* installing *source* package ‘gdalcubes’ ... ** package ‘gdalcubes’ successfully unpacked and MD5 sums checked ** using staged installation configure: CC: gcc-13 configure: CXX: g++-13 -std=gnu++11 checking for gdal-config... /usr/local/bin/gdal-config checking gdal-config usability... yes configure: GDAL: 3.4.3 checking GDAL version >= 2.0.1... yes checking GDAL version != 3.6.0... yes checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether g++-13 -std=gnu++11 accepts -g... yes checking for g++-13 -std=gnu++11 option to enable C++11 features... none needed checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for gdal.h... yes checking GDAL: linking with --libs only... yes checking GDAL: /usr/local/share/gdal/pcs.csv readable... no checking GDAL: checking whether PROJ is available for linking:... yes checking GDAL: checking whether PROJ is available fur running:... yes configure: GDAL: 3.4.3 configure: pkg-config proj exists, will use it configure: using proj.h. configure: PROJ: 8.2.1 checking PROJ: checking whether PROJ and sqlite3 are available for linking:... yes checking for nc-config... yes netcdf.m4: about to set rpath, here is source string: >-L/usr/lib64 -lnetcdf< netcdf.m4: final rpath: -Wl,-rpath,/usr/lib64 Netcdf library version: netCDF 4.8.1 Netcdf library has version 4 interface present: yes Netcdf library was compiled with C compiler: gcc configure: Package CPP flags: -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -DR_PACKAGE -DGDALCUBES_NO_SWARM configure: Package LIBS: -L/usr/local/lib64 -lgdal -L/usr/local/lib64 -lproj -Wl,-rpath,/usr/lib64 -L/usr/lib64 -lnetcdf -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu configure: creating ./config.status config.status: creating src/Makevars ** libs using C++ compiler: ‘g++-13 (GCC) 13.2.0’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/gdalcubes/src' g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c gdalcubes/src/aggregate_time.cpp -o gdalcubes/src/aggregate_time.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c gdalcubes/src/aggregate_space.cpp -o gdalcubes/src/aggregate_space.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c gdalcubes/src/apply_pixel.cpp -o gdalcubes/src/apply_pixel.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c gdalcubes/src/config.cpp -o gdalcubes/src/config.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c gdalcubes/src/collection_format.cpp -o gdalcubes/src/collection_format.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c gdalcubes/src/crop.cpp -o gdalcubes/src/crop.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c gdalcubes/src/datetime.cpp -o gdalcubes/src/datetime.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c gdalcubes/src/filesystem.cpp -o gdalcubes/src/filesystem.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c gdalcubes/src/utils.cpp -o gdalcubes/src/utils.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c gdalcubes/src/cube.cpp -o gdalcubes/src/cube.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c gdalcubes/src/cube_factory.cpp -o gdalcubes/src/cube_factory.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c gdalcubes/src/error.cpp -o gdalcubes/src/error.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c gdalcubes/src/extract_geom.cpp -o gdalcubes/src/extract_geom.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c gdalcubes/src/image_collection.cpp -o gdalcubes/src/image_collection.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c gdalcubes/src/image_collection_cube.cpp -o gdalcubes/src/image_collection_cube.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c gdalcubes/src/image_collection_ops.cpp -o gdalcubes/src/image_collection_ops.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c gdalcubes/src/join_bands.cpp -o gdalcubes/src/join_bands.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c gdalcubes/src/ncdf_cube.cpp -o gdalcubes/src/ncdf_cube.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c gdalcubes/src/select_time.cpp -o gdalcubes/src/select_time.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c gdalcubes/src/reduce_time.cpp -o gdalcubes/src/reduce_time.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c gdalcubes/src/reduce_space.cpp -o gdalcubes/src/reduce_space.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c gdalcubes/src/window_space.cpp -o gdalcubes/src/window_space.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c gdalcubes/src/window_time.cpp -o gdalcubes/src/window_time.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c gdalcubes/src/select_bands.cpp -o gdalcubes/src/select_bands.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c gdalcubes/src/slice_time.cpp -o gdalcubes/src/slice_time.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c gdalcubes/src/slice_space.cpp -o gdalcubes/src/slice_space.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c gdalcubes/src/filter_pixel.cpp -o gdalcubes/src/filter_pixel.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c gdalcubes/src/filter_geom.cpp -o gdalcubes/src/filter_geom.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c gdalcubes/src/fill_time.cpp -o gdalcubes/src/fill_time.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c gdalcubes/src/rename_bands.cpp -o gdalcubes/src/rename_bands.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c gdalcubes/src/simple_cube.cpp -o gdalcubes/src/simple_cube.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c gdalcubes/src/stream.cpp -o gdalcubes/src/stream.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c gdalcubes/src/stream_reduce_time.cpp -o gdalcubes/src/stream_reduce_time.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c gdalcubes/src/stream_reduce_space.cpp -o gdalcubes/src/stream_reduce_space.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c gdalcubes/src/stream_apply_pixel.cpp -o gdalcubes/src/stream_apply_pixel.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c gdalcubes/src/stream_apply_time.cpp -o gdalcubes/src/stream_apply_time.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c gdalcubes/src/view.cpp -o gdalcubes/src/view.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c gdalcubes/src/dummy.cpp -o gdalcubes/src/dummy.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c gdalcubes/src/warp.cpp -o gdalcubes/src/warp.o gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c gdalcubes/src/external/tinyexpr/tinyexpr.c -o gdalcubes/src/external/tinyexpr/tinyexpr.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c gdalcubes/src/external/tiny-process-library/process.cpp -o gdalcubes/src/external/tiny-process-library/process.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c gdalcubes/src/external/tiny-process-library/process_unix.cpp -o gdalcubes/src/external/tiny-process-library/process_unix.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c gdalcubes/src/external/json11/json11.cpp -o gdalcubes/src/external/json11/json11.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c multiprocess.cpp -o multiprocess.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c error.cpp -o error.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c gdalcubes.cpp -o gdalcubes.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c RcppExports.cpp -o RcppExports.o g++-13 -std=gnu++17 -shared -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o gdalcubes.so gdalcubes/src/aggregate_time.o gdalcubes/src/aggregate_space.o gdalcubes/src/apply_pixel.o gdalcubes/src/config.o gdalcubes/src/collection_format.o gdalcubes/src/crop.o gdalcubes/src/datetime.o gdalcubes/src/filesystem.o gdalcubes/src/utils.o gdalcubes/src/cube.o gdalcubes/src/cube_factory.o gdalcubes/src/error.o gdalcubes/src/extract_geom.o gdalcubes/src/image_collection.o gdalcubes/src/image_collection_cube.o gdalcubes/src/image_collection_ops.o gdalcubes/src/join_bands.o gdalcubes/src/ncdf_cube.o gdalcubes/src/select_time.o gdalcubes/src/reduce_time.o gdalcubes/src/reduce_space.o gdalcubes/src/window_space.o gdalcubes/src/window_time.o gdalcubes/src/select_bands.o gdalcubes/src/slice_time.o gdalcubes/src/slice_space.o gdalcubes/src/filter_pixel.o gdalcubes/src/filter_geom.o gdalcubes/src/fill_time.o gdalcubes/src/rename_bands.o gdalcubes/src/simple_cube.o gdalcubes/src/stream.o gdalcubes/src/stream_reduce_time.o gdalcubes/src/stream_reduce_space.o gdalcubes/src/stream_apply_pixel.o gdalcubes/src/stream_apply_time.o gdalcubes/src/view.o gdalcubes/src/dummy.o gdalcubes/src/warp.o gdalcubes/src/external/tinyexpr/tinyexpr.o gdalcubes/src/external/tiny-process-library/process.o gdalcubes/src/external/tiny-process-library/process_unix.o gdalcubes/src/external/json11/json11.o multiprocess.o error.o gdalcubes.o RcppExports.o -L/usr/local/lib64 -lgdal -L/usr/local/lib64 -lproj -Wl,-rpath,/usr/lib64 -L/usr/lib64 -lnetcdf -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/gdalcubes/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/gdalcubes/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/gdalcubes/src' installing to /data/gannet/ripley/R/packages/tests-devel/gdalcubes.Rcheck/00LOCK-gdalcubes/00new/gdalcubes/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gdalcubes)