* installing *source* package ‘gesso’ ...
** package ‘gesso’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (GCC) 13.2.0’
using C++11
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/gesso/src'
g++-13 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/RcppThread/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/bigmemory/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/RcppThread/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/bigmemory/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c rcpp_compute_grid.cpp -o rcpp_compute_grid.o
In file included from /data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:18,
from /data/gannet/ripley/R/test-dev/BH/include/boost/shared_ptr.hpp:17,
from /data/gannet/ripley/R/test-dev/bigmemory/include/bigmemory/BigMatrix.h:10,
from /data/gannet/ripley/R/test-dev/bigmemory/include/bigmemory/MatrixAccessor.hpp:4,
from rcpp_compute_grid.cpp:1:
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
361 | explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
| ^~~~~~~~
In file included from /usr/local/gcc13/include/c++/13.2.0/memory:78,
from /data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/detail/shared_count.hpp:27:
/usr/local/gcc13/include/c++/13.2.0/bits/unique_ptr.h:65:28: note: declared here
65 | template<typename> class auto_ptr;
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:251:65: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
251 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
| ^~~~~~~~
/usr/local/gcc13/include/c++/13.2.0/bits/unique_ptr.h:65:28: note: declared here
65 | template<typename> class auto_ptr;
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:508:31: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
508 | explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
| ^~~~~~~~
/usr/local/gcc13/include/c++/13.2.0/bits/unique_ptr.h:65:28: note: declared here
65 | template<typename> class auto_ptr;
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:521:22: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
521 | shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
| ^~~~~~~~
/usr/local/gcc13/include/c++/13.2.0/bits/unique_ptr.h:65:28: note: declared here
65 | template<typename> class auto_ptr;
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:604:34: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
604 | shared_ptr & operator=( std::auto_ptr<Y> & r )
| ^~~~~~~~
/usr/local/gcc13/include/c++/13.2.0/bits/unique_ptr.h:65:28: note: declared here
65 | template<typename> class auto_ptr;
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:613:34: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
613 | shared_ptr & operator=( std::auto_ptr<Y> && r )
| ^~~~~~~~
/usr/local/gcc13/include/c++/13.2.0/bits/unique_ptr.h:65:28: note: declared here
65 | template<typename> class auto_ptr;
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function 'boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)':
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:615:38: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
615 | this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
| ^~~~~~~~
/usr/local/gcc13/include/c++/13.2.0/bits/unique_ptr.h:65:28: note: declared here
65 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from rcpp_compute_grid.cpp:7:
Solver.h: In instantiation of 'void Solver<TG>::update_weighted_variables(bool) [with TG = Eigen::Map<Eigen::SparseMatrix<double, 0, int> >]':
GaussianSolver.h:117:32: required from 'void GaussianSolver<TG>::init() [with TG = Eigen::Map<Eigen::SparseMatrix<double, 0, int> >]'
GaussianSolver.h:112:7: required from 'GaussianSolver<TG>::GaussianSolver(const MapSparseMat&, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >&, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >&, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >&, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >&, bool) [with TG = Eigen::Map<Eigen::SparseMatrix<double, 0, int> >; MapSparseMat = Eigen::Map<Eigen::SparseMatrix<double, 0, int> >]'
rcpp_compute_grid.cpp:29:24: required from 'double computeLambdaMaxRcpp(const TG&, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >&, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >&, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >&, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >&, const Rcpp::LogicalVector&, const std::string&) [with TG = Eigen::Map<Eigen::SparseMatrix<double, 0, int> >; Rcpp::LogicalVector = Rcpp::Vector<10, Rcpp::PreserveStorage>; std::string = std::__cxx11::basic_string<char>]'
rcpp_compute_grid.cpp:60:46: required from here
Solver.h:237:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
237 | for (int j = 0; j < working_set.size(); ++j) {
| ~~^~~~~~~~~~~~~~~~~~~~
Solver.h: In instantiation of 'void Solver<TG>::update_weighted_variables(bool) [with TG = Eigen::Map<const Eigen::Matrix<double, -1, -1> >]':
GaussianSolver.h:117:32: required from 'void GaussianSolver<TG>::init() [with TG = Eigen::Map<const Eigen::Matrix<double, -1, -1> >]'
GaussianSolver.h:94:7: required from 'GaussianSolver<TG>::GaussianSolver(const MapMat&, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >&, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >&, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >&, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >&, bool) [with TG = Eigen::Map<const Eigen::Matrix<double, -1, -1> >; MapMat = Eigen::Map<const Eigen::Matrix<double, -1, -1> >]'
rcpp_compute_grid.cpp:29:24: required from 'double computeLambdaMaxRcpp(const TG&, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >&, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >&, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >&, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >&, const Rcpp::LogicalVector&, const std::string&) [with TG = Eigen::Map<const Eigen::Matrix<double, -1, -1> >; Rcpp::LogicalVector = Rcpp::Vector<10, Rcpp::PreserveStorage>; std::string = std::__cxx11::basic_string<char>]'
rcpp_compute_grid.cpp:66:40: required from here
Solver.h:237:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
In file included from rcpp_compute_grid.cpp:9:
BinomialSolver.h: In instantiation of 'double BinomialSolver<TG>::get_test_loss(const std::vector<int>&) [with TG = Eigen::Map<const Eigen::Matrix<double, -1, -1> >]':
BinomialSolver.h:420:20: required from here
BinomialSolver.h:423:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
423 | for (int i = 0; i < test_idx.size(); ++i) {
| ~~^~~~~~~~~~~~~~~~~
In file included from rcpp_compute_grid.cpp:8:
GaussianSolver.h: In instantiation of 'double GaussianSolver<TG>::get_test_loss(const std::vector<int>&) [with TG = Eigen::Map<const Eigen::Matrix<double, -1, -1> >]':
GaussianSolver.h:346:20: required from here
GaussianSolver.h:349:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
349 | for (int i = 0; i < test_idx.size(); ++i) {
| ~~^~~~~~~~~~~~~~~~~
BinomialSolver.h: In instantiation of 'double BinomialSolver<TG>::get_test_loss(const std::vector<int>&) [with TG = Eigen::Map<Eigen::SparseMatrix<double, 0, int> >]':
BinomialSolver.h:420:20: required from here
BinomialSolver.h:423:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
423 | for (int i = 0; i < test_idx.size(); ++i) {
| ~~^~~~~~~~~~~~~~~~~
GaussianSolver.h: In instantiation of 'double GaussianSolver<TG>::get_test_loss(const std::vector<int>&) [with TG = Eigen::Map<Eigen::SparseMatrix<double, 0, int> >]':
GaussianSolver.h:346:20: required from here
GaussianSolver.h:349:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
349 | for (int i = 0; i < test_idx.size(); ++i) {
| ~~^~~~~~~~~~~~~~~~~
BinomialSolver.h: In instantiation of 'void BinomialSolver<TG>::update_working_set(double, double, double, int) [with TG = Eigen::Map<const Eigen::Matrix<double, -1, -1> >]':
BinomialSolver.h:207:9: required from 'int BinomialSolver<TG>::solve(double, double, double, int, int) [with TG = Eigen::Map<const Eigen::Matrix<double, -1, -1> >]'
BinomialSolver.h:182:9: required from here
BinomialSolver.h:410:93: warning: comparison of integer expressions of different signedness: 'std::vector<int>::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
410 | if (b_g[index] == 0 && b_gxe[index] == 0 && safe_set_g[index] && working_set.size() < working_set_size) {
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
Solver.h: In instantiation of 'double Solver<TG>::update_b_for_working_set(double, double, bool) [with TG = Eigen::Map<const Eigen::Matrix<double, -1, -1> >]':
BinomialSolver.h:232:48: required from 'int BinomialSolver<TG>::solve(double, double, double, int, int) [with TG = Eigen::Map<const Eigen::Matrix<double, -1, -1> >]'
BinomialSolver.h:182:9: required from here
Solver.h:278:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
278 | for (int k = 0; k < working_set.size(); ++k) {
| ~~^~~~~~~~~~~~~~~~~~~~
Solver.h:271:12: warning: unused variable 'b_0_old' [-Wunused-variable]
271 | double b_0_old, b_e_old, b_g_old, b_gxe_old, b_g_new;
| ^~~~~~~
Solver.h:271:21: warning: unused variable 'b_e_old' [-Wunused-variable]
271 | double b_0_old, b_e_old, b_g_old, b_gxe_old, b_g_new;
| ^~~~~~~
GaussianSolver.h: In instantiation of 'void GaussianSolver<TG>::update_working_set(double, double, double, int) [with TG = Eigen::Map<const Eigen::Matrix<double, -1, -1> >]':
GaussianSolver.h:163:9: required from 'int GaussianSolver<TG>::solve(double, double, double, int, int) [with TG = Eigen::Map<const Eigen::Matrix<double, -1, -1> >]'
GaussianSolver.h:142:17: required from here
GaussianSolver.h:306:93: warning: comparison of integer expressions of different signedness: 'std::vector<int>::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
306 | if (b_g[index] == 0 && b_gxe[index] == 0 && safe_set_g[index] && working_set.size() < working_set_size) {
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
BinomialSolver.h: In instantiation of 'void BinomialSolver<TG>::update_working_set(double, double, double, int) [with TG = Eigen::Map<Eigen::SparseMatrix<double, 0, int> >]':
BinomialSolver.h:207:9: required from 'int BinomialSolver<TG>::solve(double, double, double, int, int) [with TG = Eigen::Map<Eigen::SparseMatrix<double, 0, int> >]'
BinomialSolver.h:182:9: required from here
BinomialSolver.h:410:93: warning: comparison of integer expressions of different signedness: 'std::vector<int>::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
410 | if (b_g[index] == 0 && b_gxe[index] == 0 && safe_set_g[index] && working_set.size() < working_set_size) {
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
Solver.h: In instantiation of 'double Solver<TG>::update_b_for_working_set(double, double, bool) [with TG = Eigen::Map<Eigen::SparseMatrix<double, 0, int> >]':
BinomialSolver.h:232:48: required from 'int BinomialSolver<TG>::solve(double, double, double, int, int) [with TG = Eigen::Map<Eigen::SparseMatrix<double, 0, int> >]'
BinomialSolver.h:182:9: required from here
Solver.h:278:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
278 | for (int k = 0; k < working_set.size(); ++k) {
| ~~^~~~~~~~~~~~~~~~~~~~
Solver.h:271:12: warning: unused variable 'b_0_old' [-Wunused-variable]
271 | double b_0_old, b_e_old, b_g_old, b_gxe_old, b_g_new;
| ^~~~~~~
Solver.h:271:21: warning: unused variable 'b_e_old' [-Wunused-variable]
271 | double b_0_old, b_e_old, b_g_old, b_gxe_old, b_g_new;
| ^~~~~~~
GaussianSolver.h: In instantiation of 'void GaussianSolver<TG>::update_working_set(double, double, double, int) [with TG = Eigen::Map<Eigen::SparseMatrix<double, 0, int> >]':
GaussianSolver.h:163:9: required from 'int GaussianSolver<TG>::solve(double, double, double, int, int) [with TG = Eigen::Map<Eigen::SparseMatrix<double, 0, int> >]'
GaussianSolver.h:142:17: required from here
GaussianSolver.h:306:93: warning: comparison of integer expressions of different signedness: 'std::vector<int>::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
306 | if (b_g[index] == 0 && b_gxe[index] == 0 && safe_set_g[index] && working_set.size() < working_set_size) {
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
BinomialSolver.h: In instantiation of 'void BinomialSolver<TG>::update_inner_nu(double, double) [with TG = Eigen::Map<const Eigen::Matrix<double, -1, -1> >]':
BinomialSolver.h:346:7: required from 'double BinomialSolver<TG>::check_inner_duality_gap(double, double) [with TG = Eigen::Map<const Eigen::Matrix<double, -1, -1> >]'
BinomialSolver.h:216:31: required from 'int BinomialSolver<TG>::solve(double, double, double, int, int) [with TG = Eigen::Map<const Eigen::Matrix<double, -1, -1> >]'
BinomialSolver.h:182:9: required from here
BinomialSolver.h:329:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
329 | for (int i = 0; i < working_set.size(); ++i) {
| ~~^~~~~~~~~~~~~~~~~~~~
GaussianSolver.h: In instantiation of 'double GaussianSolver<TG>::update_inner_nu(double, double) [with TG = Eigen::Map<const Eigen::Matrix<double, -1, -1> >]':
GaussianSolver.h:263:34: required from 'double GaussianSolver<TG>::check_duality_gap(double, double, bool) [with TG = Eigen::Map<const Eigen::Matrix<double, -1, -1> >]'
GaussianSolver.h:159:23: required from 'int GaussianSolver<TG>::solve(double, double, double, int, int) [with TG = Eigen::Map<const Eigen::Matrix<double, -1, -1> >]'
GaussianSolver.h:142:17: required from here
GaussianSolver.h:251:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
251 | for (int i = 0; i < working_set.size(); ++i) {
| ~~^~~~~~~~~~~~~~~~~~~~
BinomialSolver.h: In instantiation of 'void BinomialSolver<TG>::update_inner_nu(double, double) [with TG = Eigen::Map<Eigen::SparseMatrix<double, 0, int> >]':
BinomialSolver.h:346:7: required from 'double BinomialSolver<TG>::check_inner_duality_gap(double, double) [with TG = Eigen::Map<Eigen::SparseMatrix<double, 0, int> >]'
BinomialSolver.h:216:31: required from 'int BinomialSolver<TG>::solve(double, double, double, int, int) [with TG = Eigen::Map<Eigen::SparseMatrix<double, 0, int> >]'
BinomialSolver.h:182:9: required from here
BinomialSolver.h:329:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
329 | for (int i = 0; i < working_set.size(); ++i) {
| ~~^~~~~~~~~~~~~~~~~~~~
GaussianSolver.h: In instantiation of 'double GaussianSolver<TG>::update_inner_nu(double, double) [with TG = Eigen::Map<Eigen::SparseMatrix<double, 0, int> >]':
GaussianSolver.h:263:34: required from 'double GaussianSolver<TG>::check_duality_gap(double, double, bool) [with TG = Eigen::Map<Eigen::SparseMatrix<double, 0, int> >]'
GaussianSolver.h:159:23: required from 'int GaussianSolver<TG>::solve(double, double, double, int, int) [with TG = Eigen::Map<Eigen::SparseMatrix<double, 0, int> >]'
GaussianSolver.h:142:17: required from here
GaussianSolver.h:251:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
251 | for (int i = 0; i < working_set.size(); ++i) {
| ~~^~~~~~~~~~~~~~~~~~~~
g++-13 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/RcppThread/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/bigmemory/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c rcpp_wrappers_cv.cpp -o rcpp_wrappers_cv.o
In file included from /data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:18,
from /data/gannet/ripley/R/test-dev/BH/include/boost/shared_ptr.hpp:17,
from /data/gannet/ripley/R/test-dev/bigmemory/include/bigmemory/BigMatrix.h:10,
from /data/gannet/ripley/R/test-dev/bigmemory/include/bigmemory/MatrixAccessor.hpp:4,
from rcpp_wrappers_cv.cpp:1:
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
361 | explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
| ^~~~~~~~
In file included from /usr/local/gcc13/include/c++/13.2.0/memory:78,
from /data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/detail/shared_count.hpp:27:
/usr/local/gcc13/include/c++/13.2.0/bits/unique_ptr.h:65:28: note: declared here
65 | template<typename> class auto_ptr;
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:251:65: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
251 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
| ^~~~~~~~
/usr/local/gcc13/include/c++/13.2.0/bits/unique_ptr.h:65:28: note: declared here
65 | template<typename> class auto_ptr;
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:508:31: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
508 | explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
| ^~~~~~~~
/usr/local/gcc13/include/c++/13.2.0/bits/unique_ptr.h:65:28: note: declared here
65 | template<typename> class auto_ptr;
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:521:22: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
521 | shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
| ^~~~~~~~
/usr/local/gcc13/include/c++/13.2.0/bits/unique_ptr.h:65:28: note: declared here
65 | template<typename> class auto_ptr;
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:604:34: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
604 | shared_ptr & operator=( std::auto_ptr<Y> & r )
| ^~~~~~~~
/usr/local/gcc13/include/c++/13.2.0/bits/unique_ptr.h:65:28: note: declared here
65 | template<typename> class auto_ptr;
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:613:34: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
613 | shared_ptr & operator=( std::auto_ptr<Y> && r )
| ^~~~~~~~
/usr/local/gcc13/include/c++/13.2.0/bits/unique_ptr.h:65:28: note: declared here
65 | template<typename> class auto_ptr;
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function 'boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)':
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:615:38: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
615 | this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
| ^~~~~~~~
/usr/local/gcc13/include/c++/13.2.0/bits/unique_ptr.h:65:28: note: declared here
65 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/Core:255,
from /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/Dense:1,
from /data/gannet/ripley/R/test-dev/RcppEigen/include/RcppEigenForward.h:28,
from /data/gannet/ripley/R/test-dev/RcppEigen/include/RcppEigen.h:25,
from rcpp_compute_grid.cpp:3:
In copy constructor 'Eigen::internal::scalar_constant_op<Scalar>::scalar_constant_op(const Eigen::internal::scalar_constant_op<Scalar>&) [with Scalar = double]',
inlined from 'Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >::CwiseNullaryOp(const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >&)' at /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7,
inlined from 'Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > > > >::CwiseBinaryOp(const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > > > >&)' at /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7,
inlined from 'Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::Map<Eigen::SparseMatrix<double, 0, int> >, 0>::Product(const Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::Map<Eigen::SparseMatrix<double, 0, int> >, 0>&)' at /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Product.h:71:7,
inlined from 'Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::Map<Eigen::SparseMatrix<double, 0, int> >, 0> >::CwiseUnaryOp(const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::Map<Eigen::SparseMatrix<double, 0, int> >, 0> >&)' at /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7,
inlined from 'Eigen::Transpose<MatrixType>::Transpose(const Eigen::Transpose<MatrixType>&) [with MatrixType = const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::Map<Eigen::SparseMatrix<double, 0, int> >, 0> >]' at /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Transpose.h:66:5,
inlined from 'Eigen::CwiseBinaryOp<BinaryOp, Lhs, Rhs>::CwiseBinaryOp(const Lhs&, const Rhs&, const BinaryOp&) [with BinaryOp = Eigen::internal::scalar_product_op<double, double>; LhsType = const Eigen::Transpose<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::Map<Eigen::SparseMatrix<double, 0, int> >, 0> > >; RhsType = const Eigen::Matrix<double, -1, 1>]' at /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:111:9,
inlined from 'const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<typename Eigen::internal::traits<T>::Scalar, typename Eigen::internal::traits<OtherDerived>::Scalar>, const Derived, const OtherDerived> Eigen::MatrixBase<Derived>::cwiseProduct(const Eigen::MatrixBase<OtherDerived>&) const [with OtherDerived = Eigen::Matrix<double, -1, 1>; Derived = Eigen::Transpose<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::Map<Eigen::SparseMatrix<double, 0, int> >, 0> > >]' at /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/../plugins/MatrixCwiseBinaryOps.h:25:97,
inlined from 'double computeLambdaMaxRcpp(const TG&, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >&, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >&, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >&, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >&, const Rcpp::LogicalVector&, const std::string&) [with TG = Eigen::Map<Eigen::SparseMatrix<double, 0, int> >]' at rcpp_compute_grid.cpp:44:7:
/data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/functors/NullaryFunctors.h:19:95: warning: 'normalize_weights_e' may be used uninitialized [-Wmaybe-uninitialized]
19 | EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE scalar_constant_op(const scalar_constant_op& other) : m_other(other.m_other) { }
| ^~~~~~~~~~~~~~~~~~~~~~
rcpp_compute_grid.cpp: In function 'double computeLambdaMaxRcpp(const TG&, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >&, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >&, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >&, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >&, const Rcpp::LogicalVector&, const std::string&) [with TG = Eigen::Map<Eigen::SparseMatrix<double, 0, int> >]':
rcpp_compute_grid.cpp:26:10: note: 'normalize_weights_e' was declared here
26 | double normalize_weights_e;
| ^~~~~~~~~~~~~~~~~~~
In copy constructor 'Eigen::internal::scalar_constant_op<Scalar>::scalar_constant_op(const Eigen::internal::scalar_constant_op<Scalar>&) [with Scalar = double]',
inlined from 'Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >::CwiseNullaryOp(const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >&)' at /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7,
inlined from 'Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > > > >::CwiseBinaryOp(const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > > > >&)' at /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7,
inlined from 'Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::Map<const Eigen::Matrix<double, -1, -1> >, 0>::Product(const Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::Map<const Eigen::Matrix<double, -1, -1> >, 0>&)' at /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Product.h:71:7,
inlined from 'Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::Map<const Eigen::Matrix<double, -1, -1> >, 0> >::CwiseUnaryOp(const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::Map<const Eigen::Matrix<double, -1, -1> >, 0> >&)' at /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7,
inlined from 'Eigen::Transpose<MatrixType>::Transpose(const Eigen::Transpose<MatrixType>&) [with MatrixType = const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::Map<const Eigen::Matrix<double, -1, -1> >, 0> >]' at /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/Transpose.h:66:5,
inlined from 'Eigen::CwiseBinaryOp<BinaryOp, Lhs, Rhs>::CwiseBinaryOp(const Lhs&, const Rhs&, const BinaryOp&) [with BinaryOp = Eigen::internal::scalar_product_op<double, double>; LhsType = const Eigen::Transpose<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::Map<const Eigen::Matrix<double, -1, -1> >, 0> > >; RhsType = const Eigen::Matrix<double, -1, 1>]' at /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:111:9,
inlined from 'const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<typename Eigen::internal::traits<T>::Scalar, typename Eigen::internal::traits<OtherDerived>::Scalar>, const Derived, const OtherDerived> Eigen::MatrixBase<Derived>::cwiseProduct(const Eigen::MatrixBase<OtherDerived>&) const [with OtherDerived = Eigen::Matrix<double, -1, 1>; Derived = Eigen::Transpose<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Matrix<double, -1, 1>, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > > > >, Eigen::Map<const Eigen::Matrix<double, -1, -1> >, 0> > >]' at /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/../plugins/MatrixCwiseBinaryOps.h:25:97,
inlined from 'double computeLambdaMaxRcpp(const TG&, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >&, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >&, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >&, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >&, const Rcpp::LogicalVector&, const std::string&) [with TG = Eigen::Map<const Eigen::Matrix<double, -1, -1> >]' at rcpp_compute_grid.cpp:44:7:
/data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/functors/NullaryFunctors.h:19:95: warning: 'normalize_weights_e' may be used uninitialized [-Wmaybe-uninitialized]
19 | EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE scalar_constant_op(const scalar_constant_op& other) : m_other(other.m_other) { }
| ^~~~~~~~~~~~~~~~~~~~~~
rcpp_compute_grid.cpp: In function 'double computeLambdaMaxRcpp(const TG&, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >&, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >&, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >&, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >&, const Rcpp::LogicalVector&, const std::string&) [with TG = Eigen::Map<const Eigen::Matrix<double, -1, -1> >]':
rcpp_compute_grid.cpp:26:10: note: 'normalize_weights_e' was declared here
26 | double normalize_weights_e;
| ^~~~~~~~~~~~~~~~~~~
rcpp_wrappers_cv.cpp: In instantiation of 'void fitModelCVRcppSingleFold(const TG&, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >&, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >&, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >&, const VecXd&, const Rcpp::LogicalVector&, const Eigen::VectorXd&, double, const std::string&, double, int, int, int, Eigen::MatrixXd&, Eigen::MatrixXd&, Eigen::MatrixXi&, Eigen::MatrixXi&, Eigen::MatrixXi&) [with TG = Eigen::Map<Eigen::SparseMatrix<double, 0, int> >; VecXd = Eigen::Matrix<double, -1, 1>; Rcpp::LogicalVector = Rcpp::Vector<10, Rcpp::PreserveStorage>; Eigen::VectorXd = Eigen::Matrix<double, -1, 1>; std::string = std::__cxx11::basic_string<char>; Eigen::MatrixXd = Eigen::Matrix<double, -1, -1>; Eigen::MatrixXi = Eigen::Matrix<int, -1, -1>]':
rcpp_wrappers_cv.cpp:143:35: required from 'Rcpp::List fitModelCVRcpp(const TG&, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >&, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >&, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >&, const Rcpp::LogicalVector&, const Eigen::VectorXd&, double, const std::string&, double, int, int, const Eigen::VectorXd&, int, int) [with TG = Eigen::Map<Eigen::SparseMatrix<double, 0, int> >; Rcpp::List = Rcpp::Vector<19>; Rcpp::LogicalVector = Rcpp::Vector<10, Rcpp::PreserveStorage>; Eigen::VectorXd = Eigen::Matrix<double, -1, 1>; std::string = std::__cxx11::basic_string<char>]'
rcpp_wrappers_cv.cpp:183:40: required from here
rcpp_wrappers_cv.cpp:91:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
91 | for (int i = 0; i < test_idx.size(); ++i) {
| ~~^~~~~~~~~~~~~~~~~
rcpp_wrappers_cv.cpp: In instantiation of 'void fitModelCVRcppSingleFold(const TG&, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >&, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >&, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >&, const VecXd&, const Rcpp::LogicalVector&, const Eigen::VectorXd&, double, const std::string&, double, int, int, int, Eigen::MatrixXd&, Eigen::MatrixXd&, Eigen::MatrixXi&, Eigen::MatrixXi&, Eigen::MatrixXi&) [with TG = Eigen::Map<const Eigen::Matrix<double, -1, -1> >; VecXd = Eigen::Matrix<double, -1, 1>; Rcpp::LogicalVector = Rcpp::Vector<10, Rcpp::PreserveStorage>; Eigen::VectorXd = Eigen::Matrix<double, -1, 1>; std::string = std::__cxx11::basic_string<char>; Eigen::MatrixXd = Eigen::Matrix<double, -1, -1>; Eigen::MatrixXi = Eigen::Matrix<int, -1, -1>]':
rcpp_wrappers_cv.cpp:143:35: required from 'Rcpp::List fitModelCVRcpp(const TG&, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >&, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >&, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >&, const Rcpp::LogicalVector&, const Eigen::VectorXd&, double, const std::string&, double, int, int, const Eigen::VectorXd&, int, int) [with TG = Eigen::Map<const Eigen::Matrix<double, -1, -1> >; Rcpp::List = Rcpp::Vector<19>; Rcpp::LogicalVector = Rcpp::Vector<10, Rcpp::PreserveStorage>; Eigen::VectorXd = Eigen::Matrix<double, -1, 1>; std::string = std::__cxx11::basic_string<char>]'
rcpp_wrappers_cv.cpp:191:34: required from here
rcpp_wrappers_cv.cpp:91:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
In file included from rcpp_wrappers_cv.cpp:13:
Solver.h: In instantiation of 'void Solver<TG>::update_weighted_variables(bool) [with TG = Eigen::Map<Eigen::SparseMatrix<double, 0, int> >]':
GaussianSolver.h:117:32: required from 'void GaussianSolver<TG>::init() [with TG = Eigen::Map<Eigen::SparseMatrix<double, 0, int> >]'
GaussianSolver.h:112:7: required from 'GaussianSolver<TG>::GaussianSolver(const MapSparseMat&, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >&, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >&, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >&, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >&, bool) [with TG = Eigen::Map<Eigen::SparseMatrix<double, 0, int> >; MapSparseMat = Eigen::Map<Eigen::SparseMatrix<double, 0, int> >]'
rcpp_wrappers_cv.cpp:55:7: required from 'void fitModelCVRcppSingleFold(const TG&, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >&, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >&, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >&, const VecXd&, const Rcpp::LogicalVector&, const Eigen::VectorXd&, double, const std::string&, double, int, int, int, Eigen::MatrixXd&, Eigen::MatrixXd&, Eigen::MatrixXi&, Eigen::MatrixXi&, Eigen::MatrixXi&) [with TG = Eigen::Map<Eigen::SparseMatrix<double, 0, int> >; VecXd = Eigen::Matrix<double, -1, 1>; Rcpp::LogicalVector = Rcpp::Vector<10, Rcpp::PreserveStorage>; Eigen::VectorXd = Eigen::Matrix<double, -1, 1>; std::string = std::__cxx11::basic_string<char>; Eigen::MatrixXd = Eigen::Matrix<double, -1, -1>; Eigen::MatrixXi = Eigen::Matrix<int, -1, -1>]'
rcpp_wrappers_cv.cpp:143:35: required from 'Rcpp::List fitModelCVRcpp(const TG&, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >&, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >&, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >&, const Rcpp::LogicalVector&, const Eigen::VectorXd&, double, const std::string&, double, int, int, const Eigen::VectorXd&, int, int) [with TG = Eigen::Map<Eigen::SparseMatrix<double, 0, int> >; Rcpp::List = Rcpp::Vector<19>; Rcpp::LogicalVector = Rcpp::Vector<10, Rcpp::PreserveStorage>; Eigen::VectorXd = Eigen::Matrix<double, -1, 1>; std::string = std::__cxx11::basic_string<char>]'
rcpp_wrappers_cv.cpp:183:40: required from here
Solver.h:237:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
237 | for (int j = 0; j < working_set.size(); ++j) {
| ~~^~~~~~~~~~~~~~~~~~~~
Solver.h: In instantiation of 'void Solver<TG>::update_weighted_variables(bool) [with TG = Eigen::Map<const Eigen::Matrix<double, -1, -1> >]':
GaussianSolver.h:117:32: required from 'void GaussianSolver<TG>::init() [with TG = Eigen::Map<const Eigen::Matrix<double, -1, -1> >]'
GaussianSolver.h:94:7: required from 'GaussianSolver<TG>::GaussianSolver(const MapMat&, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >&, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >&, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >&, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >&, bool) [with TG = Eigen::Map<const Eigen::Matrix<double, -1, -1> >; MapMat = Eigen::Map<const Eigen::Matrix<double, -1, -1> >]'
rcpp_wrappers_cv.cpp:55:7: required from 'void fitModelCVRcppSingleFold(const TG&, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >&, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >&, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >&, const VecXd&, const Rcpp::LogicalVector&, const Eigen::VectorXd&, double, const std::string&, double, int, int, int, Eigen::MatrixXd&, Eigen::MatrixXd&, Eigen::MatrixXi&, Eigen::MatrixXi&, Eigen::MatrixXi&) [with TG = Eigen::Map<const Eigen::Matrix<double, -1, -1> >; VecXd = Eigen::Matrix<double, -1, 1>; Rcpp::LogicalVector = Rcpp::Vector<10, Rcpp::PreserveStorage>; Eigen::VectorXd = Eigen::Matrix<double, -1, 1>; std::string = std::__cxx11::basic_string<char>; Eigen::MatrixXd = Eigen::Matrix<double, -1, -1>; Eigen::MatrixXi = Eigen::Matrix<int, -1, -1>]'
rcpp_wrappers_cv.cpp:143:35: required from 'Rcpp::List fitModelCVRcpp(const TG&, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >&, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >&, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >&, const Rcpp::LogicalVector&, const Eigen::VectorXd&, double, const std::string&, double, int, int, const Eigen::VectorXd&, int, int) [with TG = Eigen::Map<const Eigen::Matrix<double, -1, -1> >; Rcpp::List = Rcpp::Vector<19>; Rcpp::LogicalVector = Rcpp::Vector<10, Rcpp::PreserveStorage>; Eigen::VectorXd = Eigen::Matrix<double, -1, 1>; std::string = std::__cxx11::basic_string<char>]'
rcpp_wrappers_cv.cpp:191:34: required from here
Solver.h:237:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
g++-13 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/RcppThread/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/bigmemory/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c rcpp_wrappers_fit.cpp -o rcpp_wrappers_fit.o
In file included from /data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:18,
from /data/gannet/ripley/R/test-dev/BH/include/boost/shared_ptr.hpp:17,
from /data/gannet/ripley/R/test-dev/bigmemory/include/bigmemory/BigMatrix.h:10,
from /data/gannet/ripley/R/test-dev/bigmemory/include/bigmemory/MatrixAccessor.hpp:4,
from rcpp_wrappers_fit.cpp:1:
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
361 | explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
| ^~~~~~~~
In file included from /usr/local/gcc13/include/c++/13.2.0/memory:78,
from /data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/detail/shared_count.hpp:27:
/usr/local/gcc13/include/c++/13.2.0/bits/unique_ptr.h:65:28: note: declared here
65 | template<typename> class auto_ptr;
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:251:65: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
251 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
| ^~~~~~~~
/usr/local/gcc13/include/c++/13.2.0/bits/unique_ptr.h:65:28: note: declared here
65 | template<typename> class auto_ptr;
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:508:31: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
508 | explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
| ^~~~~~~~
/usr/local/gcc13/include/c++/13.2.0/bits/unique_ptr.h:65:28: note: declared here
65 | template<typename> class auto_ptr;
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:521:22: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
521 | shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
| ^~~~~~~~
/usr/local/gcc13/include/c++/13.2.0/bits/unique_ptr.h:65:28: note: declared here
65 | template<typename> class auto_ptr;
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:604:34: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
604 | shared_ptr & operator=( std::auto_ptr<Y> & r )
| ^~~~~~~~
/usr/local/gcc13/include/c++/13.2.0/bits/unique_ptr.h:65:28: note: declared here
65 | template<typename> class auto_ptr;
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:613:34: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
613 | shared_ptr & operator=( std::auto_ptr<Y> && r )
| ^~~~~~~~
/usr/local/gcc13/include/c++/13.2.0/bits/unique_ptr.h:65:28: note: declared here
65 | template<typename> class auto_ptr;
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function 'boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)':
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:615:38: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
615 | this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
| ^~~~~~~~
/usr/local/gcc13/include/c++/13.2.0/bits/unique_ptr.h:65:28: note: declared here
65 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from rcpp_wrappers_cv.cpp:15:
BinomialSolver.h: In instantiation of 'double BinomialSolver<TG>::get_test_loss(const std::vector<int>&) [with TG = Eigen::Map<const Eigen::Matrix<double, -1, -1> >]':
BinomialSolver.h:420:20: required from here
BinomialSolver.h:423:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
423 | for (int i = 0; i < test_idx.size(); ++i) {
| ~~^~~~~~~~~~~~~~~~~
In file included from rcpp_wrappers_cv.cpp:14:
GaussianSolver.h: In instantiation of 'double GaussianSolver<TG>::get_test_loss(const std::vector<int>&) [with TG = Eigen::Map<const Eigen::Matrix<double, -1, -1> >]':
GaussianSolver.h:346:20: required from here
GaussianSolver.h:349:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
349 | for (int i = 0; i < test_idx.size(); ++i) {
| ~~^~~~~~~~~~~~~~~~~
BinomialSolver.h: In instantiation of 'double BinomialSolver<TG>::get_test_loss(const std::vector<int>&) [with TG = Eigen::Map<Eigen::SparseMatrix<double, 0, int> >]':
BinomialSolver.h:420:20: required from here
BinomialSolver.h:423:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
423 | for (int i = 0; i < test_idx.size(); ++i) {
| ~~^~~~~~~~~~~~~~~~~
GaussianSolver.h: In instantiation of 'double GaussianSolver<TG>::get_test_loss(const std::vector<int>&) [with TG = Eigen::Map<Eigen::SparseMatrix<double, 0, int> >]':
GaussianSolver.h:346:20: required from here
GaussianSolver.h:349:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
349 | for (int i = 0; i < test_idx.size(); ++i) {
| ~~^~~~~~~~~~~~~~~~~
BinomialSolver.h: In instantiation of 'void BinomialSolver<TG>::update_working_set(double, double, double, int) [with TG = Eigen::Map<const Eigen::Matrix<double, -1, -1> >]':
BinomialSolver.h:207:9: required from 'int BinomialSolver<TG>::solve(double, double, double, int, int) [with TG = Eigen::Map<const Eigen::Matrix<double, -1, -1> >]'
BinomialSolver.h:182:9: required from here
BinomialSolver.h:410:93: warning: comparison of integer expressions of different signedness: 'std::vector<int>::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
410 | if (b_g[index] == 0 && b_gxe[index] == 0 && safe_set_g[index] && working_set.size() < working_set_size) {
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
Solver.h: In instantiation of 'double Solver<TG>::update_b_for_working_set(double, double, bool) [with TG = Eigen::Map<const Eigen::Matrix<double, -1, -1> >]':
BinomialSolver.h:232:48: required from 'int BinomialSolver<TG>::solve(double, double, double, int, int) [with TG = Eigen::Map<const Eigen::Matrix<double, -1, -1> >]'
BinomialSolver.h:182:9: required from here
Solver.h:278:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
278 | for (int k = 0; k < working_set.size(); ++k) {
| ~~^~~~~~~~~~~~~~~~~~~~
Solver.h:271:12: warning: unused variable 'b_0_old' [-Wunused-variable]
271 | double b_0_old, b_e_old, b_g_old, b_gxe_old, b_g_new;
| ^~~~~~~
Solver.h:271:21: warning: unused variable 'b_e_old' [-Wunused-variable]
271 | double b_0_old, b_e_old, b_g_old, b_gxe_old, b_g_new;
| ^~~~~~~
GaussianSolver.h: In instantiation of 'void GaussianSolver<TG>::update_working_set(double, double, double, int) [with TG = Eigen::Map<const Eigen::Matrix<double, -1, -1> >]':
GaussianSolver.h:163:9: required from 'int GaussianSolver<TG>::solve(double, double, double, int, int) [with TG = Eigen::Map<const Eigen::Matrix<double, -1, -1> >]'
GaussianSolver.h:142:17: required from here
GaussianSolver.h:306:93: warning: comparison of integer expressions of different signedness: 'std::vector<int>::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
306 | if (b_g[index] == 0 && b_gxe[index] == 0 && safe_set_g[index] && working_set.size() < working_set_size) {
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
BinomialSolver.h: In instantiation of 'void BinomialSolver<TG>::update_working_set(double, double, double, int) [with TG = Eigen::Map<Eigen::SparseMatrix<double, 0, int> >]':
BinomialSolver.h:207:9: required from 'int BinomialSolver<TG>::solve(double, double, double, int, int) [with TG = Eigen::Map<Eigen::SparseMatrix<double, 0, int> >]'
BinomialSolver.h:182:9: required from here
BinomialSolver.h:410:93: warning: comparison of integer expressions of different signedness: 'std::vector<int>::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
410 | if (b_g[index] == 0 && b_gxe[index] == 0 && safe_set_g[index] && working_set.size() < working_set_size) {
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
Solver.h: In instantiation of 'double Solver<TG>::update_b_for_working_set(double, double, bool) [with TG = Eigen::Map<Eigen::SparseMatrix<double, 0, int> >]':
BinomialSolver.h:232:48: required from 'int BinomialSolver<TG>::solve(double, double, double, int, int) [with TG = Eigen::Map<Eigen::SparseMatrix<double, 0, int> >]'
BinomialSolver.h:182:9: required from here
Solver.h:278:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
278 | for (int k = 0; k < working_set.size(); ++k) {
| ~~^~~~~~~~~~~~~~~~~~~~
Solver.h:271:12: warning: unused variable 'b_0_old' [-Wunused-variable]
271 | double b_0_old, b_e_old, b_g_old, b_gxe_old, b_g_new;
| ^~~~~~~
Solver.h:271:21: warning: unused variable 'b_e_old' [-Wunused-variable]
271 | double b_0_old, b_e_old, b_g_old, b_gxe_old, b_g_new;
| ^~~~~~~
GaussianSolver.h: In instantiation of 'void GaussianSolver<TG>::update_working_set(double, double, double, int) [with TG = Eigen::Map<Eigen::SparseMatrix<double, 0, int> >]':
GaussianSolver.h:163:9: required from 'int GaussianSolver<TG>::solve(double, double, double, int, int) [with TG = Eigen::Map<Eigen::SparseMatrix<double, 0, int> >]'
GaussianSolver.h:142:17: required from here
GaussianSolver.h:306:93: warning: comparison of integer expressions of different signedness: 'std::vector<int>::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
306 | if (b_g[index] == 0 && b_gxe[index] == 0 && safe_set_g[index] && working_set.size() < working_set_size) {
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
BinomialSolver.h: In instantiation of 'void BinomialSolver<TG>::update_inner_nu(double, double) [with TG = Eigen::Map<const Eigen::Matrix<double, -1, -1> >]':
BinomialSolver.h:346:7: required from 'double BinomialSolver<TG>::check_inner_duality_gap(double, double) [with TG = Eigen::Map<const Eigen::Matrix<double, -1, -1> >]'
BinomialSolver.h:216:31: required from 'int BinomialSolver<TG>::solve(double, double, double, int, int) [with TG = Eigen::Map<const Eigen::Matrix<double, -1, -1> >]'
BinomialSolver.h:182:9: required from here
BinomialSolver.h:329:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
329 | for (int i = 0; i < working_set.size(); ++i) {
| ~~^~~~~~~~~~~~~~~~~~~~
GaussianSolver.h: In instantiation of 'double GaussianSolver<TG>::update_inner_nu(double, double) [with TG = Eigen::Map<const Eigen::Matrix<double, -1, -1> >]':
GaussianSolver.h:263:34: required from 'double GaussianSolver<TG>::check_duality_gap(double, double, bool) [with TG = Eigen::Map<const Eigen::Matrix<double, -1, -1> >]'
GaussianSolver.h:159:23: required from 'int GaussianSolver<TG>::solve(double, double, double, int, int) [with TG = Eigen::Map<const Eigen::Matrix<double, -1, -1> >]'
GaussianSolver.h:142:17: required from here
GaussianSolver.h:251:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
251 | for (int i = 0; i < working_set.size(); ++i) {
| ~~^~~~~~~~~~~~~~~~~~~~
BinomialSolver.h: In instantiation of 'void BinomialSolver<TG>::update_inner_nu(double, double) [with TG = Eigen::Map<Eigen::SparseMatrix<double, 0, int> >]':
BinomialSolver.h:346:7: required from 'double BinomialSolver<TG>::check_inner_duality_gap(double, double) [with TG = Eigen::Map<Eigen::SparseMatrix<double, 0, int> >]'
BinomialSolver.h:216:31: required from 'int BinomialSolver<TG>::solve(double, double, double, int, int) [with TG = Eigen::Map<Eigen::SparseMatrix<double, 0, int> >]'
BinomialSolver.h:182:9: required from here
BinomialSolver.h:329:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
329 | for (int i = 0; i < working_set.size(); ++i) {
| ~~^~~~~~~~~~~~~~~~~~~~
GaussianSolver.h: In instantiation of 'double GaussianSolver<TG>::update_inner_nu(double, double) [with TG = Eigen::Map<Eigen::SparseMatrix<double, 0, int> >]':
GaussianSolver.h:263:34: required from 'double GaussianSolver<TG>::check_duality_gap(double, double, bool) [with TG = Eigen::Map<Eigen::SparseMatrix<double, 0, int> >]'
GaussianSolver.h:159:23: required from 'int GaussianSolver<TG>::solve(double, double, double, int, int) [with TG = Eigen::Map<Eigen::SparseMatrix<double, 0, int> >]'
GaussianSolver.h:142:17: required from here
GaussianSolver.h:251:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
251 | for (int i = 0; i < working_set.size(); ++i) {
| ~~^~~~~~~~~~~~~~~~~~~~
In file included from rcpp_wrappers_fit.cpp:7:
Solver.h: In instantiation of 'void Solver<TG>::update_weighted_variables(bool) [with TG = Eigen::Map<Eigen::SparseMatrix<double, 0, int> >]':
GaussianSolver.h:117:32: required from 'void GaussianSolver<TG>::init() [with TG = Eigen::Map<Eigen::SparseMatrix<double, 0, int> >]'
GaussianSolver.h:112:7: required from 'GaussianSolver<TG>::GaussianSolver(const MapSparseMat&, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >&, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >&, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >&, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >&, bool) [with TG = Eigen::Map<Eigen::SparseMatrix<double, 0, int> >; MapSparseMat = Eigen::Map<Eigen::SparseMatrix<double, 0, int> >]'
rcpp_wrappers_fit.cpp:30:7: required from 'Rcpp::List fitModelRcpp(const TG&, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >&, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >&, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >&, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >&, const Rcpp::LogicalVector&, const Eigen::VectorXd&, double, const std::string&, double, int, int) [with TG = Eigen::Map<Eigen::SparseMatrix<double, 0, int> >; Rcpp::List = Rcpp::Vector<19>; Rcpp::LogicalVector = Rcpp::Vector<10, Rcpp::PreserveStorage>; Eigen::VectorXd = Eigen::Matrix<double, -1, 1>; std::string = std::__cxx11::basic_string<char>]'
rcpp_wrappers_fit.cpp:149:38: required from here
Solver.h:237:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
237 | for (int j = 0; j < working_set.size(); ++j) {
| ~~^~~~~~~~~~~~~~~~~~~~
Solver.h: In instantiation of 'void Solver<TG>::update_weighted_variables(bool) [with TG = Eigen::Map<const Eigen::Matrix<double, -1, -1> >]':
GaussianSolver.h:117:32: required from 'void GaussianSolver<TG>::init() [with TG = Eigen::Map<const Eigen::Matrix<double, -1, -1> >]'
GaussianSolver.h:94:7: required from 'GaussianSolver<TG>::GaussianSolver(const MapMat&, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >&, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >&, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >&, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >&, bool) [with TG = Eigen::Map<const Eigen::Matrix<double, -1, -1> >; MapMat = Eigen::Map<const Eigen::Matrix<double, -1, -1> >]'
rcpp_wrappers_fit.cpp:30:7: required from 'Rcpp::List fitModelRcpp(const TG&, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >&, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >&, const Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >&, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >&, const Rcpp::LogicalVector&, const Eigen::VectorXd&, double, const std::string&, double, int, int) [with TG = Eigen::Map<const Eigen::Matrix<double, -1, -1> >; Rcpp::List = Rcpp::Vector<19>; Rcpp::LogicalVector = Rcpp::Vector<10, Rcpp::PreserveStorage>; Eigen::VectorXd = Eigen::Matrix<double, -1, 1>; std::string = std::__cxx11::basic_string<char>]'
rcpp_wrappers_fit.cpp:156:32: required from here
Solver.h:237:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
In file included from rcpp_wrappers_fit.cpp:9:
BinomialSolver.h: In instantiation of 'double BinomialSolver<TG>::get_test_loss(const std::vector<int>&) [with TG = Eigen::Map<const Eigen::Matrix<double, -1, -1> >]':
BinomialSolver.h:420:20: required from here
BinomialSolver.h:423:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
423 | for (int i = 0; i < test_idx.size(); ++i) {
| ~~^~~~~~~~~~~~~~~~~
In file included from rcpp_wrappers_fit.cpp:8:
GaussianSolver.h: In instantiation of 'double GaussianSolver<TG>::get_test_loss(const std::vector<int>&) [with TG = Eigen::Map<const Eigen::Matrix<double, -1, -1> >]':
GaussianSolver.h:346:20: required from here
GaussianSolver.h:349:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
349 | for (int i = 0; i < test_idx.size(); ++i) {
| ~~^~~~~~~~~~~~~~~~~
BinomialSolver.h: In instantiation of 'double BinomialSolver<TG>::get_test_loss(const std::vector<int>&) [with TG = Eigen::Map<Eigen::SparseMatrix<double, 0, int> >]':
BinomialSolver.h:420:20: required from here
BinomialSolver.h:423:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
423 | for (int i = 0; i < test_idx.size(); ++i) {
| ~~^~~~~~~~~~~~~~~~~
GaussianSolver.h: In instantiation of 'double GaussianSolver<TG>::get_test_loss(const std::vector<int>&) [with TG = Eigen::Map<Eigen::SparseMatrix<double, 0, int> >]':
GaussianSolver.h:346:20: required from here
GaussianSolver.h:349:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
349 | for (int i = 0; i < test_idx.size(); ++i) {
| ~~^~~~~~~~~~~~~~~~~
BinomialSolver.h: In instantiation of 'void BinomialSolver<TG>::update_working_set(double, double, double, int) [with TG = Eigen::Map<const Eigen::Matrix<double, -1, -1> >]':
BinomialSolver.h:207:9: required from 'int BinomialSolver<TG>::solve(double, double, double, int, int) [with TG = Eigen::Map<const Eigen::Matrix<double, -1, -1> >]'
BinomialSolver.h:182:9: required from here
BinomialSolver.h:410:93: warning: comparison of integer expressions of different signedness: 'std::vector<int>::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
410 | if (b_g[index] == 0 && b_gxe[index] == 0 && safe_set_g[index] && working_set.size() < working_set_size) {
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
Solver.h: In instantiation of 'double Solver<TG>::update_b_for_working_set(double, double, bool) [with TG = Eigen::Map<const Eigen::Matrix<double, -1, -1> >]':
BinomialSolver.h:232:48: required from 'int BinomialSolver<TG>::solve(double, double, double, int, int) [with TG = Eigen::Map<const Eigen::Matrix<double, -1, -1> >]'
BinomialSolver.h:182:9: required from here
Solver.h:278:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
278 | for (int k = 0; k < working_set.size(); ++k) {
| ~~^~~~~~~~~~~~~~~~~~~~
Solver.h:271:12: warning: unused variable 'b_0_old' [-Wunused-variable]
271 | double b_0_old, b_e_old, b_g_old, b_gxe_old, b_g_new;
| ^~~~~~~
Solver.h:271:21: warning: unused variable 'b_e_old' [-Wunused-variable]
271 | double b_0_old, b_e_old, b_g_old, b_gxe_old, b_g_new;
| ^~~~~~~
GaussianSolver.h: In instantiation of 'void GaussianSolver<TG>::update_working_set(double, double, double, int) [with TG = Eigen::Map<const Eigen::Matrix<double, -1, -1> >]':
GaussianSolver.h:163:9: required from 'int GaussianSolver<TG>::solve(double, double, double, int, int) [with TG = Eigen::Map<const Eigen::Matrix<double, -1, -1> >]'
GaussianSolver.h:142:17: required from here
GaussianSolver.h:306:93: warning: comparison of integer expressions of different signedness: 'std::vector<int>::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
306 | if (b_g[index] == 0 && b_gxe[index] == 0 && safe_set_g[index] && working_set.size() < working_set_size) {
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
BinomialSolver.h: In instantiation of 'void BinomialSolver<TG>::update_working_set(double, double, double, int) [with TG = Eigen::Map<Eigen::SparseMatrix<double, 0, int> >]':
BinomialSolver.h:207:9: required from 'int BinomialSolver<TG>::solve(double, double, double, int, int) [with TG = Eigen::Map<Eigen::SparseMatrix<double, 0, int> >]'
BinomialSolver.h:182:9: required from here
BinomialSolver.h:410:93: warning: comparison of integer expressions of different signedness: 'std::vector<int>::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
410 | if (b_g[index] == 0 && b_gxe[index] == 0 && safe_set_g[index] && working_set.size() < working_set_size) {
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
Solver.h: In instantiation of 'double Solver<TG>::update_b_for_working_set(double, double, bool) [with TG = Eigen::Map<Eigen::SparseMatrix<double, 0, int> >]':
BinomialSolver.h:232:48: required from 'int BinomialSolver<TG>::solve(double, double, double, int, int) [with TG = Eigen::Map<Eigen::SparseMatrix<double, 0, int> >]'
BinomialSolver.h:182:9: required from here
Solver.h:278:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
278 | for (int k = 0; k < working_set.size(); ++k) {
| ~~^~~~~~~~~~~~~~~~~~~~
Solver.h:271:12: warning: unused variable 'b_0_old' [-Wunused-variable]
271 | double b_0_old, b_e_old, b_g_old, b_gxe_old, b_g_new;
| ^~~~~~~
Solver.h:271:21: warning: unused variable 'b_e_old' [-Wunused-variable]
271 | double b_0_old, b_e_old, b_g_old, b_gxe_old, b_g_new;
| ^~~~~~~
GaussianSolver.h: In instantiation of 'void GaussianSolver<TG>::update_working_set(double, double, double, int) [with TG = Eigen::Map<Eigen::SparseMatrix<double, 0, int> >]':
GaussianSolver.h:163:9: required from 'int GaussianSolver<TG>::solve(double, double, double, int, int) [with TG = Eigen::Map<Eigen::SparseMatrix<double, 0, int> >]'
GaussianSolver.h:142:17: required from here
GaussianSolver.h:306:93: warning: comparison of integer expressions of different signedness: 'std::vector<int>::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
306 | if (b_g[index] == 0 && b_gxe[index] == 0 && safe_set_g[index] && working_set.size() < working_set_size) {
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
BinomialSolver.h: In instantiation of 'void BinomialSolver<TG>::update_inner_nu(double, double) [with TG = Eigen::Map<const Eigen::Matrix<double, -1, -1> >]':
BinomialSolver.h:346:7: required from 'double BinomialSolver<TG>::check_inner_duality_gap(double, double) [with TG = Eigen::Map<const Eigen::Matrix<double, -1, -1> >]'
BinomialSolver.h:216:31: required from 'int BinomialSolver<TG>::solve(double, double, double, int, int) [with TG = Eigen::Map<const Eigen::Matrix<double, -1, -1> >]'
BinomialSolver.h:182:9: required from here
BinomialSolver.h:329:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
329 | for (int i = 0; i < working_set.size(); ++i) {
| ~~^~~~~~~~~~~~~~~~~~~~
GaussianSolver.h: In instantiation of 'double GaussianSolver<TG>::update_inner_nu(double, double) [with TG = Eigen::Map<const Eigen::Matrix<double, -1, -1> >]':
GaussianSolver.h:263:34: required from 'double GaussianSolver<TG>::check_duality_gap(double, double, bool) [with TG = Eigen::Map<const Eigen::Matrix<double, -1, -1> >]'
GaussianSolver.h:159:23: required from 'int GaussianSolver<TG>::solve(double, double, double, int, int) [with TG = Eigen::Map<const Eigen::Matrix<double, -1, -1> >]'
GaussianSolver.h:142:17: required from here
GaussianSolver.h:251:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
251 | for (int i = 0; i < working_set.size(); ++i) {
| ~~^~~~~~~~~~~~~~~~~~~~
BinomialSolver.h: In instantiation of 'void BinomialSolver<TG>::update_inner_nu(double, double) [with TG = Eigen::Map<Eigen::SparseMatrix<double, 0, int> >]':
BinomialSolver.h:346:7: required from 'double BinomialSolver<TG>::check_inner_duality_gap(double, double) [with TG = Eigen::Map<Eigen::SparseMatrix<double, 0, int> >]'
BinomialSolver.h:216:31: required from 'int BinomialSolver<TG>::solve(double, double, double, int, int) [with TG = Eigen::Map<Eigen::SparseMatrix<double, 0, int> >]'
BinomialSolver.h:182:9: required from here
BinomialSolver.h:329:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
329 | for (int i = 0; i < working_set.size(); ++i) {
| ~~^~~~~~~~~~~~~~~~~~~~
GaussianSolver.h: In instantiation of 'double GaussianSolver<TG>::update_inner_nu(double, double) [with TG = Eigen::Map<Eigen::SparseMatrix<double, 0, int> >]':
GaussianSolver.h:263:34: required from 'double GaussianSolver<TG>::check_duality_gap(double, double, bool) [with TG = Eigen::Map<Eigen::SparseMatrix<double, 0, int> >]'
GaussianSolver.h:159:23: required from 'int GaussianSolver<TG>::solve(double, double, double, int, int) [with TG = Eigen::Map<Eigen::SparseMatrix<double, 0, int> >]'
GaussianSolver.h:142:17: required from here
GaussianSolver.h:251:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
251 | for (int i = 0; i < working_set.size(); ++i) {
| ~~^~~~~~~~~~~~~~~~~~~~
g++-13 -std=gnu++11 -shared -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o gesso.so RcppExports.o rcpp_compute_grid.o rcpp_wrappers_cv.o rcpp_wrappers_fit.o -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/gesso/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/gesso/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/gesso/src'
installing to /data/gannet/ripley/R/packages/tests-devel/gesso.Rcheck/00LOCK-gesso/00new/gesso/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (gesso)