_dir/Rtmp5LLJXo/gkwmletmb_compile_20250807141755'
make[1]: Leaving directory '/tmp/Rtmp8ZUh2R/working_dir/Rtmp5LLJXo/gkwmletmb_compile_20250807141755'
using C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
make[1]: Entering directory '/tmp/Rtmp8ZUh2R/working_dir/Rtmp5LLJXo/gkwreg_compile_20250807142024'
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I"/data/gannet/ripley/R/test-dev/TMB/include" -I"/tmp/Rtmp8ZUh2R/working_dir/RtmpwPr7vG/RLIBS_1c02911997c900/RcppEigen/include"   -DTMB_EIGEN_DISABLE_WARNINGS   -DTMB_LIB_INIT=R_init_gkwreg  -DCPPAD_FRAMEWORK -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c /tmp/Rtmp8ZUh2R/working_dir/Rtmp5LLJXo/gkwreg_compile_20250807142024/gkwreg.cpp -o /tmp/Rtmp8ZUh2R/working_dir/Rtmp5LLJXo/gkwreg_compile_20250807142024/gkwreg.o
g++ -std=gnu++17 -shared -L/usr/local/lib64 -o /tmp/Rtmp8ZUh2R/working_dir/Rtmp5LLJXo/gkwreg_compile_20250807142024/gkwreg.so /tmp/Rtmp8ZUh2R/working_dir/Rtmp5LLJXo/gkwreg_compile_20250807142024/gkwreg.o
make[1]: Leaving directory '/tmp/Rtmp8ZUh2R/working_dir/Rtmp5LLJXo/gkwreg_compile_20250807142024'
make[1]: Entering directory '/tmp/Rtmp8ZUh2R/working_dir/Rtmp5LLJXo/gkwreg_compile_20250807142024'
make[1]: Leaving directory '/tmp/Rtmp8ZUh2R/working_dir/Rtmp5LLJXo/gkwreg_compile_20250807142024'
using C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
make[1]: Entering directory '/tmp/Rtmp8ZUh2R/working_dir/Rtmp5LLJXo/kwreg_compile_20250807142312'
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I"/data/gannet/ripley/R/test-dev/TMB/include" -I"/tmp/Rtmp8ZUh2R/working_dir/RtmpwPr7vG/RLIBS_1c02911997c900/RcppEigen/include"   -DTMB_EIGEN_DISABLE_WARNINGS   -DTMB_LIB_INIT=R_init_kwreg  -DCPPAD_FRAMEWORK -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c /tmp/Rtmp8ZUh2R/working_dir/Rtmp5LLJXo/kwreg_compile_20250807142312/kwreg.cpp -o /tmp/Rtmp8ZUh2R/working_dir/Rtmp5LLJXo/kwreg_compile_20250807142312/kwreg.o
g++ -std=gnu++17 -shared -L/usr/local/lib64 -o /tmp/Rtmp8ZUh2R/working_dir/Rtmp5LLJXo/kwreg_compile_20250807142312/kwreg.so /tmp/Rtmp8ZUh2R/working_dir/Rtmp5LLJXo/kwreg_compile_20250807142312/kwreg.o
make[1]: Leaving directory '/tmp/Rtmp8ZUh2R/working_dir/Rtmp5LLJXo/kwreg_compile_20250807142312'
make[1]: Entering directory '/tmp/Rtmp8ZUh2R/working_dir/Rtmp5LLJXo/kwreg_compile_20250807142312'
make[1]: Leaving directory '/tmp/Rtmp8ZUh2R/working_dir/Rtmp5LLJXo/kwreg_compile_20250807142312'
using C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
make[1]: Entering directory '/tmp/Rtmp8ZUh2R/working_dir/Rtmp5LLJXo/mcreg_compile_20250807142546'
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I"/data/gannet/ripley/R/test-dev/TMB/include" -I"/tmp/Rtmp8ZUh2R/working_dir/RtmpwPr7vG/RLIBS_1c02911997c900/RcppEigen/include"   -DTMB_EIGEN_DISABLE_WARNINGS   -DTMB_LIB_INIT=R_init_mcreg  -DCPPAD_FRAMEWORK -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c /tmp/Rtmp8ZUh2R/working_dir/Rtmp5LLJXo/mcreg_compile_20250807142546/mcreg.cpp -o /tmp/Rtmp8ZUh2R/working_dir/Rtmp5LLJXo/mcreg_compile_20250807142546/mcreg.o
g++ -std=gnu++17 -shared -L/usr/local/lib64 -o /tmp/Rtmp8ZUh2R/working_dir/Rtmp5LLJXo/mcreg_compile_20250807142546/mcreg.so /tmp/Rtmp8ZUh2R/working_dir/Rtmp5LLJXo/mcreg_compile_20250807142546/mcreg.o
make[1]: Leaving directory '/tmp/Rtmp8ZUh2R/working_dir/Rtmp5LLJXo/mcreg_compile_20250807142546'
make[1]: Entering directory '/tmp/Rtmp8ZUh2R/working_dir/Rtmp5LLJXo/mcreg_compile_20250807142546'
make[1]: Leaving directory '/tmp/Rtmp8ZUh2R/working_dir/Rtmp5LLJXo/mcreg_compile_20250807142546'
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (gkwreg)