* installing *source* package ‘clarabel’ ... ** package ‘clarabel’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-13 (GCC) 13.2.0’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/clarabel/src' rm -Rf clarabel.so ./rust/target/release/libclarabel.a entrypoint.o gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c entrypoint.c -o entrypoint.o # vendoring (Note: to avoid NOTE of "Found the following hidden files and # directories", .cargo needs to be created here) if [ "yes" = "yes" ]; then \ mkdir -p /data/gannet/ripley/R/packages/tests-devel/clarabel/src/rust/.cargo; \ cp ./rust/cargo_vendor_config.toml /data/gannet/ripley/R/packages/tests-devel/clarabel/src/rust/.cargo/config.toml; \ /usr/bin/gtar --extract --xz -f ./rust/vendor.tar.xz -C ./rust ; \ export CARGO_HOME=/data/gannet/ripley/R/packages/tests-devel/clarabel/src/rust/.cargo; \ export PATH="/data/gannet/ripley/bin:/usr/local/bin:/usr/local/texbin:/usr/sbin:.:/data/gannet/ripley/bin:/usr/local/texbin:/usr/local/bin:/usr/sbin:/usr/lib64/qt-3.3/bin:/usr/share/Modules/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/usr/lib64/openmpi/bin:/usr/lib64/openmpi/bin:/data/gannet/ripley/.cargo/bin"; \ cargo build --lib --release --offline --manifest-path=./rust/Cargo.toml --target-dir ./rust/target; \ fi && \ if [ "yes" = "no" ]; then \ cargo build --lib --verbose --release --manifest-path=./rust/Cargo.toml --target-dir ./rust/target; \ fi Compiling proc-macro2 v1.0.60 Compiling quote v1.0.28 Compiling unicode-ident v1.0.9 Compiling syn v1.0.109 Compiling autocfg v1.1.0 Compiling fnv v1.0.7 Compiling strsim v0.10.0 Compiling libc v0.2.146 Compiling ident_case v1.0.1 Compiling libR-sys v0.4.0 Compiling r-src v0.1.0 Compiling memchr v2.5.0 Compiling thiserror v1.0.40 Compiling paste v1.0.12 Compiling extendr-engine v0.4.0 Compiling lazy_static v1.4.0 Compiling once_cell v1.18.0 Compiling extendr-api v0.4.0 Compiling cfg-if v1.0.0 Compiling regex-syntax v0.7.2 Compiling num-traits v0.2.15 Compiling syn v2.0.18 Compiling aho-corasick v1.0.2 Compiling blas-sys v0.7.1 Compiling lapack-sys v0.14.0 Compiling lapack-src v0.9.0 Compiling blas-src v0.9.0 Compiling num-complex v0.4.3 Compiling amd v0.2.2 Compiling blas v0.22.0 Compiling lapack v0.19.0 Compiling regex v1.8.4 Compiling thiserror-impl v1.0.40 Compiling darling_core v0.14.4 Compiling enum_dispatch v0.3.11 Compiling extendr-macros v0.4.0 Compiling darling_macro v0.14.4 Compiling darling v0.14.4 Compiling derive_builder_core v0.11.2 Compiling derive_builder_macro v0.11.2 Compiling derive_builder v0.11.2 Compiling clarabel v0.5.1 Compiling clarabel v0.5.1 (/data/gannet/ripley/R/packages/tests-devel/clarabel/src/rust) Finished release [optimized] target(s) in 1m 23s rm -Rf /data/gannet/ripley/R/packages/tests-devel/clarabel/src/rust/.cargo rm -Rf ./rust/target/release/build gcc-13 -shared -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -fpic -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o clarabel.so entrypoint.o -L./rust/target/release -lclarabel -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/clarabel/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/clarabel/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/clarabel/src' installing to /data/gannet/ripley/R/packages/tests-devel/clarabel.Rcheck/00LOCK-clarabel/00new/clarabel/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (clarabel)