* installing *source* package ‘fcaR’ ...
** package ‘fcaR’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (GCC) 13.2.0’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/fcaR/src'
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c Logics.cpp -o Logics.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c aux_functions.cpp -o aux_functions.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c implication_tree.cpp -o implication_tree.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c nextclosure.cpp -o nextclosure.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c set_operations_galois.cpp -o set_operations_galois.o
nextclosure.cpp: In function 'Rcpp::List next_closure_implications(Rcpp::NumericMatrix, Rcpp::List, Rcpp::StringVector, Rcpp::String, Rcpp::String, bool, bool)':
nextclosure.cpp:480:10: warning: unused variable 'pctg' [-Wunused-variable]
480 | double pctg, old_pctg = 0;
| ^~~~
nextclosure.cpp:480:16: warning: unused variable 'old_pctg' [-Wunused-variable]
480 | double pctg, old_pctg = 0;
| ^~~~~~~~
set_operations_galois.cpp: In function 'void compute_intent(SparseVector*, SparseVector, double*, int, int, LogicOperator, LogicOperator)':
set_operations_galois.cpp:22:26: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
22 | for (size_t r = 0; r < n_objects; r++) {
| ~~^~~~~~~~~~~
set_operations_galois.cpp:26:13: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
26 | if (i < V.i.used) {
| ~~^~~~~~~~~~
set_operations_galois.cpp:28:26: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
28 | if (V.i.array[i] == r) {
| ~~~~~~~~~~~~~^~~~
set_operations_galois.cpp: In function 'void compute_extent(SparseVector*, SparseVector, double*, int, int, LogicOperator, LogicOperator)':
set_operations_galois.cpp:98:26: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
98 | for (size_t c = 0; c < n_attributes; c++) {
| ~~^~~~~~~~~~~~~~
set_operations_galois.cpp:102:13: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
102 | if (i < V.i.used) {
| ~~^~~~~~~~~~
set_operations_galois.cpp:104:26: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
104 | if (V.i.array[i] == c) {
| ~~~~~~~~~~~~~^~~~
set_operations_galois.cpp: In function 'void compute_upright_arrow(SparseVector*, SparseVector, double*, int, int, LogicOperator, LogicOperator)':
set_operations_galois.cpp:173:26: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
173 | for (size_t r = 0; r < n_objects; r++) {
| ~~^~~~~~~~~~~
set_operations_galois.cpp:177:13: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
177 | if (i < V.i.used) {
| ~~^~~~~~~~~~
set_operations_galois.cpp:179:26: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
179 | if (V.i.array[i] == r) {
| ~~~~~~~~~~~~~^~~~
set_operations_galois.cpp: In function 'void compute_downleft_arrow(SparseVector*, SparseVector, double*, int, int, LogicOperator, LogicOperator)':
set_operations_galois.cpp:248:26: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
248 | for (size_t c = 0; c < n_attributes; c++) {
| ~~^~~~~~~~~~~~~~
set_operations_galois.cpp:252:13: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
252 | if (i < V.i.used) {
| ~~^~~~~~~~~~
set_operations_galois.cpp:254:26: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
254 | if (V.i.array[i] == c) {
| ~~~~~~~~~~~~~^~~~
set_operations_galois.cpp: In function 'void compute_upleft_arrow(SparseVector*, SparseVector, double*, int, int, LogicOperator, LogicOperator)':
set_operations_galois.cpp:327:26: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
327 | for (size_t r = 0; r < n_objects; r++) {
| ~~^~~~~~~~~~~
set_operations_galois.cpp:331:13: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
331 | if (i < V.i.used) {
| ~~^~~~~~~~~~
set_operations_galois.cpp:333:26: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
333 | if (V.i.array[i] == r) {
| ~~~~~~~~~~~~~^~~~
set_operations_galois.cpp: In function 'void compute_downright_arrow(SparseVector*, SparseVector, double*, int, int, LogicOperator, LogicOperator)':
set_operations_galois.cpp:408:26: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
408 | for (size_t c = 0; c < n_attributes; c++) {
| ~~^~~~~~~~~~~~~~
set_operations_galois.cpp:412:13: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
412 | if (i < V.i.used) {
| ~~^~~~~~~~~~
set_operations_galois.cpp:414:26: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
414 | if (V.i.array[i] == c) {
| ~~~~~~~~~~~~~^~~~
set_operations_galois.cpp: In function 'void is_subset(SparseVector, ImplicationTree, IntArray*, bool*)':
set_operations_galois.cpp:602:23: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long unsigned int'} [-Wsign-compare]
602 | for (int i = 0; i < t.COUNT.used; i++) {
| ~~^~~~~~~~~~~~~~
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c subsetting.cpp -o subsetting.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c vector_operations.cpp -o vector_operations.o
vector_operations.cpp: In function 'void printArray(IntArray)':
vector_operations.cpp:63:23: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
63 | for (int i = 0; i < a.used; i++) {
| ~~^~~~~~~~
vector_operations.cpp: In function 'void printArray(DoubleArray)':
vector_operations.cpp:142:23: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
142 | for (int i = 0; i < a.used; i++) {
| ~~^~~~~~~~
vector_operations.cpp: In function 'SparseVector set_difference_sparse(Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::NumericVector, Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::NumericVector, int)':
vector_operations.cpp:479:24: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'R_xlen_t' {aka 'long int'} [-Wsign-compare]
479 | for (size_t p = 0; p < xp.size() - 1; p++) {
| ~~^~~~~~~~~~~~~~~
vector_operations.cpp:486:31: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
486 | for (size_t i = init_x; i < end_x; i++) {
| ~~^~~~~~~
vector_operations.cpp:507:33: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
507 | for (size_t j = init_y; j < end_y; j++) {
| ~~^~~~~~~
vector_operations.cpp: In function 'SparseVector set_difference_sparse1(Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::NumericVector, Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::NumericVector, int)':
vector_operations.cpp:585:24: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'R_xlen_t' {aka 'long int'} [-Wsign-compare]
585 | for (size_t p = 0; p < xp.size() - 1; p++) {
| ~~^~~~~~~~~~~~~~~
vector_operations.cpp:592:31: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
592 | for (size_t i = init_x; i < end_x; i++) {
| ~~^~~~~~~
vector_operations.cpp:613:33: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
613 | for (size_t j = init_y; j < end_y; j++) {
| ~~^~~~~~~
vector_operations.cpp: In function 'SparseVector set_intersection_sparse1(Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::NumericVector, Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::NumericVector, int)':
vector_operations.cpp:690:24: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'R_xlen_t' {aka 'long int'} [-Wsign-compare]
690 | for (size_t p = 0; p < xp.size() - 1; p++) {
| ~~^~~~~~~~~~~~~~~
vector_operations.cpp:697:31: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
697 | for (size_t i = init_x; i < end_x; i++) {
| ~~^~~~~~~
vector_operations.cpp:701:33: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
701 | for (size_t j = init_y; j < end_y; j++) {
| ~~^~~~~~~
vector_operations.cpp:699:12: warning: unused variable 'add' [-Wunused-variable]
699 | bool add = false;
| ^~~
vector_operations.cpp: In function 'Rcpp::NumericVector as_vector(SparseVector)':
vector_operations.cpp:759:21: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
759 | for (int i = 0; i < v.i.used; i++) {
| ~~^~~~~~~~~~
vector_operations.cpp: In function 'double get_element(SparseVector, int)':
vector_operations.cpp:855:9: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
855 | if (n > v.length - 1) {
| ~~^~~~~~~~~~~~~~
vector_operations.cpp:863:21: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
863 | for (int i = 0; i < v.i.used; i++) {
| ~~^~~~~~~~~~
g++-13 -std=gnu++17 -shared -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o fcaR.so Logics.o RcppExports.o aux_functions.o implication_tree.o nextclosure.o set_operations_galois.o subsetting.o vector_operations.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/fcaR/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/fcaR/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/fcaR/src'
installing to /data/gannet/ripley/R/packages/tests-devel/fcaR.Rcheck/00LOCK-fcaR/00new/fcaR/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (fcaR)