* installing *source* package ‘flare’ ...
** package ‘flare’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (GCC) 13.2.0’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/flare/src'
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c SFGen.c -o SFGen.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c euc_proj.c -o euc_proj.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c mymath.c -o mymath.o
mymath.c: In function 'max_fabs_vc':
mymath.c:141:11: warning: variable 'cnt' set but not used [-Wunused-but-set-variable]
141 | int i,cnt;
| ^~~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c registerDynamicSymbol.c -o registerDynamicSymbol.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c slim_dantzig_ladm_scr.c -o slim_dantzig_ladm_scr.o
slim_dantzig_ladm_scr.c: In function 'slim_dantzig_ladm_scr':
slim_dantzig_ladm_scr.c:262:24: warning: variable 'zero' set but not used [-Wunused-but-set-variable]
262 | double T,T1,T2,rho,zero,eps,eps1,eps2,ilambda;
| ^~~~
slim_dantzig_ladm_scr.c:261:15: warning: variable 'ndata' set but not used [-Wunused-but-set-variable]
261 | int j,k,m,ndata,dim,nlambda,ite1,ite2,ite,max_ite0,max_ite1,max_ite2,num_scr,num_scr1,num_scr2,num_scr1_tmp,num_scr2_tmp,flag,flag1,flag2;
| ^~~~~
slim_dantzig_ladm_scr.c: In function 'slim_dantzig_ladm_scr2':
slim_dantzig_ladm_scr.c:411:21: warning: variable 'zero' set but not used [-Wunused-but-set-variable]
411 | double T,T1,rho,zero,eps,eps1,ilambda;
| ^~~~
slim_dantzig_ladm_scr.c:410:15: warning: variable 'ndata' set but not used [-Wunused-but-set-variable]
410 | int j,k,m,ndata,dim,nlambda,ite1,ite,max_ite0,max_ite1,num_scr,num_scr1,num_scr1_tmp,flag,flag1;
| ^~~~~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c slim_lad_ladm_scr_btr.c -o slim_lad_ladm_scr_btr.o
slim_lad_ladm_scr_btr.c: In function 'slim_lad_ladm_scr_btr':
slim_lad_ladm_scr_btr.c:236:24: warning: variable 'zero' set but not used [-Wunused-but-set-variable]
236 | double T,T1,T2,rho,zero,eps,eps1,eps2,ilambda,nrholamb;
| ^~~~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c slim_lasso_ladm_scr.c -o slim_lasso_ladm_scr.o
slim_lasso_ladm_scr.c: In function 'lasso_ladm_scr':
slim_lasso_ladm_scr.c:12:58: warning: variable 'epsT' set but not used [-Wunused-but-set-variable]
12 | double gap_ext,max_dif,beta_dif,threshold,tmpd,ratio,epsT;
| ^~~~
slim_lasso_ladm_scr.c:12:52: warning: variable 'ratio' set but not used [-Wunused-but-set-variable]
12 | double gap_ext,max_dif,beta_dif,threshold,tmpd,ratio,epsT;
| ^~~~~
slim_lasso_ladm_scr.c: In function 'slim_lasso_ladm_scr':
slim_lasso_ladm_scr.c:183:24: warning: variable 'zero' set but not used [-Wunused-but-set-variable]
183 | double T,T1,T2,rho,zero,eps,eps1,eps2,ilambda;
| ^~~~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c slim_lq_ladm_scr_btr.c -o slim_lq_ladm_scr_btr.o
slim_lq_ladm_scr_btr.c: In function 'slim_lq_ladm_scr_btr':
slim_lq_ladm_scr_btr.c:242:24: warning: variable 'zero' set but not used [-Wunused-but-set-variable]
242 | double T,T1,T2,rho,zero,eps,eps1,eps2,ilambda,nrholamb,qrtn;
| ^~~~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c slim_sqrt_ladm_scr.c -o slim_sqrt_ladm_scr.o
slim_sqrt_ladm_scr.c: In function 'sqrt_ladm_scr':
slim_sqrt_ladm_scr.c:12:92: warning: variable 'epsT' set but not used [-Wunused-but-set-variable]
12 | double gap_ext,max_dif,alp_dif,beta_dif,mu_dif,threshold,tmpd,alp_tild_sq,alp_th,ratio,epsT;
| ^~~~
slim_sqrt_ladm_scr.c:12:86: warning: variable 'ratio' set but not used [-Wunused-but-set-variable]
12 | double gap_ext,max_dif,alp_dif,beta_dif,mu_dif,threshold,tmpd,alp_tild_sq,alp_th,ratio,epsT;
| ^~~~~
slim_sqrt_ladm_scr.c: In function 'slim_sqrt_ladm_scr':
slim_sqrt_ladm_scr.c:285:24: warning: variable 'zero' set but not used [-Wunused-but-set-variable]
285 | double T,T1,T2,rho,zero,eps,eps1,eps2,ilambda,sqrtn,nrholamb;
| ^~~~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c slimh.c -o slimh.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sugm_clime_ladm_scr.c -o sugm_clime_ladm_scr.o
sugm_clime_ladm_scr.c: In function 'sugm_clime_ladm_scr':
sugm_clime_ladm_scr.c:11:24: warning: variable 'zero' set but not used [-Wunused-but-set-variable]
11 | double T,T1,T2,rho,zero,eps,eps1,eps2,ilambda;
| ^~~~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sugm_tiger_ladm_scr.c -o sugm_tiger_ladm_scr.o
sugm_tiger_ladm_scr.c: In function 'tiger_lasso_ladm_scr':
sugm_tiger_ladm_scr.c:12:58: warning: variable 'epsT' set but not used [-Wunused-but-set-variable]
12 | double gap_ext,max_dif,beta_dif,threshold,tmpd,ratio,epsT,tau0,tau1,tmp;
| ^~~~
sugm_tiger_ladm_scr.c:12:52: warning: variable 'ratio' set but not used [-Wunused-but-set-variable]
12 | double gap_ext,max_dif,beta_dif,threshold,tmpd,ratio,epsT,tau0,tau1,tmp;
| ^~~~~
sugm_tiger_ladm_scr.c: In function 'sugm_tiger_ladm_scr':
sugm_tiger_ladm_scr.c:205:24: warning: variable 'zero' set but not used [-Wunused-but-set-variable]
205 | double T,T1,T2,rho,zero,eps,eps1,eps2,ilambda,sqrtn,nrholamb,tau0;
| ^~~~
gcc-13 -shared -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -fpic -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o flare.so SFGen.o euc_proj.o mymath.o registerDynamicSymbol.o slim_dantzig_ladm_scr.o slim_lad_ladm_scr_btr.o slim_lasso_ladm_scr.o slim_lq_ladm_scr_btr.o slim_sqrt_ladm_scr.o slimh.o sugm_clime_ladm_scr.o sugm_tiger_ladm_scr.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/flare/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/flare/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/flare/src'
installing to /data/gannet/ripley/R/packages/tests-devel/flare.Rcheck/00LOCK-flare/00new/flare/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (flare)