* installing *source* package ‘fio’ ...
** this is package ‘fio’ version ‘0.1.6’
** package ‘fio’ successfully unpacked and MD5 sums checked
** using staged installation
Using cargo 1.86.0 (adf9b6ad1 2025-02-28)
Using rustc 1.86.0 (05f9846f8 2025-03-31) (Fedora 1.86.0-1.fc42)
Building for CRAN.
Writing `src/Makevars`.
`tools/config.R` has finished.
** libs
using C compiler: ‘gcc (GCC) 15.1.1 20250425 (Red Hat 15.1.1-1)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/fio/src'
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c entrypoint.c -o entrypoint.o
# unzip vendor.tar.xz if present
if [ -f ./rust/vendor.tar.xz ]; then \
tar xf rust/vendor.tar.xz && \
mkdir -p /data/gannet/ripley/R/packages/tests-devel/fio/src/.cargo && \
cp rust/vendor-config.toml /data/gannet/ripley/R/packages/tests-devel/fio/src/.cargo/config.toml; \
fi
export CARGO_HOME=/data/gannet/ripley/R/packages/tests-devel/fio/src/.cargo && \
export PATH="/data/gannet/ripley/bin:/usr/local/bin:/usr/local/texbin:/usr/sbin:.:/data/gannet/ripley/bin:/usr/local/texbin:/usr/local/bin:/usr/sbin:/usr/lib64/qt-3.3/bin:/usr/share/Modules/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/usr/lib64/openmpi/bin:/usr/lib64/openmpi/bin:/data/gannet/ripley/.cargo/bin" && \
RUSTFLAGS=" --print=native-static-libs" cargo build -j 2 --offline --lib --release --manifest-path=./rust/Cargo.toml --target-dir ./rust/target
warning: a `-j` argument was passed to Cargo but Cargo is also configured with an external jobserver in its environment, ignoring the `-j` parameter
Compiling proc-macro2 v1.0.94
Compiling libm v0.2.11
Compiling autocfg v1.4.0
Compiling unicode-ident v1.0.18
Compiling num-traits v0.2.19
Compiling quote v1.0.40
Compiling syn v2.0.100
Compiling bytemuck v1.22.0
Compiling rand_core v0.6.4
Compiling rand v0.8.5
Compiling num-complex v0.4.6
Compiling nano-gemm-codegen v0.1.0
Compiling crossbeam-utils v0.8.21
Compiling thiserror v2.0.12
Compiling reborrow v0.5.5
Compiling thiserror-impl v2.0.12
Compiling crossbeam-epoch v0.9.18
Compiling rayon-core v1.12.1
Compiling version_check v0.9.5
Compiling paste v1.0.15
Compiling crossbeam-deque v0.8.6
Compiling pulp v0.21.4
Compiling cfg-if v1.0.0
Compiling once_cell v1.21.3
Compiling either v1.15.0
Compiling bitflags v2.9.0
Compiling rayon v1.10.0
Compiling raw-cpuid v11.5.0
Compiling dyn-stack v0.13.0
Compiling memchr v2.7.4
Compiling ucd-trie v0.1.7
Compiling seq-macro v0.3.6
Compiling pest v2.8.0
Compiling nano-gemm-core v0.1.0
Compiling build-print v0.1.1
Compiling extendr-ffi v0.8.0 (https://github.com/extendr/extendr#1a8fe422)
Compiling gemm-common v0.18.2
Compiling pest_meta v2.8.0
Compiling nano-gemm-f32 v0.1.0
Compiling nano-gemm-f64 v0.1.0
Compiling nano-gemm-c64 v0.1.0
Compiling nano-gemm-c32 v0.1.0
Compiling pest_generator v2.8.0
Compiling num-integer v0.1.46
Compiling num-bigint v0.4.6
Compiling pest_derive v2.8.0
Compiling equator-macro v0.2.1
Compiling serde v1.0.219
Compiling libc v0.2.171
Compiling py_literal v0.4.0
Compiling equator v0.2.2
Compiling gemm-f64 v0.18.2
Compiling gemm-c32 v0.18.2
Compiling gemm-c64 v0.18.2
Compiling gemm-f32 v0.18.2
Compiling pulp v0.18.22
Compiling serde_derive v1.0.219
Compiling equator-macro v0.4.2
Compiling extendr-api v0.8.0 (https://github.com/extendr/extendr#1a8fe422)
Compiling byteorder v1.5.0
Compiling coe-rs v0.1.2
Compiling matrixcompare-core v0.1.0
Compiling faer-entity v0.19.2
Compiling matrixcompare v0.3.0
Compiling npyz v0.8.3
Compiling equator v0.4.2
Compiling nano-gemm v0.1.2
Compiling gemm v0.18.2
Compiling dyn-stack v0.10.0
Compiling rand_distr v0.4.3
Compiling extendr-macros v0.8.0 (https://github.com/extendr/extendr#1a8fe422)
Compiling dbgf v0.1.2
Compiling num_cpus v1.16.0
Compiling faer v0.19.4
Compiling fio v0.1.2 (/data/gannet/ripley/R/packages/tests-devel/fio/src/rust)
note: Link against the following native artifacts when linking against this static library. The order and any duplication can be significant on some platforms.
note: native-static-libs: -lR -lgcc_s -lutil -lrt -lpthread -lm -ldl -lc
Finished `release` profile [optimized] target(s) in 4m 51s
# Always clean up CARGOTMP
rm -Rf /data/gannet/ripley/R/packages/tests-devel/fio/src/.cargo;
gcc -shared -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -fpic -L/usr/local/lib64 -o fio.so entrypoint.o -L./rust/target/release -lfio
====================CLEANING VENDOR AND TARGET DIR====================
rm -Rf /data/gannet/ripley/R/packages/tests-devel/fio/src/.cargo /data/gannet/ripley/R/packages/tests-devel/fio/src/vendor ./rust/target
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/fio/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/fio/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/fio/src'
installing to /data/gannet/ripley/R/packages/tests-devel/fio.Rcheck/00LOCK-fio/00new/fio/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (fio)