* installing *source* package ‘eimpute’ ...
** this is package ‘eimpute’ version ‘0.2.4’
** package ‘eimpute’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++ (GCC) 16.1.1 20260515 (Red Hat 16.1.1-2)’
make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-devel/eimpute/src'
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -DUSE_FC_LEN_T -I../inst/include -I'/data/localhost/ripley/R/test-dev/Rcpp/include' -I'/data/localhost/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -DUSE_FC_LEN_T -I../inst/include -I'/data/localhost/ripley/R/test-dev/Rcpp/include' -I'/data/localhost/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c biscale.cpp -o biscale.o
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -DUSE_FC_LEN_T -I../inst/include -I'/data/localhost/ripley/R/test-dev/Rcpp/include' -I'/data/localhost/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c matops.cpp -o matops.o
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -DUSE_FC_LEN_T -I../inst/include -I'/data/localhost/ripley/R/test-dev/Rcpp/include' -I'/data/localhost/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c matrixfit.cpp -o matrixfit.o
In file included from /data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/SparseLU:35,
from /data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/Sparse:29,
from /data/localhost/ripley/R/test-dev/RcppEigen/include/RcppEigenForward.h:29,
from /data/localhost/ripley/R/test-dev/RcppEigen/include/RcppEigen.h:25,
from matops.cpp:1:
/data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h: In instantiation of ‘void Eigen::internal::SparseLUImpl<Scalar, StorageIndex>::heap_relax_snode(Eigen::Index, IndexVector&, Eigen::Index, IndexVector&, IndexVector&) [with Scalar = std::complex<double>; StorageIndex = int; Eigen::Index = long int; IndexVector = Eigen::Matrix<int, -1, 1>]’:
/data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseLU/SparseLU.h:669:27: required from ‘void Eigen::SparseLU<_MatrixType, _OrderingType>::factorize(const MatrixType&) [with _MatrixType = Eigen::SparseMatrix<std::complex<double>, 0>; _OrderingType = Eigen::COLAMDOrdering<int>; MatrixType = Eigen::SparseMatrix<std::complex<double>, 0>]’
669 | Base::heap_relax_snode(n, m_etree, m_perfv.relax, marker, relax_end);
| ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseLU/SparseLU.h:187:7: required from ‘void Eigen::SparseLU<_MatrixType, _OrderingType>::compute(const MatrixType&) [with _MatrixType = Eigen::SparseMatrix<std::complex<double>, 0>; _OrderingType = Eigen::COLAMDOrdering<int>; MatrixType = Eigen::SparseMatrix<std::complex<double>, 0>]’
187 | factorize(matrix);
| ^~~~~~~~~
../inst/include/RMatOp/ComplexShift_sparseMatrix.h:45:16: required from ‘void ComplexShift_sparseMatrix<Storage>::set_shift(double, double) [with int Storage = 1]’
45 | solver.compute(cmat - Complex(sigmar, sigmai) * I);
| ~~~~~~~^~~~~~~
../inst/include/RMatOp/ComplexShift_sparseMatrix.h:36:10: required from here
36 | void set_shift(double sigmar, double sigmai)
| ^~~~~~~~~
/data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable ‘nsuper_et_post’ set but not used [-Wunused-but-set-variable=]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^~~~~~~~~~~~~~
/data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable ‘nsuper_et’ set but not used [-Wunused-but-set-variable=]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^~~~~~~~~
/data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h: In instantiation of ‘void Eigen::internal::SparseLUImpl<Scalar, StorageIndex>::heap_relax_snode(Eigen::Index, IndexVector&, Eigen::Index, IndexVector&, IndexVector&) [with Scalar = double; StorageIndex = int; Eigen::Index = long int; IndexVector = Eigen::Matrix<int, -1, 1>]’:
/data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseLU/SparseLU.h:669:27: required from ‘void Eigen::SparseLU<_MatrixType, _OrderingType>::factorize(const MatrixType&) [with _MatrixType = Eigen::SparseMatrix<double, 0, int>; _OrderingType = Eigen::COLAMDOrdering<int>; MatrixType = Eigen::SparseMatrix<double, 0, int>]’
669 | Base::heap_relax_snode(n, m_etree, m_perfv.relax, marker, relax_end);
| ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseLU/SparseLU.h:187:7: required from ‘void Eigen::SparseLU<_MatrixType, _OrderingType>::compute(const MatrixType&) [with _MatrixType = Eigen::SparseMatrix<double, 0, int>; _OrderingType = Eigen::COLAMDOrdering<int>; MatrixType = Eigen::SparseMatrix<double, 0, int>]’
187 | factorize(matrix);
| ^~~~~~~~~
../inst/include/RMatOp/RealShift_sparseMatrix.h:37:16: required from ‘void RealShift_sparseMatrix<Storage>::set_shift(double) [with int Storage = 1]’
37 | solver.compute(mat - sigma * I);
| ~~~~~~~^~~~~~~
../inst/include/RMatOp/RealShift_sparseMatrix.h:31:10: required from here
31 | void set_shift(double sigma)
| ^~~~~~~~~
/data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable ‘nsuper_et_post’ set but not used [-Wunused-but-set-variable=]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^~~~~~~~~~~~~~
/data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable ‘nsuper_et’ set but not used [-Wunused-but-set-variable=]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^~~~~~~~~
In file included from /data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/Core:341,
from /data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/Dense:1,
from /data/localhost/ripley/R/test-dev/RcppEigen/include/RcppEigenForward.h:28,
from /data/localhost/ripley/R/test-dev/RcppEigen/include/RcppEigen.h:25,
from matrixfit.cpp:12:
/data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h: In function ‘static void Eigen::internal::trmv_selector<Mode, 1>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >; int Mode = 6]’:
/data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: ‘result’ may be used uninitialized [-Wmaybe-uninitialized]
327 | internal::triangular_matrix_vector_product
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
328 | <Index,Mode,
| ~~~~~~~~~~~~
329 | LhsScalar, LhsBlasTraits::NeedToConjugate,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
330 | RhsScalar, RhsBlasTraits::NeedToConjugate,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
331 | RowMajor>
| ~~~~~~~~~
332 | ::run(actualLhs.rows(),actualLhs.cols(),
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
333 | actualLhs.data(),actualLhs.outerStride(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
334 | actualRhsPtr,1,
| ~~~~~~~~~~~~~~~
335 | dest.data(),dest.innerStride(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
336 | actualAlpha);
| ~~~~~~~~~~~~
/data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type ‘const double*’ to ‘static void Eigen::internal::triangular_matrix_vector_product<Index, Mode, LhsScalar, ConjLhs, RhsScalar, ConjRhs, 1, Version>::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = double; bool ConjLhs = false; RhsScalar = double; bool ConjRhs = false; int Version = 0]’ declared here
105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product<Index,Mode,LhsScalar,ConjLhs,RhsScalar,ConjRhs,RowMajor,Version>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h: In function ‘static void Eigen::internal::trmv_selector<Mode, 1>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Ref<Eigen::Matrix<double, -1, -1>, 0, Eigen::OuterStride<> >, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Ref<Eigen::Matrix<double, -1, -1>, 0, Eigen::OuterStride<> >, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >; int Mode = 6]’:
/data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: ‘result’ may be used uninitialized [-Wmaybe-uninitialized]
327 | internal::triangular_matrix_vector_product
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
328 | <Index,Mode,
| ~~~~~~~~~~~~
329 | LhsScalar, LhsBlasTraits::NeedToConjugate,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
330 | RhsScalar, RhsBlasTraits::NeedToConjugate,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
331 | RowMajor>
| ~~~~~~~~~
332 | ::run(actualLhs.rows(),actualLhs.cols(),
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
333 | actualLhs.data(),actualLhs.outerStride(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
334 | actualRhsPtr,1,
| ~~~~~~~~~~~~~~~
335 | dest.data(),dest.innerStride(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
336 | actualAlpha);
| ~~~~~~~~~~~~
/data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type ‘const double*’ to ‘static void Eigen::internal::triangular_matrix_vector_product<Index, Mode, LhsScalar, ConjLhs, RhsScalar, ConjRhs, 1, Version>::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = double; bool ConjLhs = false; RhsScalar = double; bool ConjRhs = false; int Version = 0]’ declared here
105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product<Index,Mode,LhsScalar,ConjLhs,RhsScalar,ConjRhs,RowMajor,Version>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -std=gnu++20 -shared -L/usr/local/lib64 -o eimpute.so RcppExports.o biscale.o matops.o matrixfit.o -llapack -L/data/localhost/ripley/R/R-devel/lib -lRblas -lgfortran -lm -latomic_asneeded -lquadmath
make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-devel/eimpute/src'
make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-devel/eimpute/src'
make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-devel/eimpute/src'
installing to /data/localhost/ripley/R/packages/tests-devel/eimpute.Rcheck/00LOCK-eimpute/00new/eimpute/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (eimpute)