* installing *source* package ‘diversityForest’ ...
** package ‘diversityForest’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (GCC) 13.2.0’
using C++17
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/diversityForest/src'
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DR_BUILD -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c AAA_check_cpp11.cpp -o AAA_check_cpp11.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DR_BUILD -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c Data.cpp -o Data.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DR_BUILD -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c DataChar.cpp -o DataChar.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DR_BUILD -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c DataFloat.cpp -o DataFloat.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DR_BUILD -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c DataSparse.cpp -o DataSparse.o
In file included from DataSparse.cpp:29:
DataSparse.h: In member function 'virtual double diversityForest::DataSparse::get(size_t, size_t) const':
DataSparse.h:53:12: warning: unused variable 'col_permuted' [-Wunused-variable]
   53 |     size_t col_permuted = col;
      |            ^~~~~~~~~~~~
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DR_BUILD -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c Forest.cpp -o Forest.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DR_BUILD -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c ForestClassification.cpp -o ForestClassification.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DR_BUILD -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c ForestProbability.cpp -o ForestProbability.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DR_BUILD -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c ForestRegression.cpp -o ForestRegression.o
ForestRegression.cpp: In member function 'virtual void diversityForest::ForestRegression::computePredictionErrorInternal()':
ForestRegression.cpp:143:35: warning: 'value' may be used uninitialized [-Wmaybe-uninitialized]
  143 |       predictions[0][0][sampleID] += value;
ForestRegression.cpp:135:14: note: 'value' was declared here
  135 |       double value;
      |              ^~~~~
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DR_BUILD -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c ForestSurvival.cpp -o ForestSurvival.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DR_BUILD -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DR_BUILD -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c Tree.cpp -o Tree.o
In file included from Tree.cpp:18:
utility.h: In instantiation of 'std::vector<T> diversityForest::reorder(std::vector<T>&, const std::vector<long unsigned int>&) [with T = std::vector<long unsigned int>]':
Tree.cpp:1294:41:   required from here
utility.h:516:31: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<long unsigned int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  516 |         for ( int s = 1, d; s < order.size(); ++ s ) {
      |                             ~~^~~~~~~~~~~~~~
utility.h: In instantiation of 'std::vector<T> diversityForest::reorder(std::vector<T>&, const std::vector<long unsigned int>&) [with T = long unsigned int]':
Tree.cpp:1295:36:   required from here
utility.h:516:31: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<long unsigned int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
utility.h: In instantiation of 'std::vector<T> diversityForest::reorder(std::vector<T>&, const std::vector<long unsigned int>&) [with T = std::vector<std::vector<bool> >]':
Tree.cpp:1296:38:   required from here
utility.h:516:31: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<long unsigned int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
utility.h: In instantiation of 'std::vector<T> diversityForest::reorder(std::vector<T>&, const std::vector<long unsigned int>&) [with T = std::vector<std::vector<double> >]':
Tree.cpp:1297:41:   required from here
utility.h:516:31: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<long unsigned int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
In file included from /usr/local/gcc13/include/c++/13.2.0/string:51,
                 from /usr/local/gcc13/include/c++/13.2.0/bits/locale_classes.h:40,
                 from /usr/local/gcc13/include/c++/13.2.0/bits/ios_base.h:41,
                 from /usr/local/gcc13/include/c++/13.2.0/streambuf:43,
                 from /usr/local/gcc13/include/c++/13.2.0/bits/streambuf_iterator.h:35,
                 from /usr/local/gcc13/include/c++/13.2.0/iterator:66,
                 from Tree.cpp:12:
In function 'constexpr const _Tp& std::min(const _Tp&, const _Tp&) [with _Tp = long unsigned int]',
    inlined from 'void diversityForest::Tree::drawSplitsUnivariate(size_t, size_t, std::vector<std::pair<long unsigned int, double> >&)' at Tree.cpp:832:29:
/usr/local/gcc13/include/c++/13.2.0/bits/stl_algobase.h:238:7: warning: 'n_triedsplitscandidate' may be used uninitialized [-Wmaybe-uninitialized]
  238 |       if (__b < __a)
      |       ^~
Tree.cpp: In member function 'void diversityForest::Tree::drawSplitsUnivariate(size_t, size_t, std::vector<std::pair<long unsigned int, double> >&)':
Tree.cpp:807:12: note: 'n_triedsplitscandidate' was declared here
  807 |     size_t n_triedsplitscandidate;
      |            ^~~~~~~~~~~~~~~~~~~~~~
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DR_BUILD -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c TreeClassification.cpp -o TreeClassification.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DR_BUILD -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c TreeProbability.cpp -o TreeProbability.o
TreeClassification.cpp: In member function 'virtual double diversityForest::TreeClassification::computePredictionAccuracyInternal()':
TreeClassification.cpp:234:5: warning: 'predicted_value' may be used uninitialized [-Wmaybe-uninitialized]
  234 |     if (predicted_value != real_value) {
      |     ^~
TreeClassification.cpp:226:12: note: 'predicted_value' was declared here
  226 |     double predicted_value;
      |            ^~~~~~~~~~~~~~~
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DR_BUILD -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c TreeRegression.cpp -o TreeRegression.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DR_BUILD -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c TreeSurvival.cpp -o TreeSurvival.o
TreeClassification.cpp: In member function 'bool diversityForest::TreeClassification::findBestSplitMultivariate(size_t, std::vector<long unsigned int>, std::vector<std::vector<long unsigned int> >, std::vector<std::vector<std::vector<bool> > >, std::vector<std::vector<std::vector<double> > >)':
TreeClassification.cpp:475:23: warning: 'best_split_type' may be used uninitialized [-Wmaybe-uninitialized]
  475 |   split_types[nodeID] = best_split_type;
TreeClassification.cpp:396:10: note: 'best_split_type' was declared here
  396 |   size_t best_split_type;
      |          ^~~~~~~~~~~~~~~
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DR_BUILD -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c divforCpp.cpp -o divforCpp.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DR_BUILD -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c utility.cpp -o utility.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DR_BUILD -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c utilityRcpp.cpp -o utilityRcpp.o
TreeProbability.cpp: In member function 'bool diversityForest::TreeProbability::findBestSplitMultivariate(size_t, std::vector<long unsigned int>, std::vector<std::vector<long unsigned int> >, std::vector<std::vector<std::vector<bool> > >, std::vector<std::vector<std::vector<double> > >)':
TreeProbability.cpp:347:23: warning: 'best_split_type' may be used uninitialized [-Wmaybe-uninitialized]
  347 |   split_types[nodeID] = best_split_type;
TreeProbability.cpp:266:10: note: 'best_split_type' was declared here
  266 |   size_t best_split_type;
      |          ^~~~~~~~~~~~~~~
TreeRegression.cpp: In member function 'virtual double diversityForest::TreeRegression::computePredictionAccuracyInternal()':
TreeRegression.cpp:219:5: warning: 'predicted_value' may be used uninitialized [-Wmaybe-uninitialized]
  219 |     if (predicted_value != real_value) {
      |     ^~
TreeRegression.cpp:211:12: note: 'predicted_value' was declared here
  211 |     double predicted_value;
      |            ^~~~~~~~~~~~~~~
TreeRegression.cpp: In member function 'bool diversityForest::TreeRegression::findBestSplitMultivariate(size_t, std::vector<long unsigned int>, std::vector<std::vector<long unsigned int> >, std::vector<std::vector<std::vector<bool> > >, std::vector<std::vector<std::vector<double> > >)':
TreeRegression.cpp:451:23: warning: 'best_split_type' may be used uninitialized [-Wmaybe-uninitialized]
  451 |   split_types[nodeID] = best_split_type;
TreeRegression.cpp:372:10: note: 'best_split_type' was declared here
  372 |   size_t best_split_type;
      |          ^~~~~~~~~~~~~~~
TreeSurvival.cpp: In member function 'bool diversityForest::TreeSurvival::findBestSplitMultivariate(size_t, std::vector<long unsigned int>, std::vector<std::vector<long unsigned int> >, std::vector<std::vector<std::vector<bool> > >, std::vector<std::vector<std::vector<double> > >)':
TreeSurvival.cpp:414:23: warning: 'best_split_type' may be used uninitialized [-Wmaybe-uninitialized]
  414 |   split_types[nodeID] = best_split_type;
TreeSurvival.cpp:296:10: note: 'best_split_type' was declared here
  296 |   size_t best_split_type;
      |          ^~~~~~~~~~~~~~~
In file included from divforCpp.cpp:44:
DataSparse.h: In member function 'virtual double diversityForest::DataSparse::get(size_t, size_t) const':
DataSparse.h:53:12: warning: unused variable 'col_permuted' [-Wunused-variable]
   53 |     size_t col_permuted = col;
      |            ^~~~~~~~~~~~
g++-13 -std=gnu++17 -shared -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o diversityForest.so AAA_check_cpp11.o Data.o DataChar.o DataFloat.o DataSparse.o Forest.o ForestClassification.o ForestProbability.o ForestRegression.o ForestSurvival.o RcppExports.o Tree.o TreeClassification.o TreeProbability.o TreeRegression.o TreeSurvival.o divforCpp.o utility.o utilityRcpp.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/diversityForest/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/diversityForest/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/diversityForest/src'
installing to /data/gannet/ripley/R/packages/tests-devel/diversityForest.Rcheck/00LOCK-diversityForest/00new/diversityForest/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (diversityForest)