Install log for 'gkwreg'

* installing *source* package ‘gkwreg’ ...
** this is package ‘gkwreg’ version ‘1.0.10’
** package ‘gkwreg’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/gkwreg/src'
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c gkwgetstartvalues.cpp -o gkwgetstartvalues.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c gkwmle.cpp -o gkwmle.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c gkwreg-predict-resid.cpp -o gkwreg-predict-resid.o
g++ -std=gnu++17 -shared -L/usr/local/lib64 -o gkwreg.so RcppExports.o gkwgetstartvalues.o gkwmle.o gkwreg-predict-resid.o -fopenmp -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/gkwreg/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/gkwreg/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/gkwreg/src'
installing to /data/gannet/ripley/R/packages/tests-devel/gkwreg.Rcheck/00LOCK-gkwreg/00new/gkwreg/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
using C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
make[1]: Entering directory '/tmp/RtmpUAp1dL/working_dir/Rtmpdh6qRl/gkwbetareg_compile_20250923021323'
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I"/data/gannet/ripley/R/test-dev/TMB/include" -I"/tmp/RtmpUAp1dL/working_dir/Rtmp5dC1jC/RLIBS_311c8e059a23/RcppEigen/include"   -DTMB_EIGEN_DISABLE_WARNINGS   -DTMB_LIB_INIT=R_init_gkwbetareg  -DCPPAD_FRAMEWORK -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c /tmp/RtmpUAp1dL/working_dir/Rtmpdh6qRl/gkwbetareg_compile_20250923021323/gkwbetareg.cpp -o /tmp/RtmpUAp1dL/working_dir/Rtmpdh6qRl/gkwbetareg_compile_20250923021323/gkwbetareg.o
g++ -std=gnu++17 -shared -L/usr/local/lib64 -o /tmp/RtmpUAp1dL/working_dir/Rtmpdh6qRl/gkwbetareg_compile_20250923021323/gkwbetareg.so /tmp/RtmpUAp1dL/working_dir/Rtmpdh6qRl/gkwbetareg_compile_20250923021323/gkwbetareg.o
make[1]: Leaving directory '/tmp/RtmpUAp1dL/working_dir/Rtmpdh6qRl/gkwbetareg_compile_20250923021323'
make[1]: Entering directory '/tmp/RtmpUAp1dL/working_dir/Rtmpdh6qRl/gkwbetareg_compile_20250923021323'
make[1]: Leaving directory '/tmp/RtmpUAp1dL/working_dir/Rtmpdh6qRl/gkwbetareg_compile_20250923021323'
using C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
make[1]: Entering directory '/tmp/RtmpUAp1dL/working_dir/Rtmpdh6qRl/bkwreg_compile_20250923021605'
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I"/data/gannet/ripley/R/test-dev/TMB/include" -I"/tmp/RtmpUAp1dL/working_dir/Rtmp5dC1jC/RLIBS_311c8e059a23/RcppEigen/include"   -DTMB_EIGEN_DISABLE_WARNINGS   -DTMB_LIB_INIT=R_init_bkwreg  -DCPPAD_FRAMEWORK -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c /tmp/RtmpUAp1dL/working_dir/Rtmpdh6qRl/bkwreg_compile_20250923021605/bkwreg.cpp -o /tmp/RtmpUAp1dL/working_dir/Rtmpdh6qRl/bkwreg_compile_20250923021605/bkwreg.o
g++ -std=gnu++17 -shared -L/usr/local/lib64 -o /tmp/RtmpUAp1dL/working_dir/Rtmpdh6qRl/bkwreg_compile_20250923021605/bkwreg.so /tmp/RtmpUAp1dL/working_dir/Rtmpdh6qRl/bkwreg_compile_20250923021605/bkwreg.o
make[1]: Leaving directory '/tmp/RtmpUAp1dL/working_dir/Rtmpdh6qRl/bkwreg_compile_20250923021605'
make[1]: Entering directory '/tmp/RtmpUAp1dL/working_dir/Rtmpdh6qRl/bkwreg_compile_20250923021605'
make[1]: Leaving directory '/tmp/RtmpUAp1dL/working_dir/Rtmpdh6qRl/bkwreg_compile_20250923021605'
using C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
make[1]: Entering directory '/tmp/RtmpUAp1dL/working_dir/Rtmpdh6qRl/ekwreg_compile_20250923021848'
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I"/data/gannet/ripley/R/test-dev/TMB/include" -I"/tmp/RtmpUAp1dL/working_dir/Rtmp5dC1jC/RLIBS_311c8e059a23/RcppEigen/include"   -DTMB_EIGEN_DISABLE_WARNINGS   -DTMB_LIB_INIT=R_init_ekwreg  -DCPPAD_FRAMEWORK -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c /tmp/RtmpUAp1dL/working_dir/Rtmpdh6qRl/ekwreg_compile_20250923021848/ekwreg.cpp -o /tmp/RtmpUAp1dL/working_dir/Rtmpdh6qRl/ekwreg_compile_20250923021848/ekwreg.o
g++ -std=gnu++17 -shared -L/usr/local/lib64 -o /tmp/RtmpUAp1dL/working_dir/Rtmpdh6qRl/ekwreg_compile_20250923021848/ekwreg.so /tmp/RtmpUAp1dL/working_dir/Rtmpdh6qRl/ekwreg_compile_20250923021848/ekwreg.o
make[1]: Leaving directory '/tmp/RtmpUAp1dL/working_dir/Rtmpdh6qRl/ekwreg_compile_20250923021848'
make[1]: Entering directory '/tmp/RtmpUAp1dL/working_dir/Rtmpdh6qRl/ekwreg_compile_20250923021848'
make[1]: Leaving directory '/tmp/RtmpUAp1dL/working_dir/Rtmpdh6qRl/ekwreg_compile_20250923021848'
using C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
make[1]: Entering directory '/tmp/RtmpUAp1dL/working_dir/Rtmpdh6qRl/gkwmletmb_compile_20250923022128'
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I"/data/gannet/ripley/R/test-dev/TMB/include" -I"/tmp/RtmpUAp1dL/working_dir/Rtmp5dC1jC/RLIBS_311c8e059a23/RcppEigen/include"   -DTMB_EIGEN_DISABLE_WARNINGS   -DTMB_LIB_INIT=R_init_gkwmletmb  -DCPPAD_FRAMEWORK -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c /tmp/RtmpUAp1dL/working_dir/Rtmpdh6qRl/gkwmletmb_compile_20250923022128/gkwmletmb.cpp -o /tmp/RtmpUAp1dL/working_dir/Rtmpdh6qRl/gkwmletmb_compile_20250923022128/gkwmletmb.o
g++ -std=gnu++17 -shared -L/usr/local/lib64 -o /tmp/RtmpUAp1dL/working_dir/Rtmpdh6qRl/gkwmletmb_compile_20250923022128/gkwmletmb.so /tmp/RtmpUAp1dL/working_dir/Rtmpdh6qRl/gkwmletmb_compile_20250923022128/gkwmletmb.o -fopenmp
make[1]: Leaving directory '/tmp/RtmpUAp1dL/working_dir/Rtmpdh6qRl/gkwmletmb_compile_20250923022128'
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make[1]: Leaving directory '/tmp/RtmpUAp1dL/working_dir/Rtmpdh6qRl/gkwmletmb_compile_20250923022128'
using C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
make[1]: Entering directory '/tmp/RtmpUAp1dL/working_dir/Rtmpdh6qRl/gkwreg_compile_20250923022400'
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I"/data/gannet/ripley/R/test-dev/TMB/include" -I"/tmp/RtmpUAp1dL/working_dir/Rtmp5dC1jC/RLIBS_311c8e059a23/RcppEigen/include"   -DTMB_EIGEN_DISABLE_WARNINGS   -DTMB_LIB_INIT=R_init_gkwreg  -DCPPAD_FRAMEWORK -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c /tmp/RtmpUAp1dL/working_dir/Rtmpdh6qRl/gkwreg_compile_20250923022400/gkwreg.cpp -o /tmp/RtmpUAp1dL/working_dir/Rtmpdh6qRl/gkwreg_compile_20250923022400/gkwreg.o
g++ -std=gnu++17 -shared -L/usr/local/lib64 -o /tmp/RtmpUAp1dL/working_dir/Rtmpdh6qRl/gkwreg_compile_20250923022400/gkwreg.so /tmp/RtmpUAp1dL/working_dir/Rtmpdh6qRl/gkwreg_compile_20250923022400/gkwreg.o
make[1]: Leaving directory '/tmp/RtmpUAp1dL/working_dir/Rtmpdh6qRl/gkwreg_compile_20250923022400'
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make[1]: Leaving directory '/tmp/RtmpUAp1dL/working_dir/Rtmpdh6qRl/gkwreg_compile_20250923022400'
using C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
make[1]: Entering directory '/tmp/RtmpUAp1dL/working_dir/Rtmpdh6qRl/kkwreg_compile_20250923022644'
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I"/data/gannet/ripley/R/test-dev/TMB/include" -I"/tmp/RtmpUAp1dL/working_dir/Rtmp5dC1jC/RLIBS_311c8e059a23/RcppEigen/include"   -DTMB_EIGEN_DISABLE_WARNINGS   -DTMB_LIB_INIT=R_init_kkwreg  -DCPPAD_FRAMEWORK -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c /tmp/RtmpUAp1dL/working_dir/Rtmpdh6qRl/kkwreg_compile_20250923022644/kkwreg.cpp -o /tmp/RtmpUAp1dL/working_dir/Rtmpdh6qRl/kkwreg_compile_20250923022644/kkwreg.o
g++ -std=gnu++17 -shared -L/usr/local/lib64 -o /tmp/RtmpUAp1dL/working_dir/Rtmpdh6qRl/kkwreg_compile_20250923022644/kkwreg.so /tmp/RtmpUAp1dL/working_dir/Rtmpdh6qRl/kkwreg_compile_20250923022644/kkwreg.o
make[1]: Leaving directory '/tmp/RtmpUAp1dL/working_dir/Rtmpdh6qRl/kkwreg_compile_20250923022644'
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make[1]: Leaving directory '/tmp/RtmpUAp1dL/working_dir/Rtmpdh6qRl/kkwreg_compile_20250923022644'
using C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
make[1]: Entering directory '/tmp/RtmpUAp1dL/working_dir/Rtmpdh6qRl/kwreg_compile_20250923022921'
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I"/data/gannet/ripley/R/test-dev/TMB/include" -I"/tmp/RtmpUAp1dL/working_dir/Rtmp5dC1jC/RLIBS_311c8e059a23/RcppEigen/include"   -DTMB_EIGEN_DISABLE_WARNINGS   -DTMB_LIB_INIT=R_init_kwreg  -DCPPAD_FRAMEWORK -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c /tmp/RtmpUAp1dL/working_dir/Rtmpdh6qRl/kwreg_compile_20250923022921/kwreg.cpp -o /tmp/RtmpUAp1dL/working_dir/Rtmpdh6qRl/kwreg_compile_20250923022921/kwreg.o
g++ -std=gnu++17 -shared -L/usr/local/lib64 -o /tmp/RtmpUAp1dL/working_dir/Rtmpdh6qRl/kwreg_compile_20250923022921/kwreg.so /tmp/RtmpUAp1dL/working_dir/Rtmpdh6qRl/kwreg_compile_20250923022921/kwreg.o
make[1]: Leaving directory '/tmp/RtmpUAp1dL/working_dir/Rtmpdh6qRl/kwreg_compile_20250923022921'
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make[1]: Leaving directory '/tmp/RtmpUAp1dL/working_dir/Rtmpdh6qRl/kwreg_compile_20250923022921'
using C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
make[1]: Entering directory '/tmp/RtmpUAp1dL/working_dir/Rtmpdh6qRl/mcreg_compile_20250923023159'
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I"/data/gannet/ripley/R/test-dev/TMB/include" -I"/tmp/RtmpUAp1dL/working_dir/Rtmp5dC1jC/RLIBS_311c8e059a23/RcppEigen/include"   -DTMB_EIGEN_DISABLE_WARNINGS   -DTMB_LIB_INIT=R_init_mcreg  -DCPPAD_FRAMEWORK -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c /tmp/RtmpUAp1dL/working_dir/Rtmpdh6qRl/mcreg_compile_20250923023159/mcreg.cpp -o /tmp/RtmpUAp1dL/working_dir/Rtmpdh6qRl/mcreg_compile_20250923023159/mcreg.o
g++ -std=gnu++17 -shared -L/usr/local/lib64 -o /tmp/RtmpUAp1dL/working_dir/Rtmpdh6qRl/mcreg_compile_20250923023159/mcreg.so /tmp/RtmpUAp1dL/working_dir/Rtmpdh6qRl/mcreg_compile_20250923023159/mcreg.o
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** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (gkwreg)