• using R Under development (unstable) (2026-10-06 r90644)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2)     GNU Fortran (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2)
• running under: Fedora Linux 44 (Server Edition)
• using session charset: UTF-8 * current time: 2026-10-08 08:28:05 UTC
• using option ‘--no-stop-on-test-error’
• checking for file ‘flextable/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘flextable’ version ‘0.10.1’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘flextable’ can be installed ... [16s/36s] OK See the install log for details.
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking whether startup messages can be suppressed ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [36s/80s] OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [6s/19s] ERROR Running examples in ‘flextable-Ex.R’ failed The error most likely occurred in: > ### Name: as_flextable.TableTree > ### Title: Transform an rtables object into a flextable > ### Aliases: as_flextable.TableTree as_flextable.ElementaryTable > > ### ** Examples > > if (require("rtables", character.only = TRUE, quietly = TRUE)) { + library(rtables) + + lyt <- basic_table(title = "Demographic Summary") %>% + split_cols_by("ARM") %>% + split_rows_by("SEX") %>% + analyze("AGE", afun = mean, format = "xx.x") + + tbl <- build_table(lyt, DM) + as_flextable(tbl) + } Attaching package: ‘formatters’ The following object is masked from ‘package:base’:     %||% Attaching package: ‘rtables’ The following object is masked from ‘package:utils’:     str Error in basic_table(title = "Demographic Summary") %>% split_cols_by("ARM") %>% :   could not find function "%>%" Execution halted
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [121s/192s] ERROR   Running ‘testthat.R’ [121s/192s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > library(testthat)   >   > test_check("flextable")   Loading required package: flextable      Attaching package: 'xtable'      The following object is masked from 'package:flextable':          align      This is mgcv 1.9-4. For overview type '?mgcv'.   Gu & Wahba 4 term additive model   [WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.   [WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.   Saving _problems/test-captions-rmd-128.R   [WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.   Saving _problems/test-captions-rmd-170.R   Loading required package: pdftools   Using poppler version 26.01.0      Attaching package: 'data.table'      The following object is masked from 'package:base':          %notin%      [WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.   `stat_bin()` using `bins = 30`. Pick better value `binwidth`.   [ FAIL 2 | WARN 0 | SKIP 1 | PASS 1090 ]      ══ Skipped tests (1) ═══════════════════════════════════════════════════════════   • On CRAN (1): 'test-quarto.R:1:1'      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Failure ('test-captions-rmd.R:128:3'): with word_document ───────────────────   Expected `bookmarks` to have length 0.   Actual length: 2.   ── Failure ('test-captions-rmd.R:170:3'): with word_document2 ──────────────────   Expected `bookmarks` to have length 3.   Actual length: 5.      [ FAIL 2 | WARN 0 | SKIP 1 | PASS 1090 ]   Error:   ! Test failures.   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... OK
• checking PDF version of manual ... [12s/15s] OK
• checking HTML version of manual ... [8s/10s] OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 2 ERRORs