* installing *source* package ‘epiworldR’ ... ** this is package ‘epiworldR’ version ‘0.14.0.0’ ** package ‘epiworldR’ successfully unpacked and MD5 sums checked ** using staged installation ** libs specified C++17 using C++ compiler: ‘g++ (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7)’ using C++17 make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/epiworldR/src' g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fopenmp -I../inst/include/ -Dprintf_epiworld=Rprintf -Depiworld_double=double '-DEPI_CHECK_USER_INTERRUPT(a)=cpp11::check_user_interrupt()' -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c agents.cpp -o agents.o g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fopenmp -I../inst/include/ -Dprintf_epiworld=Rprintf -Depiworld_double=double '-DEPI_CHECK_USER_INTERRUPT(a)=cpp11::check_user_interrupt()' -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c cpp11.cpp -o cpp11.o g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fopenmp -I../inst/include/ -Dprintf_epiworld=Rprintf -Depiworld_double=double '-DEPI_CHECK_USER_INTERRUPT(a)=cpp11::check_user_interrupt()' -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c db.cpp -o db.o g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fopenmp -I../inst/include/ -Dprintf_epiworld=Rprintf -Depiworld_double=double '-DEPI_CHECK_USER_INTERRUPT(a)=cpp11::check_user_interrupt()' -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c entities.cpp -o entities.o g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fopenmp -I../inst/include/ -Dprintf_epiworld=Rprintf -Depiworld_double=double '-DEPI_CHECK_USER_INTERRUPT(a)=cpp11::check_user_interrupt()' -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c epimodels.cpp -o epimodels.o g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fopenmp -I../inst/include/ -Dprintf_epiworld=Rprintf -Depiworld_double=double '-DEPI_CHECK_USER_INTERRUPT(a)=cpp11::check_user_interrupt()' -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c events.cpp -o events.o g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fopenmp -I../inst/include/ -Dprintf_epiworld=Rprintf -Depiworld_double=double '-DEPI_CHECK_USER_INTERRUPT(a)=cpp11::check_user_interrupt()' -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c lfmcmc.cpp -o lfmcmc.o g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fopenmp -I../inst/include/ -Dprintf_epiworld=Rprintf -Depiworld_double=double '-DEPI_CHECK_USER_INTERRUPT(a)=cpp11::check_user_interrupt()' -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c model-diagram.cpp -o model-diagram.o g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fopenmp -I../inst/include/ -Dprintf_epiworld=Rprintf -Depiworld_double=double '-DEPI_CHECK_USER_INTERRUPT(a)=cpp11::check_user_interrupt()' -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c model.cpp -o model.o g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fopenmp -I../inst/include/ -Dprintf_epiworld=Rprintf -Depiworld_double=double '-DEPI_CHECK_USER_INTERRUPT(a)=cpp11::check_user_interrupt()' -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c tool.cpp -o tool.o g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fopenmp -I../inst/include/ -Dprintf_epiworld=Rprintf -Depiworld_double=double '-DEPI_CHECK_USER_INTERRUPT(a)=cpp11::check_user_interrupt()' -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c virus.cpp -o virus.o g++ -std=gnu++17 -shared -L/usr/local/lib64 -o epiworldR.so agents.o cpp11.o db.o entities.o epimodels.o events.o lfmcmc.o model-diagram.o model.o tool.o virus.o -fopenmp make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/epiworldR/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/epiworldR/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/epiworldR/src' installing to /data/gannet/ripley/R/packages/tests-devel/epiworldR.Rcheck/00LOCK-epiworldR/00new/epiworldR/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (epiworldR)