• using R Under development (unstable) (2025-07-18 r88430)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)     GNU Fortran (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)
• running under: Fedora Linux 42 (Workstation Edition)
• using session charset: UTF-8
• using option ‘--no-stop-on-test-error’
• checking for file ‘crosstalkr/DESCRIPTION’ ... OK
• this is package ‘crosstalkr’ version ‘1.0.5’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... INFO Package suggested but not available for checking: ‘EnsDb.Hsapiens.v86’
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘crosstalkr’ can be installed ... [20s/29s] OK See the install log for details.
• used C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [9s/12s] OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [73s/87s] ERROR   Running ‘testthat.R’ [73s/87s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > library(testthat)   > library(crosstalkr)   >   > test_check("crosstalkr")   [ FAIL 1 | WARN 7 | SKIP 12 | PASS 80 ]      ══ Skipped tests (12) ══════════════════════════════════════════════════════════   • On CRAN (6): 'test-filter.R:33:3', 'test-ppi_ingest.R:18:3',     'test-ppi_ingest.R:26:3', 'test-ppi_ingest.R:32:3', 'test-utils.R:11:3',     'test-utils.R:17:3'   • relies on installed data (2): 'test-utils.R:52:3', 'test-utils.R:59:3'   • relies on system file (2): 'test-calc_np.R:1:1',     'test-node_suppression.R:1:1'   • skipping due to long download times (2): 'test-ppi_ingest.R:3:3',     'test-ppi_ingest.R:9:3'      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test-ppi_ingest.R:41:3'): to_taxon_id works for a variety of species ──   Error in `open.connection(structure(4L, class = c("curl", "connection"), conn_id = <pointer: 0x4bac02a0>),       "rb")`: cannot open the connection   Backtrace:        ▆     1. ├─testthat::expect_equal(...) at test-ppi_ingest.R:41:3     2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")     3. │ └─rlang::eval_bare(expr, quo_get_env(quo))     4. ├─crosstalkr::to_taxon_id("pseudomonas aeruginosa")     5. │ └─crosstalkr::supported_species()     6. │ └─readr::read_tsv(file = "https://stringdb-static.org/download/species.v11.5.txt")     7. │ └─vroom::vroom(...)     8. │ └─vroom:::vroom_(...)     9. ├─base (local) `<fn>`(`<curl>`, "rb")    10. └─base::open.connection(`<curl>`, "rb")      [ FAIL 1 | WARN 7 | SKIP 12 | PASS 80 ]   Error: Test failures   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [83s/116s] OK
• checking PDF version of manual ... [10s/17s] OK
• checking HTML version of manual ... OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 1 ERROR