* installing *source* package ‘gfilogisreg’ ... ** package ‘gfilogisreg’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-13 (GCC) 13.2.0’ using C++17 make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/gfilogisreg/src' g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/roptim/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c RcppExports.cpp -o RcppExports.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/roptim/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c gfilogisreg.cpp -o gfilogisreg.o In file included from /data/gannet/ripley/R/test-dev/BH/include/boost/cstdfloat.hpp:27, from /data/gannet/ripley/R/test-dev/BH/include/boost/multiprecision/detail/float128_functions.hpp:15, from /data/gannet/ripley/R/test-dev/BH/include/boost/multiprecision/detail/fpclassify.hpp:13, from /data/gannet/ripley/R/test-dev/BH/include/boost/multiprecision/detail/default_ops.hpp:15, from /data/gannet/ripley/R/test-dev/BH/include/boost/multiprecision/detail/generic_interconvert.hpp:12, from /data/gannet/ripley/R/test-dev/BH/include/boost/multiprecision/number.hpp:12, from /data/gannet/ripley/R/test-dev/BH/include/boost/multiprecision/gmp.hpp:11, from gfilogisreg.cpp:1: /data/gannet/ripley/R/test-dev/BH/include/boost/math/cstdfloat/cstdfloat_cmath.hpp:714:16: warning: non-standard suffix on floating constant [-Wpedantic] 714 | else if (x == BOOST_FLOAT128_C(0.0)) | ^~~~ /data/gannet/ripley/R/test-dev/BH/include/boost/math/cstdfloat/cstdfloat_cmath.hpp:717:16: warning: non-standard suffix on floating constant [-Wpedantic] 717 | if (::BOOST_CSTDFLOAT_FLOAT128_FABS(x) < BOOST_CSTDFLOAT_FLOAT128_MIN) | ^~ gfilogisreg.cpp: In function 'Rcpp::CharacterVector vector2q(arma::colvec&)': gfilogisreg.cpp:324:21: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare] 324 | for(auto i = 0; i < x.size(); i++) { | ~~^~~~~~~~~~ gfilogisreg.cpp: In function 'Rcpp::List loop1(Rcpp::List, Rcpp::List, int, const arma::colvec&)': gfilogisreg.cpp:367:23: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long unsigned int'} [-Wsign-compare] 367 | for(auto i = 0; i < N; i++) { | ~~^~~ gfilogisreg.cpp:376:23: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long unsigned int'} [-Wsign-compare] 376 | for(auto i = 0; i < N; i++) { | ~~^~~ g++-13 -std=gnu++17 -shared -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o gfilogisreg.so RcppExports.o gfilogisreg.o -fopenmp -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath -lgmp make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/gfilogisreg/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/gfilogisreg/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/gfilogisreg/src' installing to /data/gannet/ripley/R/packages/tests-devel/gfilogisreg.Rcheck/00LOCK-gfilogisreg/00new/gfilogisreg/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gfilogisreg)