* installing *source* package ‘emdist’ ...
** this is package ‘emdist’ version ‘0.3-3’
** package ‘emdist’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/emdist/src'
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c dummy.c -o dummy.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c emd-r.c -o emd-r.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c emd-rubner.c -o emd-rubner.o
In function ‘addBasicVariable’,
inlined from ‘russel’ at emd-rubner.c:903:7,
inlined from ‘init’ at emd-rubner.c:451:3,
inlined from ‘emd_rubner’ at emd-rubner.c:205:7:
emd-rubner.c:975:13: warning: ‘minI’ may be used uninitialized [-Wmaybe-uninitialized]
975 | if (fabs(S[minI]-D[minJ]) <= EPSILON * _maxW) /* DEGENERATE CASE */
| ^
emd-rubner.c: In function ‘emd_rubner’:
emd-rubner.c:810:20: note: ‘minI’ was declared here
810 | int i, j, found, minI, minJ;
| ^~~~
In function ‘addBasicVariable’,
inlined from ‘russel’ at emd-rubner.c:903:7,
inlined from ‘init’ at emd-rubner.c:451:3,
inlined from ‘emd_rubner’ at emd-rubner.c:205:7:
emd-rubner.c:975:21: warning: ‘minJ’ may be used uninitialized [-Wmaybe-uninitialized]
975 | if (fabs(S[minI]-D[minJ]) <= EPSILON * _maxW) /* DEGENERATE CASE */
| ^
emd-rubner.c: In function ‘emd_rubner’:
emd-rubner.c:810:26: note: ‘minJ’ was declared here
810 | int i, j, found, minI, minJ;
| ^~~~
In function ‘addBasicVariable’,
inlined from ‘russel’ at emd-rubner.c:903:7,
inlined from ‘init’ at emd-rubner.c:451:3,
inlined from ‘emd_rubner’ at emd-rubner.c:205:7:
emd-rubner.c:1010:21: warning: ‘PrevVMinJ’ may be used uninitialized [-Wmaybe-uninitialized]
1010 | PrevVMinJ->Next = PrevVMinJ->Next->Next; /* REMOVE COLUMN FROM LIST */
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
emd-rubner.c: In function ‘emd_rubner’:
emd-rubner.c:814:36: note: ‘PrevVMinJ’ was declared here
814 | node1_t *PrevUMinI = PrevUMinI, *PrevVMinJ, *Remember;
| ^~~~~~~~~
emd-rubner.c:602:13: warning: ‘minI’ may be used uninitialized [-Wmaybe-uninitialized]
602 | int i, j, minI, minJ;
| ^~~~
emd-rubner.c:602:19: warning: ‘minJ’ may be used uninitialized [-Wmaybe-uninitialized]
602 | int i, j, minI, minJ;
| ^~~~
In function ‘newSol’,
inlined from ‘emd_rubner’ at emd-rubner.c:224:4:
emd-rubner.c:690:8: warning: ‘LeaveX’ may be used uninitialized [-Wmaybe-uninitialized]
690 | if (_RowsX[i] == LeaveX)
| ^
emd-rubner.c: In function ‘emd_rubner’:
emd-rubner.c:645:21: note: ‘LeaveX’ was declared here
645 | node2_t *CurX, *LeaveX;
| ^~~~~~
emd-rubner.c:257:16: warning: ‘FlowP’ may be used uninitialized [-Wmaybe-uninitialized]
257 | FlowP++;
| ~~~~~^~
emd-rubner.c:197:11: note: ‘FlowP’ was declared here
197 | flow_t *FlowP;
| ^~~~~
gcc -shared -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -fpic -L/usr/local/lib64 -o emdist.so dummy.o emd-r.o emd-rubner.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/emdist/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/emdist/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/emdist/src'
installing to /data/gannet/ripley/R/packages/tests-devel/emdist.Rcheck/00LOCK-emdist/00new/emdist/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (emdist)