* installing *source* package ‘fstcore’ ...
** package ‘fstcore’ successfully unpacked and MD5 sums checked
** using staged installation
1.8.0
Found pkg-config cflags and libs for LZ4!
1.8.0
Found pkg-config cflags and libs for ZSTD!
** libs
using C++ compiler: ‘g++-13 (GCC) 13.2.0’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/fstcore/src'
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I. -Ifstlib -Ifstlib/LZ4 -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I. -Ifstlib -Ifstlib/LZ4 -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -c flex_store.cpp -o flex_store.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I. -Ifstlib -Ifstlib/LZ4 -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -c fst_blockrunner_char.cpp -o fst_blockrunner_char.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I. -Ifstlib -Ifstlib/LZ4 -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -c fst_compress.cpp -o fst_compress.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I. -Ifstlib -Ifstlib/LZ4 -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -c fst_error.cpp -o fst_error.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I. -Ifstlib -Ifstlib/LZ4 -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -c fst_table.cpp -o fst_table.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I. -Ifstlib -Ifstlib/LZ4 -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -c openmp.cpp -o openmp.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I. -Ifstlib -Ifstlib/LZ4 -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -c versions.cpp -o versions.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I. -Ifstlib -Ifstlib/LZ4 -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -c fstlib/compression/compression.cpp -o fstlib/compression/compression.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I. -Ifstlib -Ifstlib/LZ4 -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -c fstlib/compression/compressor.cpp -o fstlib/compression/compressor.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I. -Ifstlib -Ifstlib/LZ4 -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -c fstlib/interface/openmphelper.cpp -o fstlib/interface/openmphelper.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I. -Ifstlib -Ifstlib/LZ4 -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -c fstlib/interface/fststore.cpp -o fstlib/interface/fststore.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I. -Ifstlib -Ifstlib/LZ4 -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -c fstlib/logical/logical_v10.cpp -o fstlib/logical/logical_v10.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I. -Ifstlib -Ifstlib/LZ4 -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -c fstlib/integer/integer_v8.cpp -o fstlib/integer/integer_v8.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I. -Ifstlib -Ifstlib/LZ4 -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -c fstlib/byte/byte_v12.cpp -o fstlib/byte/byte_v12.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I. -Ifstlib -Ifstlib/LZ4 -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -c fstlib/double/double_v9.cpp -o fstlib/double/double_v9.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I. -Ifstlib -Ifstlib/LZ4 -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -c fstlib/character/character_v6.cpp -o fstlib/character/character_v6.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I. -Ifstlib -Ifstlib/LZ4 -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -c fstlib/factor/factor_v7.cpp -o fstlib/factor/factor_v7.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I. -Ifstlib -Ifstlib/LZ4 -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -c fstlib/blockstreamer/blockstreamer_v2.cpp -o fstlib/blockstreamer/blockstreamer_v2.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I. -Ifstlib -Ifstlib/LZ4 -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -c fstlib/integer64/integer64_v11.cpp -o fstlib/integer64/integer64_v11.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I. -Ifstlib -Ifstlib/LZ4 -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -c fstlib/byteblock/byteblock_v13.cpp -o fstlib/byteblock/byteblock_v13.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I. -Ifstlib -Ifstlib/LZ4 -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c fstlib/LZ4/xxhash.c -o fstlib/LZ4/xxhash.o
gcc-ar rcs libCOMPRESSION.a fstlib/compression/compression.o fstlib/compression/compressor.o
gcc-ar rcs libFRAME.a fstlib/interface/openmphelper.o fstlib/interface/fststore.o fstlib/logical/logical_v10.o fstlib/integer/integer_v8.o fstlib/byte/byte_v12.o fstlib/double/double_v9.o fstlib/character/character_v6.o fstlib/factor/factor_v7.o fstlib/blockstreamer/blockstreamer_v2.o fstlib/integer64/integer64_v11.o fstlib/byteblock/byteblock_v13.o fstlib/LZ4/xxhash.o
g++-13 -std=gnu++17 -shared -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o fstcore.so RcppExports.o flex_store.o fst_blockrunner_char.o fst_compress.o fst_error.o fst_table.o openmp.o versions.o -fopenmp ./libFRAME.a ./libCOMPRESSION.a -llz4 -lzstd
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/fstcore/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/fstcore/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/fstcore/src'
installing to /data/gannet/ripley/R/packages/tests-devel/fstcore.Rcheck/00LOCK-fstcore/00new/fstcore/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (fstcore)