- using R Under development (unstable) (2026-07-16 r90262)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc (GCC) 16.1.1 20260515 (Red Hat 16.1.1-2)
GNU Fortran (GCC) 16.1.1 20260515 (Red Hat 16.1.1-2)
- running under: Fedora Linux 44 (Server Edition)
- using session charset: UTF-8
* current time: 2026-07-16 12:59:01 UTC
- using option ‘--no-stop-on-test-error’
- checking for file ‘cluster/DESCRIPTION’ ... OK
- this is package ‘cluster’ version ‘2.1.8.2’
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘cluster’ can be installed ... [9s/26s] OK
See the install log for details.
- used C compiler: ‘gcc (GCC) 16.1.1 20260515 (Red Hat 16.1.1-2)’
- checking package directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [8s/24s] NOTE
Found calls to structure() using deprecated special names:
cluster/R/pam.q (.Names: 1)
'.Names' should be changed to 'names'.
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking pragmas in C/C++ headers and code ... OK
- checking compilation flags used ... OK
- checking compiled code ... OK
- checking examples ... OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [45s/114s] NOTE
Running ‘agnes-ex.R’
Comparing ‘agnes-ex.Rout’ to ‘agnes-ex.Rout.save’ ... OK
Running ‘clara-NAs.R’
Comparing ‘clara-NAs.Rout’ to ‘clara-NAs.Rout.save’ ...
635,637d634
< Warning message:
< In structure(res$obj, .Names = c("build", "swap")) :
< Replacing special names '.Names' is deprecated; use 'names' instead.
Running ‘clara-ex.R’
Comparing ‘clara-ex.Rout’ to ‘clara-ex.Rout.save’ ... OK
Running ‘clara-gower.R’
Running ‘clara.R’
Comparing ‘clara.Rout’ to ‘clara.Rout.save’ ...
147,149d146
< Warning message:
< In structure(res$obj, .Names = c("build", "swap")) :
< Replacing special names '.Names' is deprecated; use 'names' instead.
Running ‘clusplot-out.R’
Comparing ‘clusplot-out.Rout’ to ‘clusplot-out.Rout.save’ ...
42,48d41
< Warning messages:
< 1: In structure(res$obj, .Names = c("build", "swap")) :
< Replacing special names '.Names' is deprecated; use 'names' instead.
< 2: In structure(res$obj, .Names = c("build", "swap")) :
< Replacing special names '.Names' is deprecated; use 'names' instead.
< 3: In structure(res$obj, .Names = c("build", "swap")) :
< Replacing special names '.Names' is deprecated; use 'names' instead.
95,103d87
< Warning messages:
< 1: In structure(res$obj, .Names = c("build", "swap")) :
< Replacing special names '.Names' is deprecated; use 'names' instead.
< 2: In structure(res$obj, .Names = c("build", "swap")) :
< Replacing special names '.Names' is deprecated; use 'names' instead.
< 3: In structure(res$obj, .Names = c("build", "swap")) :
< Replacing special names '.Names' is deprecated; use 'names' instead.
< 4: In structure(res$obj, .Names = c("build", "swap")) :
< Replacing special names '.Names' is deprecated; use 'names' instead.
119,121d102
< Warning message:
< In structure(res$obj, .Names = c("build", "swap")) :
< Replacing special names '.Names' is deprecated; use 'names' instead.
Running ‘daisy-ex.R’
Comparing ‘daisy-ex.Rout’ to ‘daisy-ex.Rout.save’ ... OK
Running ‘diana-boots.R’
Running ‘diana-ex.R’
Comparing ‘diana-ex.Rout’ to ‘diana-ex.Rout.save’ ... OK
Running ‘ellipsoid-ex.R’
Comparing ‘ellipsoid-ex.Rout’ to ‘ellipsoid-ex.Rout.save’ ... OK
Running ‘fanny-ex.R’
Comparing ‘fanny-ex.Rout’ to ‘fanny-ex.Rout.save’ ... OK
Running ‘mona.R’
Comparing ‘mona.Rout’ to ‘mona.Rout.save’ ... OK
Running ‘pam.R’ [33s/81s]
Comparing ‘pam.Rout’ to ‘pam.Rout.save’ ...
33,35d32
< Warning message:
< In structure(res$obj, .Names = c("build", "swap")) :
< Replacing special names '.Names' is deprecated; use 'names' instead.
38,40d34
< Warning message:
< In structure(res$obj, .Names = c("build", "swap")) :
< Replacing special names '.Names' is deprecated; use 'names' instead.
42,44d35
< Warning message:
< In structure(res$obj, .Names = c("build", "swap")) :
< Replacing special names '.Names' is deprecated; use 'names' instead.
47,49d37
< Warning message:
< In structure(res$obj, .Names = c("build", "swap")) :
< Replacing special names '.Names' is deprecated; use 'names' instead.
64,68d51
< Warning messages:
< 1: In structure(res$obj, .Names = c("build", "swap")) :
< Replacing special names '.Names' is deprecated; use 'names' instead.
< 2: In structure(res$obj, .Names = c("build", "swap")) :
< Replacing special names '.Names' is deprecated; use 'names' instead.
363,365d345
< Warning message:
< In structure(res$obj, .Names = c("build", "swap")) :
< Replacing special names '.Names' is deprecated; use 'names' instead.
367,369d346
< Warning message:
< In structure(res$obj, .Names = c("build", "swap")) :
< Replacing special names '.Names' is deprecated; use 'names' instead.
373,375d349
< Warning message:
< In structure(res$obj, .Names = c("build", "swap")) :
< Replacing special names '.Names' is deprecated; use 'names' instead.
780,782d753
< Warning message:
< In structure(res$obj, .Names = c("build", "swap")) :
< Replacing special names '.Names' is deprecated; use 'names' instead.
803,805d773
< Warning message:
< In structure(res$obj, .Names = c("build", "swap")) :
< Replacing special names '.Names' is deprecated; use 'names' instead.
828,830d795
< Warning message:
< In structure(res$obj, .Names = c("build", "swap")) :
< Replacing special names '.Names' is deprecated; use 'names' instead.
948,950d912
< Warning message:
< In structure(res$obj, .Names = c("build", "swap")) :
< Replacing special names '.Names' is deprecated; use 'names' instead.
996,998d957
< Warning message:
< In structure(res$obj, .Names = c("build", "swap")) :
< Replacing special names '.Names' is deprecated; use 'names' instead.
1074,1076d1032
< Warning message:
< In structure(res$obj, .Names = c("build", "swap")) :
< Replacing special names '.Names' is deprecated; use 'names' instead.
1091,1093d1046
< Warning message:
< In structure(res$obj, .Names = c("build", "swap")) :
< Replacing special names '.Names' is deprecated; use 'names' instead.
1124,1126d1076
< Warning message:
< In structure(res$obj, .Names = c("build", "swap")) :
< Replacing special names '.Names' is deprecated; use 'names' instead.
1129,1131d1078
< Warning message:
< In structure(res$obj, .Names = c("build", "swap")) :
< Replacing special names '.Names' is deprecated; use 'names' instead.
1161,1163d1107
< Warning message:
< In structure(res$obj, .Names = c("build", "swap")) :
< Replacing special names '.Names' is deprecated; use 'names' instead.
1211,1213d1154
< Warning message:
< In structure(res$obj, .Names = c("build", "swap")) :
< Replacing special names '.Names' is deprecated; use 'names' instead.
1225,1227d1165
< Warning message:
< In structure(res$obj, .Names = c("build", "swap")) :
< Replacing special names '.Names' is deprecated; use 'names' instead.
1239,1241d1176
< Warning message:
< In structure(res$obj, .Names = c("build", "swap")) :
< Replacing special names '.Names' is deprecated; use 'names' instead.
1253,1255d1187
< Warning message:
< In structure(res$obj, .Names = c("build", "swap")) :
< Replacing special names '.Names' is deprecated; use 'names' instead.
1267,1269d1198
< Warning message:
< In structure(res$obj, .Names = c("build", "swap")) :
< Replacing special names '.Names' is deprecated; use 'names' instead.
1281,1283d1209
< Warning message:
< In structure(res$obj, .Names = c("build", "swap")) :
< Replacing special names '.Names' is deprecated; use 'names' instead.
1302,1304d1227
< Warning message:
< In structure(res$obj, .Names = c("build", "swap")) :
< Replacing special names '.Names' is deprecated; use 'names' instead.
1331,1333d1253
< Warning message:
< In structure(res$obj, .Names = c("build", "swap")) :
< Replacing special names '.Names' is deprecated; use 'names' instead.
1342,1344d1261
< Warning message:
< In structure(res$obj, .Names = c("build", "swap")) :
< Replacing special names '.Names' is deprecated; use 'names' instead.
1353,1355d1269
< Warning message:
< In structure(res$obj, .Names = c("build", "swap")) :
< Replacing special names '.Names' is deprecated; use 'names' instead.
1364,1366d1277
< Warning message:
< In structure(res$obj, .Names = c("build", "swap")) :
< Replacing special names '.Names' is deprecated; use 'names' instead.
1376,1378d1286
< Warning message:
< In structure(res$obj, .Names = c("build", "swap")) :
< Replacing special names '.Names' is deprecated; use 'names' instead.
1388,1390d1295
< Warning message:
< In structure(res$obj, .Names = c("build", "swap")) :
< Replacing special names '.Names' is deprecated; use 'names' instead.
1422,1424d1326
< Warning message:
< In structure(res$obj, .Names = c("build", "swap")) :
< Replacing special names '.Names' is deprecated; use 'names' instead.
1447,1449d1348
< Warning message:
< In structure(res$obj, .Names = c("build", "swap")) :
< Replacing special names '.Names' is deprecated; use 'names' instead.
1459,1461d1357
< Warning message:
< In structure(res$obj, .Names = c("build", "swap")) :
< Replacing special names '.Names' is deprecated; use 'names' instead.
1471,1473d1366
< Warning message:
< In structure(res$obj, .Names = c("build", "swap")) :
< Replacing special names '.Names' is deprecated; use 'names' instead.
1483,1485d1375
< Warning message:
< In structure(res$obj, .Names = c("build", "swap")) :
< Replacing special names '.Names' is deprecated; use 'names' instead.
1495,1497d1384
< Warning message:
< In structure(res$obj, .Names = c("build", "swap")) :
< Replacing special names '.Names' is deprecated; use 'names' instead.
1507,1509d1393
< Warning message:
< In structure(res$obj, .Names = c("build", "swap")) :
< Replacing special names '.Names' is deprecated; use 'names' instead.
1611,1613d1494
< Warning message:
< In structure(res$obj, .Names = c("build", "swap")) :
< Replacing special names '.Names' is deprecated; use 'names' instead.
1644,1646d1524
< Warning message:
< In structure(res$obj, .Names = c("build", "swap")) :
< Replacing special names '.Names' is deprecated; use 'names' instead.
1664,1666d1541
< Warning message:
< In structure(res$obj, .Names = c("build", "swap")) :
< Replacing special names '.Names' is deprecated; use 'names' instead.
1684,1686d1558
< Warning message:
< In structure(res$obj, .Names = c("build", "swap")) :
< Replacing special names '.Names' is deprecated; use 'names' instead.
1704,1706d1575
< Warning message:
< In structure(res$obj, .Names = c("build", "swap")) :
< Replacing special names '.Names' is deprecated; use 'names' instead.
1724,1726d1592
< Warning message:
< In structure(res$obj, .Names = c("build", "swap")) :
< Replacing special names '.Names' is deprecated; use 'names' instead.
1744,1746d1609
< Warning message:
< In structure(res$obj, .Names = c("build", "swap")) :
< Replacing special names '.Names' is deprecated; use 'names' instead.
1863,1865d1725
< Warning message:
< In structure(res$obj, .Names = c("build", "swap")) :
< Replacing special names '.Names' is deprecated; use 'names' instead.
Running ‘silhouette-default.R’
Comparing ‘silhouette-default.Rout’ to ‘silhouette-default.Rout.save’ ...
554d553
< There were 39 warnings (use warnings() to see them)
615,627d613
< Warning messages:
< 1: In structure(res$obj, .Names = c("build", "swap")) :
< Replacing special names '.Names' is deprecated; use 'names' instead.
< 2: In structure(res$obj, .Names = c("build", "swap")) :
< Replacing special names '.Names' is deprecated; use 'names' instead.
< 3: In structure(res$obj, .Names = c("build", "swap")) :
< Replacing special names '.Names' is deprecated; use 'names' instead.
< 4: In structure(res$obj, .Names = c("build", "swap")) :
< Replacing special names '.Names' is deprecated; use 'names' instead.
< 5: In structure(res$obj, .Names = c("build", "swap")) :
< Replacing special names '.Names' is deprecated; use 'names' instead.
< 6: In structure(res$obj, .Names = c("build", "swap")) :
< Replacing special names '.Names' is deprecated; use 'names' instead.
Running ‘sweep-ex.R’
- checking PDF version of manual ... [7s/26s] OK
- checking HTML version of manual ... [8s/23s] OK
- checking for non-standard things in the check directory ... OK
- checking for detritus in the temp directory ... OK
- DONE
Status: 2 NOTEs