* installing *source* package ‘float’ ...
** package ‘float’ successfully unpacked and MD5 sums checked
** using staged installation
checking for gcc... gcc-13
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc-13 accepts -g... yes
checking for gcc-13 option to enable C11 features... none needed
checking for sinf in -lm... yes
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking whether byte ordering is bigendian... no
checking size of int... 4
checking how to run the C preprocessor... gcc-13 -E
checking for gcc-13 option to support OpenMP... -fopenmp
checking for echo... yes
checking for grep... yes
checking for sgemm_ in -lRblas... no
checking for sgetrf_ in -lRblas... no
checking for sgemm_ in -lopenblas... no
checking for sgemm_ in -lmkl... no
checking for sgemm_ in -latlas... no
checking for sgemm_ in -lblas... yes
checking for sgetrf_ in -lopenblas... no
checking for sgetrf_ in -lmkl... no
checking for sgetrf_ in -latlas... no
checking for sgetrf_ in -llapack... yes
******************* Results of float package configure *******************
* OpenMP Report:
>> OPENMP_CFLAGS=-fopenmp
>> OMPFLAGS_C=$(SHLIB_OPENMP_CFLAGS)
>> OMPFLAGS_F=$(SHLIB_OPENMP_FFLAGS)
* byte order: little endian
* using system BLAS library
>> BLAS_LIBFLAGS=-lblas
* using system LAPACK library
>> LAPACK_LIBFLAGS=-llapack
*************************************************************************
configure: creating ./config.status
config.status: creating src/Makevars
config.status: creating src/endianness.h
config.status: creating R/02-libflags.r
config.status: creating src/config.h
** libs
using C compiler: ‘gcc-13 (GCC) 13.2.0’
using Fortran compiler: ‘GNU Fortran (GCC) 13.2.0’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/float/src'
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c backsolve.c -o backsolve.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c binary.c -o binary.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c chol.c -o chol.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c chol2inv.c -o chol2inv.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c colSums.c -o colSums.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c cond.c -o cond.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c converters.c -o converters.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c crossprod.c -o crossprod.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c eigen.c -o eigen.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c extremes.c -o extremes.o
extremes.c: In function 'R_whichmin_spm':
extremes.c:140:20: warning: 'which' may be used uninitialized [-Wmaybe-uninitialized]
140 | REAL(ret)[0] = which;
| ~~~~~~~~~~~~~^~~~~~~
extremes.c:110:10: note: 'which' was declared here
110 | size_t which;
| ^~~~~
extremes.c: In function 'R_whichmax_spm':
extremes.c:186:20: warning: 'which' may be used uninitialized [-Wmaybe-uninitialized]
186 | REAL(ret)[0] = which;
| ~~~~~~~~~~~~~^~~~~~~
extremes.c:156:10: note: 'which' was declared here
156 | size_t which;
| ^~~~~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c float_native.c -o float_native.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c isSymmetric.c -o isSymmetric.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c machine.c -o machine.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c math.c -o math.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c matmult.c -o matmult.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c NA.c -o NA.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c norm.c -o norm.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c qr.c -o qr.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c rand.c -o rand.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c scale.c -o scale.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sign.c -o sign.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c solve.c -o solve.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sum.c -o sum.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c svd.c -o svd.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sweep.c -o sweep.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c xpose.c -o xpose.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c utils/matmult.c -o utils/matmult.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c utils/symmetrize.c -o utils/symmetrize.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c utils/xpose.c -o utils/xpose.o
gfortran-13 -fopenmp -g -O2 -mtune=native -Wall -pedantic -msse2 -mfpmath=sse -fpic -g -O2 -mtune=native -Wall -pedantic -c slapack_wrap.f -o slapack_wrap.o
gcc-13 -shared -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -fpic -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o float.so backsolve.o binary.o chol.o chol2inv.o colSums.o cond.o converters.o crossprod.o eigen.o extremes.o float_native.o isSymmetric.o machine.o math.o matmult.o NA.o norm.o qr.o rand.o scale.o sign.o solve.o sum.o svd.o sweep.o xpose.o utils/matmult.o utils/symmetrize.o utils/xpose.o slapack_wrap.o -llapack -lblas -lgfortran -lm -lquadmath -fopenmp -lgfortran -lm -lquadmath
gcc-ar crs libfloat.a backsolve.o binary.o chol.o chol2inv.o colSums.o cond.o converters.o crossprod.o eigen.o extremes.o float_native.o isSymmetric.o machine.o math.o matmult.o NA.o norm.o qr.o rand.o scale.o sign.o solve.o sum.o svd.o sweep.o xpose.o utils/matmult.o utils/symmetrize.o utils/xpose.o slapack_wrap.o
gcc-ranlib libfloat.a
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/float/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/float/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/float/src'
installing via 'install.libs.R' to /data/gannet/ripley/R/packages/tests-devel/float.Rcheck/00LOCK-float/00new/float
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for ‘backsolve’ from package ‘base’ in package ‘float’
Creating a generic function for ‘forwardsolve’ from package ‘base’ in package ‘float’
Creating a generic function for ‘chol2inv’ from ‘base’ in package ‘float’
(from the saved implicit definition)
Creating a generic function for ‘chol2inv’ from package ‘base’ in package ‘float’
Creating a generic function for ‘colSums’ from package ‘base’ in package ‘float’
Creating a generic function for ‘rowSums’ from package ‘base’ in package ‘float’
Creating a generic function for ‘colMeans’ from package ‘base’ in package ‘float’
Creating a generic function for ‘rowMeans’ from package ‘base’ in package ‘float’
Creating a generic function for ‘rcond’ from ‘base’ in package ‘float’
(from the saved implicit definition)
Creating a generic function for ‘rcond’ from package ‘base’ in package ‘float’
Creating a generic function for ‘typeof’ from package ‘base’ in package ‘float’
Creating a generic function for ‘storage.mode’ from package ‘base’ in package ‘float’
Creating a generic function for ‘diag’ from package ‘base’ in package ‘float’
Creating a generic function for ‘nrow’ from package ‘base’ in package ‘float’
Creating a generic function for ‘ncol’ from package ‘base’ in package ‘float’
Creating a generic function for ‘NROW’ from package ‘base’ in package ‘float’
Creating a generic function for ‘NCOL’ from package ‘base’ in package ‘float’
Creating a generic function for ‘eigen’ from package ‘base’ in package ‘float’
Creating a generic function for ‘which.min’ from package ‘base’ in package ‘float’
Creating a generic function for ‘which.max’ from package ‘base’ in package ‘float’
Creating a generic function for ‘rownames’ from package ‘base’ in package ‘float’
Creating a generic function for ‘rownames<-’ from package ‘base’ in package ‘float’
Creating a generic function for ‘colnames’ from package ‘base’ in package ‘float’
Creating a generic function for ‘colnames<-’ from package ‘base’ in package ‘float’
Creating a generic function for ‘norm’ from package ‘base’ in package ‘float’
Creating a generic function for ‘qr.Q’ from package ‘base’ in package ‘float’
Creating a generic function for ‘qr.R’ from package ‘base’ in package ‘float’
Creating a generic function for ‘qr.qy’ from package ‘base’ in package ‘float’
Creating a generic function for ‘qr.qty’ from package ‘base’ in package ‘float’
Creating a generic function for ‘La.svd’ from package ‘base’ in package ‘float’
Creating a generic function for ‘svd’ from ‘base’ in package ‘float’
(from the saved implicit definition)
Creating a generic function for ‘svd’ from package ‘base’ in package ‘float’
Creating a generic function for ‘sweep’ from package ‘base’ in package ‘float’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (float)