• using R Under development (unstable) (2026-04-22 r89943)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7)     GNU Fortran (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7)
• running under: Fedora Linux 42 (Workstation Edition)
• using session charset: UTF-8 * current time: 2026-04-22 16:12:16 UTC
• using option ‘--no-stop-on-test-error’
• checking for file ‘clustTMB/DESCRIPTION’ ... OK
• this is package ‘clustTMB’ version ‘0.1.0’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘clustTMB’ can be installed ... [8m/22m] OK See the install log for details.
• used C++ compiler: ‘g++ (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7)’
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [6s/23s] OK
• checking whether the package can be loaded with stated dependencies ... [5s/18s] OK
• checking whether the package can be unloaded cleanly ... [5s/23s] OK
• checking whether the namespace can be loaded with stated dependencies ... [5s/19s] OK
• checking whether the namespace can be unloaded cleanly ... [6s/19s] OK
• checking loading without being on the library search path ... [6s/23s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [31s/129s] OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking use of PKG_*FLAGS in Makefiles ... OK
• checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [8s/35s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [0m/90m] ERROR   Running ‘testthat.R’ [0m/90m] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > library(testthat)   > library(clustTMB)   >   > test_check("clustTMB")   Loading required package: mclust   Package 'mclust' version 6.1.2   Type 'citation("mclust")' for citing this R package in publications.   Loading required package: MoEClust      Package 'MoEClust' version 1.6.0.      Type '?MoEClust' to see a brief guide to how to use this R package.   Type 'citation("MoEClust")' for citing the package in publications.   Type 'MoE_news()' to see new features recent changes and bug fixes.      Loading required package: mvnfast   Loading required package: FMsmsnReg   Loading required package: TMB   using C++ compiler: 'g++ (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7)'   make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/clustTMB.Rcheck/tests/testthat'   g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I"/data/gannet/ripley/R/test-dev/TMB/include" -I"/data/gannet/ripley/R/test-dev/RcppEigen/include" -DTMB_SAFEBOUNDS -DTMB_EIGEN_DISABLE_WARNINGS -DLIB_UNLOAD=R_unload_simple -DTMB_LIB_INIT=R_init_simple -DCPPAD_FRAMEWORK -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c ref/simple.cpp -o ref/simple.o   g++ -std=gnu++20 -shared -L/usr/local/lib64 -o ref/simple.so ref/simple.o   make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/clustTMB.Rcheck/tests/testthat'   make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/clustTMB.Rcheck/tests/testthat'   make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/clustTMB.Rcheck/tests/testthat'
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [1m/64m] ERROR Error(s) in re-building vignettes: --- re-building ‘CovarianceStructure.Rmd’ using rmarkdown --- finished re-building ‘CovarianceStructure.Rmd’ Warning: elapsed-time limit of 1 hours reached for sub-process --- re-building ‘SpatialExMeuseData.Rmd’ using rmarkdown SUMMARY: processing the following file failed:   ‘SpatialExMeuseData.Rmd’ Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... [7s/23s] OK
• checking HTML version of manual ... [3s/22s] OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 2 ERRORs