* installing *source* package ‘fcci’ ...
** package ‘fcci’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (GCC) 13.2.0’
using C++11
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/fcci/src'
g++-13 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c binom.cpp -o binom.o
In file included from binom.cpp:2:
DiscreteFeldmanCousins.h: In member function 'Rcpp::NumericVector DiscreteFeldmanCousins::confint()':
DiscreteFeldmanCousins.h:38:40: warning: unused variable 'R_l' [-Wunused-variable]
38 | double R_l = lik_ratio(l - 1);
| ^~~
DiscreteFeldmanCousins.h:39:40: warning: unused variable 'R_r' [-Wunused-variable]
39 | double R_r = lik_ratio(r + 1);
| ^~~
In member function 'Rcpp::NumericVector DiscreteFeldmanCousins::confint()',
inlined from 'Rcpp::NumericVector confint_binom_cpp(int, int, double, double, double, double)' at binom.cpp:44:20:
DiscreteFeldmanCousins.h:55:35: warning: 't_up' may be used uninitialized [-Wmaybe-uninitialized]
55 | return {t_lo, t_up};
| ^
DiscreteFeldmanCousins.h: In function 'Rcpp::NumericVector confint_binom_cpp(int, int, double, double, double, double)':
DiscreteFeldmanCousins.h:25:24: note: 't_up' was declared here
25 | double t_up, t_lo;
| ^~~~
In member function 'Rcpp::NumericVector DiscreteFeldmanCousins::confint()',
inlined from 'Rcpp::NumericVector confint_binom_cpp(int, int, double, double, double, double)' at binom.cpp:44:20:
DiscreteFeldmanCousins.h:55:35: warning: 't_lo' may be used uninitialized [-Wmaybe-uninitialized]
55 | return {t_lo, t_up};
| ^
DiscreteFeldmanCousins.h: In function 'Rcpp::NumericVector confint_binom_cpp(int, int, double, double, double, double)':
DiscreteFeldmanCousins.h:25:30: note: 't_lo' was declared here
25 | double t_up, t_lo;
| ^~~~
g++-13 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c pois.cpp -o pois.o
In file included from pois.cpp:3:
DiscreteFeldmanCousins.h: In member function 'Rcpp::NumericVector DiscreteFeldmanCousins::confint()':
DiscreteFeldmanCousins.h:38:40: warning: unused variable 'R_l' [-Wunused-variable]
38 | double R_l = lik_ratio(l - 1);
| ^~~
DiscreteFeldmanCousins.h:39:40: warning: unused variable 'R_r' [-Wunused-variable]
39 | double R_r = lik_ratio(r + 1);
| ^~~
In member function 'Rcpp::NumericVector DiscreteFeldmanCousins::confint()',
inlined from 'Rcpp::NumericVector confint_pois_adj_cpp(int, double, double, double, double, double, double, double)' at pois.cpp:90:39:
DiscreteFeldmanCousins.h:55:35: warning: 't_up' may be used uninitialized [-Wmaybe-uninitialized]
55 | return {t_lo, t_up};
| ^
DiscreteFeldmanCousins.h: In function 'Rcpp::NumericVector confint_pois_adj_cpp(int, double, double, double, double, double, double, double)':
DiscreteFeldmanCousins.h:25:24: note: 't_up' was declared here
25 | double t_up, t_lo;
| ^~~~
In member function 'Rcpp::NumericVector DiscreteFeldmanCousins::confint()',
inlined from 'Rcpp::NumericVector confint_pois_adj_cpp(int, double, double, double, double, double, double, double)' at pois.cpp:90:39:
DiscreteFeldmanCousins.h:55:35: warning: 't_lo' may be used uninitialized [-Wmaybe-uninitialized]
55 | return {t_lo, t_up};
| ^
DiscreteFeldmanCousins.h: In function 'Rcpp::NumericVector confint_pois_adj_cpp(int, double, double, double, double, double, double, double)':
DiscreteFeldmanCousins.h:25:30: note: 't_lo' was declared here
25 | double t_up, t_lo;
| ^~~~
DiscreteFeldmanCousins.h:25:24: warning: 't_up' may be used uninitialized [-Wmaybe-uninitialized]
25 | double t_up, t_lo;
| ^~~~
DiscreteFeldmanCousins.h:25:30: warning: 't_lo' may be used uninitialized [-Wmaybe-uninitialized]
25 | double t_up, t_lo;
| ^~~~
In member function 'Rcpp::NumericVector DiscreteFeldmanCousins::confint()',
inlined from 'Rcpp::NumericVector confint_pois_cpp(int, double, double, double, double, double)' at pois.cpp:63:20:
DiscreteFeldmanCousins.h:55:35: warning: 't_up' may be used uninitialized [-Wmaybe-uninitialized]
55 | return {t_lo, t_up};
| ^
DiscreteFeldmanCousins.h: In function 'Rcpp::NumericVector confint_pois_cpp(int, double, double, double, double, double)':
DiscreteFeldmanCousins.h:25:24: note: 't_up' was declared here
25 | double t_up, t_lo;
| ^~~~
In member function 'Rcpp::NumericVector DiscreteFeldmanCousins::confint()',
inlined from 'Rcpp::NumericVector confint_pois_cpp(int, double, double, double, double, double)' at pois.cpp:63:20:
DiscreteFeldmanCousins.h:55:35: warning: 't_lo' may be used uninitialized [-Wmaybe-uninitialized]
55 | return {t_lo, t_up};
| ^
DiscreteFeldmanCousins.h: In function 'Rcpp::NumericVector confint_pois_cpp(int, double, double, double, double, double)':
DiscreteFeldmanCousins.h:25:30: note: 't_lo' was declared here
25 | double t_up, t_lo;
| ^~~~
g++-13 -std=gnu++11 -shared -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o fcci.so RcppExports.o binom.o pois.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/fcci/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/fcci/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/fcci/src'
installing to /data/gannet/ripley/R/packages/tests-devel/fcci.Rcheck/00LOCK-fcci/00new/fcci/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (fcci)