* installing *source* package ‘clv’ ...
** package ‘clv’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (GCC) 13.2.0’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/clv/src'
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c SD_SDbw_indicies.c -o SD_SDbw_indicies.o
SD_SDbw_indicies.c: In function 'Scatt':
SD_SDbw_indicies.c:80:38: warning: unused variable 'tmp' [-Wunused-variable]
   80 |         double sum_cls_var_norm = 0, tmp;
      |                                      ^~~
SD_SDbw_indicies.c:42:17: warning: unused variable 'cluster_center' [-Wunused-variable]
   42 |         double *cluster_center, *cluster_variance;
      |                 ^~~~~~~~~~~~~~
SD_SDbw_indicies.c:38:17: warning: unused variable 'mean' [-Wunused-variable]
   38 |         double *mean, *variance;
      |                 ^~~~
SD_SDbw_indicies.c:32:16: warning: unused variable 'dist' [-Wunused-variable]
   32 |         double dist;
      |                ^~~~
SD_SDbw_indicies.c:30:16: warning: unused variable 'j' [-Wunused-variable]
   30 |         int i, j, obj_num, dim_num, clust_num, protect_num;
      |                ^
SD_SDbw_indicies.c: In function 'Dis':
SD_SDbw_indicies.c:159:33: warning: unused variable 'diff' [-Wunused-variable]
  159 |         double result = 0, tmp, diff, tmp_denominator;
      |                                 ^~~~
SD_SDbw_indicies.c:147:19: warning: unused variable 'k' [-Wunused-variable]
  147 |         int i, j, k, clust_num, dim_num, protect_num = 0;
      |                   ^
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c VCLDefines.c -o VCLDefines.o
VCLDefines.c: In function 'confusionMatrix':
VCLDefines.c:307:24: warning: variable 'set_size2' set but not used [-Wunused-but-set-variable]
  307 |         int set_size1, set_size2;
      |                        ^~~~~~~~~
VCLDefines.c: In function 'clusterAttrib':
VCLDefines.c:372:17: warning: variable 'mean' set but not used [-Wunused-but-set-variable]
  372 |         double *mean = NULL;
      |                 ^~~~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c cluster_scatter.c -o cluster_scatter.o
cluster_scatter.c: In function 'clusterScatterMeasures':
cluster_scatter.c:53:14: warning: unused variable 'mean_sxp' [-Wunused-variable]
   53 |         SEXP mean_sxp;
      |              ^~~~~~~~
cluster_scatter.c: In function 'clusterScatterMeasuresDissMx':
cluster_scatter.c:311:28: warning: unused variable 'dim_num' [-Wunused-variable]
  311 |         int i, j, obj_num, dim_num, clust_num, protect_num;
      |                            ^~~~~~~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c cluster_stability.c -o cluster_stability.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c connectivity.c -o connectivity.o
connectivity.c: In function 'connectivity':
connectivity.c:16:37: warning: unused variable 'clust_num' [-Wunused-variable]
   16 |         int i, j, obj_num, dim_num, clust_num, protect_num;
      |                                     ^~~~~~~~~
connectivity.c: In function 'connectivityDissMx':
connectivity.c:132:37: warning: unused variable 'clust_num' [-Wunused-variable]
  132 |         int i, j, obj_num, dim_num, clust_num, protect_num;
      |                                     ^~~~~~~~~
connectivity.c:132:28: warning: unused variable 'dim_num' [-Wunused-variable]
  132 |         int i, j, obj_num, dim_num, clust_num, protect_num;
      |                            ^~~~~~~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c dot_product.c -o dot_product.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c matrix_scatter_measures.c -o matrix_scatter_measures.o
matrix_scatter_measures.c: In function 'whithinClusterScatterMatrix':
matrix_scatter_measures.c:33:13: warning: unused variable 'cluster_num' [-Wunused-variable]
   33 |         int cluster_num;
      |             ^~~~~~~~~~~
matrix_scatter_measures.c:9:20: warning: unused variable 'pos' [-Wunused-variable]
    9 |         int i,j,k, pos;
      |                    ^~~
matrix_scatter_measures.c: In function 'betweenClusterScatterMatrix':
matrix_scatter_measures.c:78:13: warning: unused variable 'cluster_num' [-Wunused-variable]
   78 |         int cluster_num;
      |             ^~~~~~~~~~~
matrix_scatter_measures.c:54:20: warning: unused variable 'pos' [-Wunused-variable]
   54 |         int i,j,k, pos;
      |                    ^~~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c optimal_assignment.c -o optimal_assignment.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c standard_external_measures.c -o standard_external_measures.o
gcc-13 -shared -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -fpic -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o clv.so SD_SDbw_indicies.o VCLDefines.o cluster_scatter.o cluster_stability.o connectivity.o dot_product.o matrix_scatter_measures.o optimal_assignment.o standard_external_measures.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/clv/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/clv/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/clv/src'
installing to /data/gannet/ripley/R/packages/tests-devel/clv.Rcheck/00LOCK-clv/00new/clv/libs
** R
** demo
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (clv)