* installing *source* package ‘fcaR’ ... ** package ‘fcaR’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (GCC) 14.2.0’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/fcaR/src' g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c Logics.cpp -o Logics.o g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c aux_functions.cpp -o aux_functions.o g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c implication_tree.cpp -o implication_tree.o g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c nextclosure.cpp -o nextclosure.o g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c set_operations_galois.cpp -o set_operations_galois.o nextclosure.cpp: In function 'Rcpp::List next_closure_implications(Rcpp::NumericMatrix, Rcpp::List, Rcpp::StringVector, Rcpp::String, Rcpp::String, bool, bool)': nextclosure.cpp:480:10: warning: unused variable 'pctg' [-Wunused-variable] 480 | double pctg, old_pctg = 0; | ^~~~ nextclosure.cpp:480:16: warning: unused variable 'old_pctg' [-Wunused-variable] 480 | double pctg, old_pctg = 0; | ^~~~~~~~ set_operations_galois.cpp: In function 'void compute_intent(SparseVector*, SparseVector, double*, int, int, LogicOperator, LogicOperator)': set_operations_galois.cpp:22:26: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 22 | for (size_t r = 0; r < n_objects; r++) { | ~~^~~~~~~~~~~ set_operations_galois.cpp:26:13: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 26 | if (i < V.i.used) { | ~~^~~~~~~~~~ set_operations_galois.cpp:28:26: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 28 | if (V.i.array[i] == r) { | ~~~~~~~~~~~~~^~~~ set_operations_galois.cpp: In function 'void compute_extent(SparseVector*, SparseVector, double*, int, int, LogicOperator, LogicOperator)': set_operations_galois.cpp:98:26: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 98 | for (size_t c = 0; c < n_attributes; c++) { | ~~^~~~~~~~~~~~~~ set_operations_galois.cpp:102:13: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 102 | if (i < V.i.used) { | ~~^~~~~~~~~~ set_operations_galois.cpp:104:26: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 104 | if (V.i.array[i] == c) { | ~~~~~~~~~~~~~^~~~ set_operations_galois.cpp: In function 'void compute_upright_arrow(SparseVector*, SparseVector, double*, int, int, LogicOperator, LogicOperator)': set_operations_galois.cpp:173:26: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 173 | for (size_t r = 0; r < n_objects; r++) { | ~~^~~~~~~~~~~ set_operations_galois.cpp:177:13: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 177 | if (i < V.i.used) { | ~~^~~~~~~~~~ set_operations_galois.cpp:179:26: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 179 | if (V.i.array[i] == r) { | ~~~~~~~~~~~~~^~~~ set_operations_galois.cpp: In function 'void compute_downleft_arrow(SparseVector*, SparseVector, double*, int, int, LogicOperator, LogicOperator)': set_operations_galois.cpp:248:26: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 248 | for (size_t c = 0; c < n_attributes; c++) { | ~~^~~~~~~~~~~~~~ set_operations_galois.cpp:252:13: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 252 | if (i < V.i.used) { | ~~^~~~~~~~~~ set_operations_galois.cpp:254:26: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 254 | if (V.i.array[i] == c) { | ~~~~~~~~~~~~~^~~~ set_operations_galois.cpp: In function 'void compute_upleft_arrow(SparseVector*, SparseVector, double*, int, int, LogicOperator, LogicOperator)': set_operations_galois.cpp:327:26: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 327 | for (size_t r = 0; r < n_objects; r++) { | ~~^~~~~~~~~~~ set_operations_galois.cpp:331:13: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 331 | if (i < V.i.used) { | ~~^~~~~~~~~~ set_operations_galois.cpp:333:26: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 333 | if (V.i.array[i] == r) { | ~~~~~~~~~~~~~^~~~ set_operations_galois.cpp: In function 'void compute_downright_arrow(SparseVector*, SparseVector, double*, int, int, LogicOperator, LogicOperator)': set_operations_galois.cpp:408:26: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 408 | for (size_t c = 0; c < n_attributes; c++) { | ~~^~~~~~~~~~~~~~ set_operations_galois.cpp:412:13: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 412 | if (i < V.i.used) { | ~~^~~~~~~~~~ set_operations_galois.cpp:414:26: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 414 | if (V.i.array[i] == c) { | ~~~~~~~~~~~~~^~~~ set_operations_galois.cpp: In function 'void is_subset(SparseVector, ImplicationTree, IntArray*, bool*)': set_operations_galois.cpp:602:23: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long unsigned int'} [-Wsign-compare] 602 | for (int i = 0; i < t.COUNT.used; i++) { | ~~^~~~~~~~~~~~~~ g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c subsetting.cpp -o subsetting.o g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c vector_operations.cpp -o vector_operations.o vector_operations.cpp: In function 'void printArray(IntArray)': vector_operations.cpp:63:23: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 63 | for (int i = 0; i < a.used; i++) { | ~~^~~~~~~~ vector_operations.cpp: In function 'void printArray(DoubleArray)': vector_operations.cpp:142:23: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 142 | for (int i = 0; i < a.used; i++) { | ~~^~~~~~~~ vector_operations.cpp: In function 'SparseVector set_difference_sparse(Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::NumericVector, Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::NumericVector, int)': vector_operations.cpp:479:24: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'R_xlen_t' {aka 'long int'} [-Wsign-compare] 479 | for (size_t p = 0; p < xp.size() - 1; p++) { | ~~^~~~~~~~~~~~~~~ vector_operations.cpp:486:31: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 486 | for (size_t i = init_x; i < end_x; i++) { | ~~^~~~~~~ vector_operations.cpp:507:33: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 507 | for (size_t j = init_y; j < end_y; j++) { | ~~^~~~~~~ vector_operations.cpp: In function 'SparseVector set_difference_sparse1(Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::NumericVector, Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::NumericVector, int)': vector_operations.cpp:585:24: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'R_xlen_t' {aka 'long int'} [-Wsign-compare] 585 | for (size_t p = 0; p < xp.size() - 1; p++) { | ~~^~~~~~~~~~~~~~~ vector_operations.cpp:592:31: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 592 | for (size_t i = init_x; i < end_x; i++) { | ~~^~~~~~~ vector_operations.cpp:613:33: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 613 | for (size_t j = init_y; j < end_y; j++) { | ~~^~~~~~~ vector_operations.cpp: In function 'SparseVector set_intersection_sparse1(Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::NumericVector, Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::NumericVector, int)': vector_operations.cpp:690:24: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'R_xlen_t' {aka 'long int'} [-Wsign-compare] 690 | for (size_t p = 0; p < xp.size() - 1; p++) { | ~~^~~~~~~~~~~~~~~ vector_operations.cpp:697:31: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 697 | for (size_t i = init_x; i < end_x; i++) { | ~~^~~~~~~ vector_operations.cpp:701:33: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 701 | for (size_t j = init_y; j < end_y; j++) { | ~~^~~~~~~ vector_operations.cpp:699:12: warning: unused variable 'add' [-Wunused-variable] 699 | bool add = false; | ^~~ vector_operations.cpp: In function 'Rcpp::NumericVector as_vector(SparseVector)': vector_operations.cpp:759:21: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 759 | for (int i = 0; i < v.i.used; i++) { | ~~^~~~~~~~~~ vector_operations.cpp: In function 'double get_element(SparseVector, int)': vector_operations.cpp:855:9: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 855 | if (n > v.length - 1) { | ~~^~~~~~~~~~~~~~ vector_operations.cpp:863:21: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 863 | for (int i = 0; i < v.i.used; i++) { | ~~^~~~~~~~~~ g++-14 -std=gnu++17 -shared -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o fcaR.so Logics.o RcppExports.o aux_functions.o implication_tree.o nextclosure.o set_operations_galois.o subsetting.o vector_operations.o make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/fcaR/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/fcaR/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/fcaR/src' installing to /data/gannet/ripley/R/packages/tests-devel/fcaR.Rcheck/00LOCK-fcaR/00new/fcaR/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fcaR)