- using R Under development (unstable) (2025-08-14 r88595)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)
GNU Fortran (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)
- running under: Fedora Linux 42 (Workstation Edition)
- using session charset: UTF-8
- using option ‘--no-stop-on-test-error’
- checking for file ‘gam/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘gam’ version ‘1.22-5’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘gam’ can be installed ... [25s/44s] OK
See the install log for details.
- used C compiler: ‘gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
- used Fortran compiler: ‘GNU Fortran (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
- checking package directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking whether startup messages can be suppressed ... OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [18s/41s] OK
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking line endings in Makefiles ... OK
- checking compilation flags in Makevars ... OK
- checking for GNU extensions in Makefiles ... OK
- checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
- checking use of PKG_*FLAGS in Makefiles ... OK
- checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
- checking pragmas in C/C++ headers and code ... OK
- checking compilation flags used ... OK
- checking compiled code ... OK
- checking usage of KIND in Fortran files ... OK
- checking examples ... OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... ERROR
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(gam)
Loading required package: splines
Loading required package: foreach
Loaded gam 1.22-5
>
> test_check("gam")
Start: y ~ s(x, 6) + z; AIC= 43.7495
Step:1 y ~ s(x, 6) ; AIC= 42.6681
Testing fit1
Testing fit2
Testing fit3
Testing fit4
Testing fit5
Testing fit6
Testing sum1
Testing an1
Testing an2
Testing step1
[ FAIL 2 | WARN 1 | SKIP 0 | PASS 8 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_example.R:45:5'): (code run outside of `test_that()`) ────────
objects[[x]] not equal to expected[[x]].
Component "family": Component "variance": Component "okLinks": Lengths (6, 5) differ (string compare on first 5)
Component "family": Component "dev.resids": Component "okLinks": Lengths (6, 5) differ (string compare on first 5)
Component "family": Component "aic": Component "okLinks": Lengths (6, 5) differ (string compare on first 5)
Component "family": Component "validmu": Component "okLinks": Lengths (6, 5) differ (string compare on first 5)
Component "family": Component "simulate": Component "okLinks": Lengths (6, 5) differ (string compare on first 5)
── Failure ('test_example.R:45:5'): (code run outside of `test_that()`) ────────
objects[[x]] not equal to expected[[x]].
Component "family": Component "variance": Component "okLinks": Lengths (6, 5) differ (string compare on first 5)
Component "family": Component "dev.resids": Component "okLinks": Lengths (6, 5) differ (string compare on first 5)
Component "family": Component "aic": Component "okLinks": Lengths (6, 5) differ (string compare on first 5)
Component "family": Component "validmu": Component "okLinks": Lengths (6, 5) differ (string compare on first 5)
Component "family": Component "simulate": Component "okLinks": Lengths (6, 5) differ (string compare on first 5)
[ FAIL 2 | WARN 1 | SKIP 0 | PASS 8 ]
Error: Test failures
Execution halted
- checking PDF version of manual ... [8s/21s] OK
- checking HTML version of manual ... OK
- checking for non-standard things in the check directory ... OK
- checking for detritus in the temp directory ... OK
- DONE
Status: 1 ERROR