• using R Under development (unstable) (2026-07-23 r90295)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc (GCC) 16.1.1 20260515 (Red Hat 16.1.1-2)     GNU Fortran (GCC) 16.1.1 20260515 (Red Hat 16.1.1-2)
• running under: Fedora Linux 44 (Server Edition)
• using session charset: UTF-8 * current time: 2026-07-23 20:35:25 UTC
• using option ‘--no-stop-on-test-error’
• checking for file ‘eigencore/DESCRIPTION’ ... OK
• this is package ‘eigencore’ version ‘1.0.0’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘eigencore’ can be installed ... [35s/37s] OK See the install log for details.
• used C++ compiler: ‘g++ (GCC) 16.1.1 20260515 (Red Hat 16.1.1-2)’
• checking C++ specification ... INFO   specified C++17
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [27s/27s] OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking use of PKG_*FLAGS in Makefiles ... OK
• checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [30s/31s] ERROR   Running ‘testthat.R’ [29s/30s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > library(testthat)   > library(eigencore)   >   > test_check("eigencore")   Saving _problems/test-bench-smoke-41.R   Saving _problems/test-bench-smoke-187.R   Saving _problems/test-bench-smoke-231.R   Saving _problems/test-bench-smoke-272.R   Saving _problems/test-bench-smoke-1038.R   Saving _problems/test-bench-smoke-1190.R   Saving _problems/test-bench-smoke-1235.R   Saving _problems/test-bench-smoke-1338.R   Saving _problems/test-bench-smoke-1373.R   Saving _problems/test-bench-smoke-1411.R   Saving _problems/test-bench-smoke-1535.R   Saving _problems/test-bench-smoke-1691.R   Saving _problems/test-bench-smoke-1768.R   Saving _problems/test-bench-smoke-1769.R   Saving _problems/test-bench-smoke-1770.R   Saving _problems/test-bench-smoke-1861.R   Saving _problems/test-bench-smoke-1862.R   Saving _problems/test-bench-smoke-1863.R   Saving _problems/test-bench-smoke-1959.R   Saving _problems/test-bench-smoke-1960.R   Saving _problems/test-bench-smoke-1961.R   Saving _problems/test-bench-smoke-1962.R   Saving _problems/test-validation-458.R   [ FAIL 23 | WARN 0 | SKIP 19 | PASS 3922 ]      ══ Skipped tests (19) ══════════════════════════════════════════════════════════   • GitHub workflow is source-only and excluded from the built package (1):     'test-bench-smoke.R:594:3'   • On CRAN (8): 'test-api-surface.R:18:1', 'test-api-surface.R:30:1',     'test-api-surface.R:36:1', 'test-property-hermitian.R:2:3',     'test-property-hermitian.R:31:3', 'test-property-svd.R:2:3',     'test-property-svd.R:33:3', 'test-sparse-general-pencil.R:171:3'   • repository docs/generalized-eigen-api.md is excluded from package tarballs     (1): 'test-generalized-api-contract.R:17:3'   • source docs are not available in installed-package checks (8):     'test-bench-smoke.R:748:3', 'test-bench-smoke.R:772:3',     'test-bench-smoke.R:825:3', 'test-bench-smoke.R:845:3',     'test-bench-smoke.R:879:3', 'test-bench-smoke.R:899:3',     'test-bench-smoke.R:914:3', 'test-bench-smoke.R:928:3'   • {PRIMME} is not installed (1): 'test-bench-smoke.R:203:3'      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test-bench-smoke.R:35:3'): benchmark harness produces certificate-inclusive rows ──   Error in `utils::Rprofmem(f, threshold = 1)`: memory profiling is not available on this system   Backtrace:       ▆    1. └─global benchmark_svd_case(...) at test-bench-smoke.R:35:3    2. └─base::lapply(...)    3. └─FUN(X[[i]], ...)    4. └─global time_certified_svd_method(method, A, rank, tol, seed, iterations)    5. └─global run_timed(...)    6. └─bench::mark(...)    7. └─bench (local) eval_one(exprs[[i]], memory)    8. └─utils::Rprofmem(f, threshold = 1)   ── Error ('test-bench-smoke.R:181:3'): Gram SVD cutoff benchmark rows expose 600-side provenance ──   Error in `utils::Rprofmem(f, threshold = 1)`: memory profiling is not available on this system   Backtrace:       ▆    1. └─global benchmark_svd_case(...) at test-bench-smoke.R:181:3    2. └─base::lapply(...)    3. └─FUN(X[[i]], ...)    4. └─global time_certified_svd_method(method, A, rank, tol, seed, iterations)    5. └─global run_timed(...)    6. └─bench::mark(...)    7. └─bench (local) eval_one(exprs[[i]], memory)    8. └─utils::Rprofmem(f, threshold = 1)   ── Error ('test-bench-smoke.R:231:3'): benchmark timing resets seed for each measured iteration ──   Error in `utils::Rprofmem(f, threshold = 1)`: memory profiling is not available on this system   Backtrace:       ▆    1. └─global run_timed(stats::runif(1), iterations = 3, seed = 410) at test-bench-smoke.R:231:3    2. └─bench::mark(...)    3. └─bench (local) eval_one(exprs[[i]], memory)    4. └─utils::Rprofmem(f, threshold = 1)   ── Error ('test-bench-smoke.R:264:3'): generalized LOBPCG benchmark exposes native B-orthogonal diagnostics ──   Error in `utils::Rprofmem(f, threshold = 1)`: memory profiling is not available on this system   Backtrace:       ▆    1. └─global benchmark_generalized_eigen_case(...) at test-bench-smoke.R:264:3    2. └─base::lapply(...)    3. └─FUN(X[[i]], ...)    4. └─global run_timed(...)    5. └─bench::mark(...)    6. └─bench (local) eval_one(exprs[[i]], memory)    7. └─utils::Rprofmem(f, threshold = 1)   ── Error ('test-bench-smoke.R:1032:3'): randomized-rsvd benchmark rows expose native projection diagnostics ──   Error in `utils::Rprofmem(f, threshold = 1)`: memory profiling is not available on this system   Backtrace:       ▆    1. └─global benchmark_randomized_rsvd_case(...) at test-bench-smoke.R:1032:3    2. └─base::lapply(...)    3. └─FUN(X[[i]], ...)    4. └─global time_certified_svd_method(method, A, rank, tol, seed, iterations)    5. └─global run_timed(...)    6. └─bench::mark(...)    7. └─bench (local) eval_one(exprs[[i]], memory)    8. └─utils::Rprofmem(f, threshold = 1)   ── Error ('test-bench-smoke.R:1181:3'): SVD benchmark exposes guarded BPRO diagnostic rows ──   Error in `utils::Rprofmem(f, threshold = 1)`: memory profiling is not available on this system   Backtrace:       ▆    1. └─global benchmark_svd_case(...) at test-bench-smoke.R:1181:3    2. └─base::lapply(...)    3. └─FUN(X[[i]], ...)    4. └─global time_certified_svd_method(method, A, rank, tol, seed, iterations)    5. └─global run_timed(...)    6. └─bench::mark(...)    7. └─bench (local) eval_one(exprs[[i]], memory)    8. └─utils::Rprofmem(f, threshold = 1)   ── Error ('test-bench-smoke.R:1229:3'): SVD benchmark harness exposes Golub-Kahan candidate separately ──   Error in `utils::Rprofmem(f, threshold = 1)`: memory profiling is not available on this system   Backtrace:       ▆    1. └─global benchmark_svd_case(...) at test-bench-smoke.R:1229:3    2. └─base::lapply(...)    3. └─FUN(X[[i]], ...)    4. └─global time_certified_svd_method(method, A, rank, tol, seed, iterations)    5. └─global run_timed(...)    6. └─bench::mark(...)    7. └─bench (local) eval_one(exprs[[i]], memory)    8. └─utils::Rprofmem(f, threshold = 1)   ── Error ('test-bench-smoke.R:1332:3'): SVD benchmark can expose projected Golub-Kahan as a separate row ──   Error in `utils::Rprofmem(f, threshold = 1)`: memory profiling is not available on this system   Backtrace:       ▆    1. └─global benchmark_svd_case(...) at test-bench-smoke.R:1332:3    2. └─base::lapply(...)    3. └─FUN(X[[i]], ...)    4. └─global time_certified_svd_method(method, A, rank, tol, seed, iterations)    5. └─global run_timed(...)    6. └─bench::mark(...)    7. └─bench (local) eval_one(exprs[[i]], memory)    8. └─utils::Rprofmem(f, threshold = 1)   ── Error ('test-bench-smoke.R:1367:3'): SVD benchmark can expose native block Golub-Kahan cycle candidate ──   Error in `utils::Rprofmem(f, threshold = 1)`: memory profiling is not available on this system   Backtrace:       ▆    1. └─global benchmark_svd_case(...) at test-bench-smoke.R:1367:3    2. └─base::lapply(...)    3. └─FUN(X[[i]], ...)    4. └─global time_certified_svd_method(method, A, rank, tol, seed, iterations)    5. └─global run_timed(...)    6. └─bench::mark(...)    7. └─bench (local) eval_one(exprs[[i]], memory)    8. └─utils::Rprofmem(f, threshold = 1)   ── Error ('test-bench-smoke.R:1397:3'): SVD benchmark can expose lean native block Golub-Kahan restart candidate ──   Error in `utils::Rprofmem(f, threshold = 1)`: memory profiling is not available on this system   Backtrace:       ▆    1. └─global benchmark_svd_case(...) at test-bench-smoke.R:1397:3    2. └─base::lapply(...)    3. └─FUN(X[[i]], ...)    4. └─global time_certified_svd_method(method, A, rank, tol, seed, iterations)    5. └─global run_timed(...)    6. └─bench::mark(...)    7. └─bench (local) eval_one(exprs[[i]], memory)    8. └─utils::Rprofmem(f, threshold = 1)   ── Error ('test-bench-smoke.R:1528:3'): SVD benchmark rows audit raw and eigencore-certified reference timing ──   Error in `utils::Rprofmem(f, threshold = 1)`: memory profiling is not available on this system   Backtrace:       ▆    1. └─global benchmark_svd_case(...) at test-bench-smoke.R:1528:3    2. └─base::lapply(...)    3. └─FUN(X[[i]], ...)    4. └─global time_certified_svd_method(method, A, rank, tol, seed, iterations)    5. └─global run_timed(...)    6. └─bench::mark(...)    7. └─bench (local) eval_one(exprs[[i]], memory)    8. └─utils::Rprofmem(f, threshold = 1)   ── Error ('test-bench-smoke.R:1686:3'): tiny Gram eigensolver benchmark compares native backends ──   Error in `utils::Rprofmem(f, threshold = 1)`: memory profiling is not available on this system   Backtrace:       ▆    1. └─global benchmark_tiny_gram_eigensolvers(...) at test-bench-smoke.R:1686:3    2. └─bench::mark(...)    3. └─bench (local) eval_one(exprs[[i]], memory)    4. └─utils::Rprofmem(f, threshold = 1)   ── Failure ('test-bench-smoke.R:1768:3'): G1 candidate baseline covers required pre-promotion cases ──   Expected `any(rows$certificate_type == "method_error")` to be FALSE.   Differences:   `actual`: TRUE   `expected`: FALSE      ── Failure ('test-bench-smoke.R:1769:3'): G1 candidate baseline covers required pre-promotion cases ──   Expected `all(rows$certificate_passed)` to be TRUE.   Differences:   `actual`: FALSE   `expected`: TRUE      ── Failure ('test-bench-smoke.R:1770:3'): G1 candidate baseline covers required pre-promotion cases ──   Expected `all(rows$nconv >= rows$k)` to be TRUE.   Differences:   `actual`: FALSE   `expected`: TRUE      ── Failure ('test-bench-smoke.R:1861:3'): benchmark rows expose typed preconditioner diagnostics ──   Expected `rows$preconditioner_kind` to equal "shifted_tridiagonal".   Differences:   `actual`: NA   `expected`: "shifted_tridiagonal"      ── Failure ('test-bench-smoke.R:1862:3'): benchmark rows expose typed preconditioner diagnostics ──   Expected `rows$preconditioner_native` to be TRUE.   Differences:   `actual`: <NA>   `expected`: TRUE      ── Failure ('test-bench-smoke.R:1863:3'): benchmark rows expose typed preconditioner diagnostics ──   Expected `rows$preconditioner_calls` >= 1L.   Actual comparison: NA < 1   ── Failure ('test-bench-smoke.R:1959:3'): Hermitian benchmark harness can gate the explicit block candidate ──   Expected `block_row$block_size` to equal 2L.   Differences:     `actual`: NA   `expected`: 2      ── Failure ('test-bench-smoke.R:1960:3'): Hermitian benchmark harness can gate the explicit block candidate ──   Expected `block_row$restarts` >= 0L.   Actual comparison: NA < 0   ── Failure ('test-bench-smoke.R:1961:3'): Hermitian benchmark harness can gate the explicit block candidate ──   Expected `is.finite(block_row$stage_reorthogonalization_seconds)` to be TRUE.   Differences:   `actual`: FALSE   `expected`: TRUE      ── Failure ('test-bench-smoke.R:1962:3'): Hermitian benchmark harness can gate the explicit block candidate ──   Expected `block_row$stage_reorthogonalization_seconds` > 0.   Actual comparison: NA <= 0.0   ── Error ('test-validation.R:458:3'): benchmark helpers return timing rows for base and eigencore ──   Error in `utils::Rprofmem(f, threshold = 1)`: memory profiling is not available on this system   Backtrace:       ▆    1. └─eigencore:::benchmark_eigen_methods(...) at test-validation.R:458:3    2. └─base::lapply(...)    3. └─eigencore (local) FUN(X[[i]], ...)    4. └─eigencore:::time_repeated(...)    5. └─bench::mark(...)    6. └─bench (local) eval_one(exprs[[i]], memory)    7. └─utils::Rprofmem(f, threshold = 1)      [ FAIL 23 | WARN 0 | SKIP 19 | PASS 3922 ]   Error:   ! Test failures.   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [15s/16s] OK
• checking PDF version of manual ... OK
• checking HTML version of manual ... OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 1 ERROR