* installing *source* package ‘cit’ ... ** package ‘cit’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (GCC) 14.2.0’ using C++ compiler: ‘g++-14 (GCC) 14.2.0’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/cit/src' gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 `gsl-config --cflags` -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c cit_init.c -o cit_init.o g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c citconlog2.cpp -o citconlog2.o g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c citconlog2cvr.cpp -o citconlog2cvr.o g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c citconlog3_perm.cpp -o citconlog3_perm.o g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c citconlog3cvr_perm.cpp -o citconlog3cvr_perm.o g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c logisticfunc.cpp -o logisticfunc.o citconlog3_perm.cpp: In function 'void citconlog3p(double*, double*, double*, int&, int&, double*, double*, double*, double*, int&, int&, int&, int*)': citconlog3_perm.cpp:50:22: warning: variable 'cc' set but not used [-Wunused-but-set-variable] 50 | bool aa, bb, cc, converged, permute; | ^~ citconlog3cvr_perm.cpp: In function 'void citconlog3pcvr(double*, double*, double*, double*, int&, int&, int&, double*, double*, double*, double*, int&, int&, int&, int*)': citconlog3cvr_perm.cpp:49:22: warning: variable 'cc' set but not used [-Wunused-but-set-variable] 49 | bool aa, bb, cc, converged, permute; | ^~ citconlog3_perm.cpp:453:17: warning: 'pvalind' may be used uninitialized [-Wmaybe-uninitialized] 453 | if( pvp > pvalind ) npos++; | ^~ citconlog3_perm.cpp:48:41: note: 'pvalind' was declared here 48 | double rss2, rss3, rss5, F, pv, pvalind, pvp, tmp, rhs; | ^~~~~~~ citconlog3cvr_perm.cpp:484:17: warning: 'pvalind' may be used uninitialized [-Wmaybe-uninitialized] 484 | if( pvp > pvalind ) npos++; | ^~ citconlog3cvr_perm.cpp:47:41: note: 'pvalind' was declared here 47 | double rss2, rss3, rss5, F, pv, pvalind, pvp, tmp, rhs; | ^~~~~~~ g++-14 -std=gnu++17 -shared -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o cit.so cit_init.o citconlog2.o citconlog2cvr.o citconlog3_perm.o citconlog3cvr_perm.o logisticfunc.o -lgsl -lgslcblas -lm make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/cit/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/cit/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/cit/src' installing to /data/gannet/ripley/R/packages/tests-devel/cit.Rcheck/00LOCK-cit/00new/cit/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cit)