• using R Under development (unstable) (2026-08-20 r90438)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc (GCC) 16.1.1 20260515 (Red Hat 16.1.1-2)     GNU Fortran (GCC) 16.1.1 20260515 (Red Hat 16.1.1-2)
• running under: Fedora Linux 44 (Server Edition)
• using session charset: UTF-8 * current time: 2026-08-20 11:49:14 UTC
• using option ‘--no-stop-on-test-error’
• checking for file ‘forestecology/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘forestecology’ version ‘0.2.2’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘forestecology’ can be installed ... [10s/26s] OK See the install log for details.
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [10s/25s] OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [11s/24s] ERROR Running examples in ‘forestecology-Ex.R’ failed The error most likely occurred in: > ### Name: growth_ex > ### Title: Example growth data frame for small example > ### Aliases: growth_ex > ### Keywords: datasets > > ### ** Examples > > library(ggplot2) > library(dplyr) Attaching package: ‘dplyr’ The following objects are masked from ‘package:stats’:     filter, lag The following objects are masked from ‘package:base’:     intersect, setdiff, setequal, union > library(sf) Linking to GEOS 3.14.1, GDAL 3.12.4, PROJ 9.8.1; sf_use_s2() is TRUE > library(sfheaders) > library(blockCV) blockCV 4.0.0 > > growth_ex %>% + ggplot() + + geom_sf() > > growth_ex %>% + group_by(sp) %>% + summarize(mean(growth)) Simple feature collection with 2 features and 2 fields Geometry type: MULTIPOINT Dimension: XY Bounding box: xmin: 0.75 ymin: 0.75 xmax: 8.75 ymax: 4.5 CRS: NA # A tibble: 2 × 3   sp `mean(growth)` geometry   <fct> <dbl> <MULTIPOINT> 1 american_beech NA ((1.5 2.5), (3 1.5), (5.5 4.5), (8.5 0.75), (8.… 2 sugar_maple 0.920 ((0.75 2.5), (1.75 2.25), (3.25 1.75), (8 1.5),… > > # Add buffer > growth_spatial_ex <- growth_ex %>% + add_buffer_variable(direction = "in", size = 1, region = study_region_ex) > > # Add cross-validation folds > fold1 <- rbind(c(0, 0), c(5, 0), c(5, 5), c(0, 5), c(0, 0)) > fold2 <- rbind(c(5, 0), c(10, 0), c(10, 5), c(5, 5), c(5, 0)) > blocks <- bind_rows( + sf_polygon(fold1), + sf_polygon(fold2) + ) %>% + mutate(foldID = c(1, 2)) > > SpatialBlock_ex <- spatialBlock( + speciesData = growth_ex, + verbose = FALSE, + k = 2, + selection = "systematic", + blocks = blocks + ) Error in spatialBlock(speciesData = growth_ex, verbose = FALSE, k = 2, :   could not find function "spatialBlock" Execution halted
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... ERROR   Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output:   > library(testthat)   > library(forestecology)   >   > test_check("forestecology")      Attaching package: 'dplyr'      The following objects are masked from 'package:stats':          filter, lag      The following objects are masked from 'package:base':          intersect, setdiff, setequal, union      blockCV 4.0.0   Saving _problems/test-readme-45.R   [ FAIL 1 | WARN 2 | SKIP 0 | PASS 11 ]      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test-readme.R:42:3'): readme code works ─────────────────────────────   <functionNotFoundError/objectNotFoundError/error/condition>   Error in `spatialBlock(speciesData = growth_ex, k = 2, selection = "systematic", blocks = blocks_ex, showBlocks = FALSE, verbose = FALSE)`: could not find function "spatialBlock"      [ FAIL 1 | WARN 2 | SKIP 0 | PASS 11 ]   Error:   ! Test failures.   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [10s/24s] ERROR Error(s) in re-building vignettes: --- re-building ‘forestecology.Rmd’ using rmarkdown Quitting from forestecology.Rmd:130-138 [unnamed-chunk-8] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error: ! 'spatialBlock' is not an exported object from 'namespace:blockCV' ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'forestecology.Rmd' failed with diagnostics: 'spatialBlock' is not an exported object from 'namespace:blockCV' --- failed re-building ‘forestecology.Rmd’ SUMMARY: processing the following file failed:   ‘forestecology.Rmd’ Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... OK
• checking HTML version of manual ... OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 3 ERRORs