- using R Under development (unstable) (2025-09-11 r88810)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)
GNU Fortran (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)
- running under: Fedora Linux 42 (Workstation Edition)
- using session charset: UTF-8
- using option ‘--no-stop-on-test-error’
- checking for file ‘cylcop/DESCRIPTION’ ... OK
- this is package ‘cylcop’ version ‘0.2.0’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘cylcop’ can be installed ... [38s/46s] OK
See the install log for details.
- checking package directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [59s/80s] OK
- checking Rd files ... [11s/12s] NOTE
checkRd: (-1) gammamix.Rd:47-48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gammamix.Rd:49-51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gammamix.Rd:52-53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gammamix.Rd:54-55: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) joint.Rd:41-42: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) joint.Rd:43-45: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) joint.Rd:46-47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) lnormmix.Rd:44-45: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) lnormmix.Rd:46-48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) lnormmix.Rd:49-50: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) lnormmix.Rd:51-52: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) normmix.Rd:43-44: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) normmix.Rd:45-47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) normmix.Rd:48-49: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) normmix.Rd:50-51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) plot_joint_box.Rd:61: Lost braces
61 | and step lengths (code{x}).
| ^
checkRd: (-1) vonmisesmix.Rd:40-41: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) vonmisesmix.Rd:42-44: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) vonmisesmix.Rd:45-46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) vonmisesmix.Rd:47-48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) weibullmix.Rd:44-45: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) weibullmix.Rd:46-48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) weibullmix.Rd:49-50: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) weibullmix.Rd:51-52: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) wrappedcauchy.Rd:43-44: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) wrappedcauchy.Rd:45-47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) wrappedcauchy.Rd:48-49: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) wrappedcauchy.Rd:50-51: Lost braces in \itemize; \value handles \item{}{} directly
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking examples ... [27s/31s] ERROR
Running examples in ‘cylcop-Ex.R’ failed
The error most likely occurred in:
> ### Name: plot_circ_hist
> ### Title: Circular Histogram of Turn Angles
> ### Aliases: plot_circ_hist
>
> ### ** Examples
>
> set.seed(123)
>
> theta <- cylcop::rvonmisesmix(n = 100,
+ mu = c(0, pi),
+ kappa = c(5, 2),
+ prop = c(4, 2)
+ )
> plot1 <- plot_circ_hist(theta)
Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0.
ℹ Please use `linewidth` instead.
ℹ The deprecated feature was likely used in the cylcop package.
Please report the issue at <https://github.com/r-lib/devtools/issues>.
Error in `geom_label()`:
! Problem while setting up geom aesthetics.
ℹ Error occurred in the 4th layer.
Caused by error in `list_sizes()`:
! `x$label` must be a vector, not an expression vector.
Backtrace:
▆
1. ├─cylcop::plot_circ_hist(theta)
2. │ ├─base::suppressWarnings(cowplot::ggdraw(p))
3. │ │ └─base::withCallingHandlers(...)
4. │ └─cowplot::ggdraw(p)
5. │ └─cowplot::draw_plot(plot)
6. │ ├─cowplot::as_grob(plot)
7. │ └─cowplot:::as_grob.ggplot(plot)
8. │ └─ggplot2::ggplotGrob(plot)
9. │ ├─ggplot2::ggplot_gtable(ggplot_build(x))
10. │ │ └─ggplot2:::attach_plot_env(data@plot@plot_env)
11. │ │ └─base::options(ggplot2_plot_env = env)
12. │ ├─ggplot2::ggplot_build(x)
13. │ └─ggplot2 (local) `ggplot_build.ggplot2::ggplot`(x)
14. │ └─ggplot2:::by_layer(...)
15. │ ├─rlang::try_fetch(...)
16. │ │ ├─base::tryCatch(...)
17. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
18. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
19. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
20. │ │ └─base::withCallingHandlers(...)
21. │ └─ggplot2 (local) f(l = layers[[i]], d = data[[i]])
22. │ └─l$compute_geom_2(d, theme = plot@theme)
23. │ └─ggplot2 (local) compute_geom_2(..., self = self)
24. │ └─self$geom$use_defaults(...)
25. │ └─ggplot2 (local) use_defaults(..., self = self)
26. │ └─ggplot2:::check_aesthetics(new_params, nrow(data))
27. │ └─vctrs::list_sizes(x)
28. └─vctrs:::stop_scalar_type(`<fn>`(`<expression>`), "x$label", `<env>`)
29. └─vctrs:::stop_vctrs(...)
30. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call)
Execution halted
- checking PDF version of manual ... [15s/19s] OK
- checking HTML version of manual ... OK
- checking for non-standard things in the check directory ... OK
- checking for detritus in the temp directory ... OK
- DONE
Status: 1 ERROR, 1 NOTE