• using R Under development (unstable) (2023-09-01 r85045)
• using platform: x86_64-pc-linux-gnu
• R was compiled by
      gcc-13 (GCC) 13.2.0
      GNU Fortran (GCC) 13.2.0
• running under: Fedora Linux 36 (Workstation Edition)
• using session charset: UTF-8
• using option ‘--no-stop-on-test-error’
• checking for file ‘ggm/DESCRIPTION’ ... OK
• this is package ‘ggm’ version ‘2.5’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘ggm’ can be installed ... [14s/17s] OK
  See the install log for details.
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... NOTE
  Namespace in Imports field not imported from: ‘graph’
    All declared Imports should be used.
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [30s/39s] OK
• checking Rd files ... NOTE
  checkRd: (-1) In.Rd:21: Escaped LaTeX specials: \&
  checkRd: (-1) InducedGraphs.Rd:49: Escaped LaTeX specials: \&
  checkRd: (-1) InducedGraphs.Rd:86: Escaped LaTeX specials: \&
  checkRd: (-1) InducedGraphs.Rd:87: Escaped LaTeX specials: \&
  checkRd: (-1) InducedGraphs.Rd:89: Escaped LaTeX specials: \&
  checkRd: (-1) bfsearch.Rd:20: Escaped LaTeX specials: \&
  checkRd: (-1) bfsearch.Rd:30: Escaped LaTeX specials: \&
  checkRd: (-1) bfsearch.Rd:33: Escaped LaTeX specials: \&
  checkRd: (-1) checkIdent.Rd:29: Escaped LaTeX specials: \&
  checkRd: (-1) checkIdent.Rd:34: Escaped LaTeX specials: \&
  checkRd: (-1) correlations.Rd:22: Escaped LaTeX specials: \&
  checkRd: (-1) correlations.Rd:23: Escaped LaTeX specials: \&
  checkRd: (-1) cycleMatrix.Rd:27: Escaped LaTeX specials: \&
  checkRd: (-1) drawGraph.Rd:54: Escaped LaTeX specials: \&
  checkRd: (-1) edgematrix.Rd:35: Escaped LaTeX specials: \&
  checkRd: (-1) fitConGraph.Rd:44: Escaped LaTeX specials: \&
  checkRd: (-1) fitCovGraph.Rd:59: Escaped LaTeX specials: \&
  checkRd: (-1) fitDag.Rd:37: Escaped LaTeX specials: \&
  checkRd: (-1) fitDag.Rd:38: Escaped LaTeX specials: \&
  checkRd: (-1) fundCycles.Rd:27: Escaped LaTeX specials: \&
  checkRd: (-1) glucose.Rd:47: Escaped LaTeX specials: \&
  checkRd: (-1) glucose.Rd:48: Escaped LaTeX specials: \&
  checkRd: (-1) icf.Rd:38: Escaped LaTeX specials: \&
  checkRd: (-1) icf.Rd:44: Escaped LaTeX specials: \&
  checkRd: (-1) isAcyclic.Rd:20: Escaped LaTeX specials: \&
  checkRd: (-1) isGident.Rd:24: Escaped LaTeX specials: \&
  checkRd: (-1) isGident.Rd:31: Escaped LaTeX specials: \&
  checkRd: (-1) isGident.Rd:32: Escaped LaTeX specials: \&
  checkRd: (-1) parcor.Rd:24: Escaped LaTeX specials: \&
  checkRd: (-1) parcor.Rd:25: Escaped LaTeX specials: \&
  checkRd: (-1) rcorr.Rd:24: Escaped LaTeX specials: \&
  checkRd: (-1) rnormDag.Rd:36: Escaped LaTeX specials: \&
  checkRd: (-1) rnormDag.Rd:37: Escaped LaTeX specials: \&
  checkRd: (-1) stress.Rd:24: Escaped LaTeX specials: \&
  checkRd: (-1) stress.Rd:25: Escaped LaTeX specials: \&
  checkRd: (-1) topSort.Rd:35: Escaped LaTeX specials: \&
  checkRd: (-1) triDec.Rd:34: Escaped LaTeX specials: \&
  checkRd: (-1) triDec.Rd:35: Escaped LaTeX specials: \&
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... NOTE
  Argument items with no description in Rd object 'isADMG':
    ‘amat’
  Argument items with no description in Rd object 'isAG':
    ‘amat’
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking examples ... [15s/22s] OK
• checking PDF version of manual ... [12s/18s] OK
• checking HTML version of manual ... [7s/12s] OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 3 NOTEs