• using R Under development (unstable) (2026-03-14 r89622)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7)     GNU Fortran (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7)
• running under: Fedora Linux 42 (Workstation Edition)
• using session charset: UTF-8 * current time: 2026-03-14 21:11:09 UTC
• using option ‘--no-stop-on-test-error’
• checking for file ‘duckspatial/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘duckspatial’ version ‘0.9.0’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘duckspatial’ can be installed ... [8s/32s] OK See the install log for details.
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking whether startup messages can be suppressed ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [15s/36s] OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [15s/30s] ERROR   Running ‘testthat.R’ [15s/27s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > # This file is part of the standard setup for testthat.   > # It is recommended that you do not modify it.   > #   > # Where should you do additional test configuration?   > # Learn more about the roles of various files in:   > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview   > # * https://testthat.r-lib.org/articles/special-files.html   >   > library(testthat)   > library(duckspatial)   Important: 'crs_column' and 'crs' arguments are deprecated and will be removed in the next version.   If possible, use the default values of these arguments to avoid future issues.   > library(duckdb)   Loading required package: DBI   >   > test_check("duckspatial")   Reading layer `countries' from data source     `/data/gannet/ripley/R/packages/tests-devel/duckspatial.Rcheck/duckspatial/spatial/countries.geojson'     using driver `GeoJSON'   Simple feature collection with 257 features and 6 fields   Geometry type: POLYGON   Dimension: XY   Bounding box: xmin: -178.9125 ymin: -89.9 xmax: 180 ymax: 83.65187   Geodetic CRS: WGS 84   Reading layer `argentina' from data source     `/data/gannet/ripley/R/packages/tests-devel/duckspatial.Rcheck/duckspatial/spatial/argentina.geojson'     using driver `GeoJSON'   Simple feature collection with 1 feature and 6 fields   Geometry type: POLYGON   Dimension: XY   Bounding box: xmin: -73.52455 ymin: -52.39755 xmax: -53.62409 ymax: -21.81793   Geodetic CRS: WGS 84   Reading layer `rivers' from data source     `/data/gannet/ripley/R/packages/tests-devel/duckspatial.Rcheck/duckspatial/spatial/rivers.geojson'     using driver `GeoJSON'   Simple feature collection with 100 features and 1 field   Geometry type: LINESTRING   Dimension: XY   Bounding box: xmin: 2766878 ymin: 2222357 xmax: 3578648 ymax: 2459939   Projected CRS: ETRS89-extended / LAEA Europe   v Temporary view view_test registered   Saving _problems/test-compatibility-28.R   i Table <rt_write_line> dropped   v Table rt_write_line successfully imported   Saving _problems/test-compatibility-63.R   v Temporary view rt_register_line registered   Saving _problems/test-compatibility-92.R   i Table <countries_from_file_compat> dropped   v Table countries_from_file_compat successfully imported   Saving _problems/test-compatibility-112.R   [ FAIL 4 | WARN 1 | SKIP 17 | PASS 3 ]      ══ Skipped tests (17) ══════════════════════════════════════════════════════════   • On CRAN (17): 'test-db_read.R:2:1', 'test-db_register.R:3:1',     'test-db_write.R:3:1', 'test-ddbs_area.R:3:1', 'test-ddbs_bbox.R:3:1',     'test-ddbs_combine.R:3:1', 'test-ddbs_concave_hull.R:3:1',     'test-ddbs_convex_hull.R:3:1', 'test-ddbs_distance.R:3:1',     'test-ddbs_envelope.R:3:1', 'test-ddbs_generate_points.R:5:1',     'test-ddbs_interpolate_aw.R:2:1', 'test-ddbs_join.R:3:1',     'test-ddbs_length.R:3:1', 'test-ddbs_transform.R:5:1',     'test-ddbs_union.R:3:1', 'test-utils.R:2:1'      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test-compatibility.R:28:5'): Compatibility: Arrow Views behave like Persistent Tables ──   Error in `dbSendQuery(conn, statement, ...)`: Unknown column type for prepare: GEOMETRY   i Context: rapi_prepare   Backtrace:        ▆     1. ├─duckspatial::ddbs_read_vector(conn, "view_test", crs = 4326) at test-compatibility.R:28:5     2. │ ├─DBI::dbListFields(conn, name_list$query_name)     3. │ └─DBI::dbListFields(conn, name_list$query_name)     4. │ ├─DBI::dbGetQuery(...)     5. │ └─DBI::dbGetQuery(...)     6. │ └─DBI (local) .local(conn, statement, ...)     7. │ ├─DBI::dbSendQuery(conn, statement, ...)     8. │ └─duckdb::dbSendQuery(conn, statement, ...)     9. │ └─duckdb (local) .local(conn, statement, ...)    10. │ └─duckdb:::rethrow_rapi_prepare(conn@conn_ref, statement, env)    11. │ ├─rlang::try_fetch(...)    12. │ │ ├─base::tryCatch(...)    13. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)    14. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])    15. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)    16. │ │ └─base::withCallingHandlers(...)    17. │ └─duckdb:::rapi_prepare(conn, query, env)    18. ├─duckdb (local) `<fn>`("rapi_prepare", "Unknown column type for prepare: GEOMETRY")    19. │ └─rlang::abort(error_parts, class = "duckdb_error", !!!fields)    20. │ └─rlang:::signal_abort(cnd, .file)    21. │ └─base::signalCondition(cnd)    22. └─rlang (local) `<fn>`(`<dckdb_rr>`)    23. └─handlers[[1L]](cnd)    24. └─duckdb:::rethrow_error_from_rapi(e, call)    25. └─rlang::abort(msg, call = call)   ── Error ('test-compatibility.R:63:9'): Round trip: write -> read for various geometry types ──   Error in `get_geom_name(conn, name_list$query_name)`: The table <rt_write_line> does not exist.   Backtrace:       ▆    1. └─duckspatial::ddbs_read_vector(conn, table_name) at test-compatibility.R:63:9    2. └─duckspatial:::get_geom_name(conn, name_list$query_name)    3. └─cli::cli_abort("The table <{x}> does not exist.")    4. └─rlang::abort(...)   ── Error ('test-compatibility.R:92:9'): Round trip: register -> read for various geometry types ──   Error in `dbSendQuery(conn, statement, ...)`: Unknown column type for prepare: GEOMETRY   i Context: rapi_prepare   Backtrace:        ▆     1. ├─duckspatial::ddbs_read_vector(conn, view_name) at test-compatibility.R:92:9     2. │ ├─DBI::dbListFields(conn, name_list$query_name)     3. │ └─DBI::dbListFields(conn, name_list$query_name)     4. │ ├─DBI::dbGetQuery(...)     5. │ └─DBI::dbGetQuery(...)     6. │ └─DBI (local) .local(conn, statement, ...)     7. │ ├─DBI::dbSendQuery(conn, statement, ...)     8. │ └─duckdb::dbSendQuery(conn, statement, ...)     9. │ └─duckdb (local) .local(conn, statement, ...)    10. │ └─duckdb:::rethrow_rapi_prepare(conn@conn_ref, statement, env)    11. │ ├─rlang::try_fetch(...)    12. │ │ ├─base::tryCatch(...)    13. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)    14. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])    15. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)    16. │ │ └─base::withCallingHandlers(...)    17. │ └─duckdb:::rapi_prepare(conn, query, env)    18. ├─duckdb (local) `<fn>`("rapi_prepare", "Unknown column type for prepare: GEOMETRY")    19. │ └─rlang::abort(error_parts, class = "duckdb_error", !!!fields)    20. │ └─rlang:::signal_abort(cnd, .file)    21. │ └─base::signalCondition(cnd)    22. └─rlang (local) `<fn>`(`<dckdb_rr>`)    23. └─handlers[[1L]](cnd)    24. └─duckdb:::rethrow_error_from_rapi(e, call)    25. └─rlang::abort(msg, call = call)   ── Error ('test-compatibility.R:112:5'): Compatibility: Writing from file path and reading back ──   Error in `get_geom_name(conn, name_list$query_name)`: The table <countries_from_file_compat> does not exist.   Backtrace:       ▆    1. └─duckspatial::ddbs_read_vector(conn, table_name) at test-compatibility.R:112:5    2. └─duckspatial:::get_geom_name(conn, name_list$query_name)    3. └─cli::cli_abort("The table <{x}> does not exist.")    4. └─rlang::abort(...)      [ FAIL 4 | WARN 1 | SKIP 17 | PASS 3 ]   Error:   ! Test failures.   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [31s/125s] ERROR Error(s) in re-building vignettes: --- re-building ‘aw_interpolation.Rmd’ using rmarkdown Quitting from aw_interpolation.Rmd:67-78 [unnamed-chunk-2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `get_geom_name()`: ! The table <temp_view_a1131990_5989_4b00_bcbb_8886aa5135f1> does not   exist. --- Backtrace:     ▆  1. └─duckspatial::ddbs_interpolate_aw(...)  2. └─duckspatial:::get_geom_name(conn, t_list$query_name) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'aw_interpolation.Rmd' failed with diagnostics: The table <temp_view_a1131990_5989_4b00_bcbb_8886aa5135f1> does not exist. --- failed re-building ‘aw_interpolation.Rmd’ --- re-building ‘benchmark.Rmd’ using rmarkdown --- finished re-building ‘benchmark.Rmd’ --- re-building ‘duckspatial.Rmd’ using rmarkdown [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘duckspatial.Rmd’ --- re-building ‘spatial_joins.Rmd’ using rmarkdown [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘spatial_joins.Rmd’ SUMMARY: processing the following file failed:   ‘aw_interpolation.Rmd’ Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... [13s/42s] OK
• checking HTML version of manual ... [14s/37s] OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 2 ERRORs