* installing *source* package ‘defm’ ...
** this is package ‘defm’ version ‘0.2.1.0’
** package ‘defm’ successfully unpacked and MD5 sums checked
** using staged installation
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C++... yes
checking whether g++ -std=gnu++20 accepts -g... yes
checking for g++ -std=gnu++20 option to enable C++11 features... none needed
checking how to run the C++ preprocessor... g++ -std=gnu++20 -E
checking whether the compiler supports GNU C++... (cached) yes
checking whether g++ -std=gnu++20 accepts -g... (cached) yes
checking for g++ -std=gnu++20 option to enable C++11 features... (cached) none needed
checking whether we have a suitable tempdir... /tmp/RtmpLVcDbk/working_dir
checking whether R CMD SHLIB can already compile programs using OpenMP... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C++ compiler: ‘g++ (GCC) 16.1.1 20260515 (Red Hat 16.1.1-2)’
make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-devel/defm/src'
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -I'/data/localhost/ripley/R/test-dev/Rcpp/include' -I'/data/localhost/ripley/R/test-dev/barry/include' -I/usr/local/include -fopenmp -I../inst/include/ -Dprintf_barry=Rprintf -DBARRY_USER_INTERRUPT="Rcpp::checkUserInterrupt();" -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -I'/data/localhost/ripley/R/test-dev/Rcpp/include' -I'/data/localhost/ripley/R/test-dev/barry/include' -I/usr/local/include -fopenmp -I../inst/include/ -Dprintf_barry=Rprintf -DBARRY_USER_INTERRUPT="Rcpp::checkUserInterrupt();" -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c counters.cpp -o counters.o
In file included from /data/localhost/ripley/R/test-dev/barry/include/barry/barry.hpp:83,
from counters.cpp:2:
/data/localhost/ripley/R/test-dev/barry/include/barry/model-meat.hpp: In member function ‘double barry::Model<Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>::likelihood_total(const std::vector<double>&, bool, size_t, bool)’:
/data/localhost/ripley/R/test-dev/barry/include/barry/model-meat.hpp:1131:36: warning: ‘-’ operator for reductions deprecated in OpenMP 5.2 [-Wdeprecated-openmp]
1131 | #pragma omp simd reduction(-:res)
| ^
| +
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -I'/data/localhost/ripley/R/test-dev/Rcpp/include' -I'/data/localhost/ripley/R/test-dev/barry/include' -I/usr/local/include -fopenmp -I../inst/include/ -Dprintf_barry=Rprintf -DBARRY_USER_INTERRUPT="Rcpp::checkUserInterrupt();" -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c defm-object.cpp -o defm-object.o
In file included from /data/localhost/ripley/R/test-dev/barry/include/barry/barry.hpp:83,
from defm-object.cpp:2:
/data/localhost/ripley/R/test-dev/barry/include/barry/model-meat.hpp: In member function ‘double barry::Model<Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>::likelihood_total(const std::vector<double>&, bool, size_t, bool)’:
/data/localhost/ripley/R/test-dev/barry/include/barry/model-meat.hpp:1131:36: warning: ‘-’ operator for reductions deprecated in OpenMP 5.2 [-Wdeprecated-openmp]
1131 | #pragma omp simd reduction(-:res)
| ^
| +
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -I'/data/localhost/ripley/R/test-dev/Rcpp/include' -I'/data/localhost/ripley/R/test-dev/barry/include' -I/usr/local/include -fopenmp -I../inst/include/ -Dprintf_barry=Rprintf -DBARRY_USER_INTERRUPT="Rcpp::checkUserInterrupt();" -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c terms.cpp -o terms.o
In file included from /data/localhost/ripley/R/test-dev/barry/include/barry/barry.hpp:83,
from terms.cpp:2:
/data/localhost/ripley/R/test-dev/barry/include/barry/model-meat.hpp: In member function ‘double barry::Model<Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>::likelihood_total(const std::vector<double>&, bool, size_t, bool)’:
/data/localhost/ripley/R/test-dev/barry/include/barry/model-meat.hpp:1131:36: warning: ‘-’ operator for reductions deprecated in OpenMP 5.2 [-Wdeprecated-openmp]
1131 | #pragma omp simd reduction(-:res)
| ^
| +
g++ -std=gnu++20 -shared -L/usr/local/lib64 -o defm.so RcppExports.o counters.o defm-object.o terms.o -fopenmp
make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-devel/defm/src'
make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-devel/defm/src'
make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-devel/defm/src'
installing to /data/localhost/ripley/R/packages/tests-devel/defm.Rcheck/00LOCK-defm/00new/defm/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (defm)