- using R Under development (unstable) (2025-11-27 r89071)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)
GNU Fortran (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)
- running under: Fedora Linux 42 (Workstation Edition)
- using session charset: UTF-8
- using option ‘--no-stop-on-test-error’
- checking for file ‘citation/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘citation’ version ‘0.8.2’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘citation’ can be installed ... [4s/12s] OK
See the install log for details.
- checking package directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [6s/14s] OK
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking examples ... OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... ERROR
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
>
> test_check("citation")
Loading required package: citation
cff-version: 1.2.0
message: If you use this software, please cite it using the metadata from this file.
type: software
title: 'yaml: Methods to Convert R Data to YAML and Back'
version: 2.3.11
date-released: '2025-11-06'
abstract: Implements the 'libyaml' 'YAML' 1.1 parser and emitter (<https://pyyaml.org/wiki/LibYAML>)
for R.
authors:
- family-names: Garbett
given-names: Shawn
email: shawn.garbett@vumc.org
orcid: 0000-0003-4079-5621
- family-names: Stephens
given-names: Jeremy
- family-names: Simonov
given-names: Kirill
- family-names: Xie
given-names: Yihui
orcid: 0000-0003-0645-5666
- family-names: Dong
given-names: Zhuoer
- family-names: Wickham
given-names: Hadley
orcid: 0000-0003-4757-117X
- family-names: Horner
given-names: Jeffrey
- name: reikoch
- family-names: Beasley
given-names: Will
orcid: 0000-0002-5613-5006
- family-names: O'Connor
given-names: Brendan
- family-names: Quinn
given-names: Michael
- family-names: Gao
given-names: Charlie
- family-names: Warnes
given-names:
- Gregory
- R.
- family-names: Kamvar
given-names:
- Zhian
- N.
license: BSD-3-Clause
repository-code: https://github.com/vubiostat/r-yaml/
Saving _problems/test-r2cff-20.R
[ FAIL 1 | WARN 0 | SKIP 1 | PASS 8 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• !file.exists(citationFile) is TRUE (1): 'test-cff2r.R:3:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-r2cff.R:20:3'): r2cff generally works ────────────────────────
Expected `r2cff(yamlFile)` to throw a error.
[ FAIL 1 | WARN 0 | SKIP 1 | PASS 8 ]
Error:
! Test failures.
Execution halted
- checking PDF version of manual ... [7s/15s] OK
- checking HTML version of manual ... OK
- checking for non-standard things in the check directory ... OK
- checking for detritus in the temp directory ... OK
- DONE
Status: 1 ERROR