• using R Under development (unstable) (2025-11-14 r89021)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)     GNU Fortran (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)
• running under: Fedora Linux 42 (Workstation Edition)
• using session charset: UTF-8
• using option ‘--no-stop-on-test-error’
• checking for file ‘clinUtils/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘clinUtils’ version ‘0.2.1’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘clinUtils’ can be installed ... [11s/23s] OK See the install log for details.
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [16s/33s] OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [8s/17s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [26s/76s] ERROR   Running ‘testthat.R’ [25s/75s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > library(testthat)   > library(clinUtils)   >   > test_check("clinUtils")   Saving _problems/test_getClinDT-139.R   Saving _problems/test_getClinDT-176.R   [ FAIL 2 | WARN 1 | SKIP 2 | PASS 305 ]      ══ Skipped tests (2) ═══════════════════════════════════════════════════════════   • On CRAN (2): 'test_getClinDT.R:838:7', 'test_getClinDT.R:855:7'      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test_getClinDT.R:139:7'): Invisible columns are not shown in the DataTables output ──   Error in `expect(cDefs[[which(cDefsNonVisible)]]$targets, 1)`: `ok` must be `TRUE` or `FALSE`, not the number 1.   Backtrace:       ▆    1. └─testthat::expect(ok = cDefs[[which(cDefsNonVisible)]]$targets) at test_getClinDT.R:139:7    2. └─testthat:::check_bool(ok)    3. └─testthat:::stop_input_type(...)    4. └─rlang::abort(message, ..., call = call, arg = arg)   ── Error ('test_getClinDT.R:176:7'): Percentages are correctly formatted ───────   Error in `expect(cDefs[[which(cDefsFmtPercentage)]]$targets, 1)`: `ok` must be `TRUE` or `FALSE`, not the number 1.   Backtrace:       ▆    1. └─testthat::expect(ok = cDefs[[which(cDefsFmtPercentage)]]$targets) at test_getClinDT.R:176:7    2. └─testthat:::check_bool(ok)    3. └─testthat:::stop_input_type(...)    4. └─rlang::abort(message, ..., call = call, arg = arg)      [ FAIL 2 | WARN 1 | SKIP 2 | PASS 305 ]   Error:   ! Test failures.   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [53s/132s] OK
• checking PDF version of manual ... [9s/23s] OK
• checking HTML version of manual ... [7s/15s] OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 1 ERROR