* installing *source* package ‘clarabel’ ...
** this is package ‘clarabel’ version ‘0.11.1’
** package ‘clarabel’ successfully unpacked and MD5 sums checked
** using staged installation
Using cargo 1.87.0 (99624be96 2025-05-06) (Fedora 1.87.0-2.fc42)
Using rustc 1.87.0 (17067e9ac 2025-05-09) (Fedora 1.87.0-2.fc42)
** libs
using C compiler: ‘gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/clarabel/src'
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c init.c -o init.o
# In some environments, ~/.cargo/bin might not be included in PATH, so we need
# to set it here to ensure cargo can be invoked. It is appended to PATH and
# therefore is only used if cargo is absent from the user's PATH.
export PATH="/data/gannet/ripley/bin:/data/gannet/ripley/bin2:/usr/local/bin:/usr/local/texbin:/usr/sbin:/usr/lib64/qt-3.3/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/lib64/openmpi/bin:/data/gannet/ripley/.cargo/bin" && \
echo "Rust version:" `rustc --version` && \
echo "Cargo version:" `cargo --version` && \
if [ "" != "wasm32-unknown-emscripten" ]; then \
if [ "yes" = "yes" ]; then \
mkdir -p /data/gannet/ripley/R/packages/tests-devel/clarabel/src/rust/.cargo; \
cp ./rust/cargo_vendor_config.toml /data/gannet/ripley/R/packages/tests-devel/clarabel/src/rust/.cargo/config.toml; \
/usr/bin/gtar --extract --xz -f ./rust/vendor.tar.xz -C ./rust ; \
export CARGO_HOME=/data/gannet/ripley/R/packages/tests-devel/clarabel/src/rust/.cargo; \
export R_HOME=/data/gannet/ripley/R/R-devel; \
export PATH="/data/gannet/ripley/bin:/data/gannet/ripley/bin2:/usr/local/bin:/usr/local/texbin:/usr/sbin:/usr/lib64/qt-3.3/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/lib64/openmpi/bin:/data/gannet/ripley/.cargo/bin"; \
export RUSTFLAGS="-C linker=gcc"; \
cargo build -j 2 --lib --manifest-path=./rust/Cargo.toml --target-dir /data/gannet/ripley/R/packages/tests-devel/clarabel/src/rust/target --release --offline; \
else \
cargo build -j 2 --lib --manifest-path=./rust/Cargo.toml --target-dir /data/gannet/ripley/R/packages/tests-devel/clarabel/src/rust/target; \
fi \
else \
export CC="gcc" && \
export R_HOME="/data/gannet/ripley/R/R-devel" && \
export CFLAGS="-g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes " && \
export LDFLAGS="-L/usr/local/lib64" && \
export CARGO_PROFILE_DEV_PANIC="abort" && \
export CARGO_PROFILE_RELEASE_PANIC="abort" && \
cargo +nightly build -j 2 --lib --manifest-path=./rust/Cargo.toml --target-dir /data/gannet/ripley/R/packages/tests-devel/clarabel/src/rust/target -Zbuild-std=panic_abort,std; \
fi
Rust version: rustc 1.87.0 (17067e9ac 2025-05-09) (Fedora 1.87.0-2.fc42)
Cargo version: cargo 1.87.0 (99624be96 2025-05-06) (Fedora 1.87.0-2.fc42)
warning: a `-j` argument was passed to Cargo but Cargo is also configured with an external jobserver in its environment, ignoring the `-j` parameter
Compiling proc-macro2 v1.0.101
Compiling unicode-ident v1.0.19
Compiling quote v1.0.40
Compiling syn v2.0.106
Compiling syn v1.0.109
Compiling autocfg v1.5.0
Compiling num-traits v0.2.19
Compiling fnv v1.0.7
Compiling strsim v0.10.0
Compiling libc v0.2.176
Compiling ident_case v1.0.1
Compiling darling_core v0.14.4
Compiling serde_core v1.0.226
Compiling darling_macro v0.14.4
Compiling memchr v2.7.5
Compiling r-src v0.2.2 (https://github.com/bnaras/r-src?rev=03e133e1947cf96829f28bd3ebbd906391523dc2#03e133e1)
Compiling darling v0.14.4
Compiling find-msvc-tools v0.1.2
Compiling shlex v1.3.0
Compiling serde v1.0.226
Compiling cc v1.2.38
Compiling derive_builder_core v0.11.2
Compiling num-complex v0.4.6
Compiling serde_derive v1.0.226
Compiling serde_json v1.0.145
Compiling rustversion v1.0.22
Compiling thiserror v1.0.69
Compiling derive_builder_macro v0.11.2
Compiling savvy v0.8.13
Compiling aho-corasick v1.1.3
Compiling lapack-sys v0.14.0
Compiling blas-sys v0.7.1
Compiling thiserror-impl v1.0.69
Compiling savvy-bindgen v0.8.13
Compiling ryu v1.0.20
Compiling regex-syntax v0.8.6
Compiling either v1.15.0
Compiling hashbrown v0.16.0
Compiling clarabel v0.11.1
Compiling itoa v1.0.15
Compiling equivalent v1.0.2
Compiling once_cell v1.21.3
Compiling enum_dispatch v0.3.13
Compiling regex-automata v0.4.10
Compiling indexmap v2.11.4
Compiling itertools v0.11.0
Compiling savvy-macro v0.8.13
Compiling serde-big-array v0.5.1
Compiling blas v0.22.0
Compiling lapack v0.19.0
Compiling derive_builder v0.11.2
Compiling lapack-src v0.11.0
Compiling blas-src v0.11.1
Compiling amd v0.2.2
Compiling savvy-ffi v0.8.13
Compiling lazy_static v1.5.0
Compiling cfg-if v1.0.3
Compiling regex v1.11.2
Compiling clarabel v0.11.1 (/data/gannet/ripley/R/packages/tests-devel/clarabel/src/rust)
Finished `release` profile [optimized] target(s) in 3m 24s
rm -Rf /data/gannet/ripley/R/packages/tests-devel/clarabel/src/rust/.cargo
rm -Rf ./rust/vendor
rm -Rf /data/gannet/ripley/R/packages/tests-devel/clarabel/src/rust/target/release/build
gcc -shared -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -fpic -L/usr/local/lib64 -o clarabel.so init.o -L/data/gannet/ripley/R/packages/tests-devel/clarabel/src/rust/target/release -lclarabel -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath
rm -f /data/gannet/ripley/R/packages/tests-devel/clarabel/src/rust/target/release/libclarabel.a
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/clarabel/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/clarabel/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/clarabel/src'
installing to /data/gannet/ripley/R/packages/tests-devel/clarabel.Rcheck/00LOCK-clarabel/00new/clarabel/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (clarabel)