- using R Under development (unstable) (2024-05-07 r86527)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc-14 (GCC) 14.1.0
GNU Fortran (GCC) 14.1.0
- running under: Fedora Linux 36 (Workstation Edition)
- using session charset: UTF-8
- using option ‘--no-stop-on-test-error’
- checking for file ‘editbl/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘editbl’ version ‘1.0.4’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘editbl’ can be installed ... [11s/11s] OK
See the install log for details.
- checking package directory ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [18s/18s] OK
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [10s/10s] OK
Running ‘testthat.R’
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [72s/70s] ERROR
Error(s) in re-building vignettes:
--- re-building ‘howto_relational_db.rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-devel/editbl.Rcheck/vign_test/editbl/vignettes/howto_relational_db_files/figure-html/unnamed-chunk-6-1.png
700x133 pixels, 4x8 bits/pixel, RGB+alpha
Reducing image to 8 bits/pixel, 244 colors in palette
Input IDAT size = 13260 bytes
Input file size = 13342 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4672
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4672
Output IDAT size = 4672 bytes (8588 bytes decrease)
Output file size = 5486 bytes (7856 bytes = 58.88% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/editbl.Rcheck/vign_test/editbl/vignettes/howto_relational_db_files/figure-html/unnamed-chunk-8-1.png
700x100 pixels, 4x8 bits/pixel, RGB+alpha
Reducing image to 8 bits/pixel, 220 colors in palette
Input IDAT size = 8731 bytes
Input file size = 8813 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2998
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2998
Output IDAT size = 2998 bytes (5733 bytes decrease)
Output file size = 3740 bytes (5073 bytes = 57.56% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/editbl.Rcheck/vign_test/editbl/vignettes/howto_relational_db_files/figure-html/unnamed-chunk-10-1.png
700x74 pixels, 4x8 bits/pixel, RGB+alpha
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 2652 bytes
Input file size = 2722 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 934
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 934
Output IDAT size = 934 bytes (1718 bytes decrease)
Output file size = 1004 bytes (1718 bytes = 63.12% decrease)
--- finished re-building ‘howto_relational_db.rmd’
--- re-building ‘howto_relational_db_dm.rmd’ using rmarkdown
Quitting from lines at lines 213-218 [unnamed-chunk-9] (howto_relational_db_dm.rmd)
Error: processing vignette 'howto_relational_db_dm.rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘howto_relational_db_dm.rmd’
--- re-building ‘howto_switch_from_DT.rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-devel/editbl.Rcheck/vign_test/editbl/vignettes/howto_switch_from_DT_files/figure-html/unnamed-chunk-2-1.png
685x625 pixels, 4x8 bits/pixel, RGB+alpha
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 66151 bytes
Input file size = 66317 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23403
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23403
Output IDAT size = 23403 bytes (42748 bytes decrease)
Output file size = 23473 bytes (42844 bytes = 64.60% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/editbl.Rcheck/vign_test/editbl/vignettes/howto_switch_from_DT_files/figure-html/unnamed-chunk-3-1.png
700x133 pixels, 4x8 bits/pixel, RGB+alpha
Reducing image to 8 bits/pixel, 244 colors in palette
Input IDAT size = 15204 bytes
Input file size = 15286 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5447
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 5444
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 5444
Output IDAT size = 5444 bytes (9760 bytes decrease)
Output file size = 6258 bytes (9028 bytes = 59.06% decrease)
--- finished re-building ‘howto_switch_from_DT.rmd’
SUMMARY: processing the following file failed:
‘howto_relational_db_dm.rmd’
Error: Vignette re-building failed.
Execution halted
- checking PDF version of manual ... [10s/11s] OK
- checking HTML version of manual ... OK
- checking for non-standard things in the check directory ... OK
- checking for detritus in the temp directory ... NOTE
Found the following files/directories:
‘Crashpad’
- DONE
Status: 1 ERROR, 1 NOTE