* installing *source* package ‘catmodeling’ ...
** this is package ‘catmodeling’ version ‘0.0.1’
** package ‘catmodeling’ successfully unpacked and MD5 sums checked
** using staged installation
Using cargo 1.96.1 (356927216 2026-06-26) (Fedora 1.96.1-1.fc44)
Using rustc 1.96.1 (31fca3adb 2026-06-26) (Fedora 1.96.1-1.fc44)
Building for CRAN.
Writing `src/Makevars`.
`tools/config.R` has finished.
** libs
using C compiler: ‘gcc (GCC) 16.1.1 20260515 (Red Hat 16.1.1-2)’
make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-devel/catmodeling/src'
gcc -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c entrypoint.c -o entrypoint.o
if [ -d ./vendor ]; then \
echo "=== Using offline vendor directory ==="; \
mkdir -p /data/localhost/ripley/R/packages/tests-devel/catmodeling/src/.cargo && \
cp rust/vendor-config.toml /data/localhost/ripley/R/packages/tests-devel/catmodeling/src/.cargo/config.toml; \
elif [ -f ./rust/vendor.tar.xz ]; then \
echo "=== Using offline vendor tarball ==="; \
tar xf rust/vendor.tar.xz && \
mkdir -p /data/localhost/ripley/R/packages/tests-devel/catmodeling/src/.cargo && \
cp rust/vendor-config.toml /data/localhost/ripley/R/packages/tests-devel/catmodeling/src/.cargo/config.toml; \
fi
=== Using offline vendor tarball ===
export CARGO_HOME=/data/localhost/ripley/R/packages/tests-devel/catmodeling/src/.cargo && \
export PATH="/data/localhost/ripley/bin:/usr/local/bin:/usr/local/texbin:/usr/sbin:/usr/lib64/qt-3.3/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/data/localhost/ripley/.composer/vendor/bin:/usr/lib64/openmpi/bin:/data/localhost/ripley/.cargo/bin" && \
RUSTFLAGS=" --print=native-static-libs" cargo build -j 2 --offline --lib --release --manifest-path=./rust/Cargo.toml --target-dir ./rust/target
warning: a `-j` argument was passed to Cargo but Cargo is also configured with an external jobserver in its environment, ignoring the `-j` parameter
Compiling proc-macro2 v1.0.106
Compiling unicode-ident v1.0.24
Compiling quote v1.0.46
Compiling extendr-ffi v0.9.0
Compiling syn v2.0.118
Compiling paste v1.0.15
Compiling extendr-api v0.9.0
Compiling lazy_static v1.5.0
Compiling once_cell v1.21.4
Compiling extendr-macros v0.9.0
Compiling readonly v0.2.13
Compiling catmodeling v0.1.0 (/data/localhost/ripley/R/packages/tests-devel/catmodeling/src/rust)
note: link against the following native artifacts when linking against this static library. The order and any duplication can be significant on some platforms
note: native-static-libs: -lR -lgcc_s -lutil -lrt -lpthread -lm -ldl -lc
Finished `release` profile [optimized] target(s) in 43.97s
export CARGO_HOME=/data/localhost/ripley/R/packages/tests-devel/catmodeling/src/.cargo && \
export PATH="/data/localhost/ripley/bin:/usr/local/bin:/usr/local/texbin:/usr/sbin:/usr/lib64/qt-3.3/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/data/localhost/ripley/.composer/vendor/bin:/usr/lib64/openmpi/bin:/data/localhost/ripley/.cargo/bin" && \
cargo run -j 2 --offline --bin document --manifest-path=./rust/Cargo.toml --target-dir ./rust/target
warning: a `-j` argument was passed to Cargo but Cargo is also configured with an external jobserver in its environment, ignoring the `-j` parameter
Compiling proc-macro2 v1.0.106
Compiling unicode-ident v1.0.24
Compiling quote v1.0.46
Compiling extendr-ffi v0.9.0
Compiling syn v2.0.118
Compiling paste v1.0.15
Compiling extendr-api v0.9.0
Compiling lazy_static v1.5.0
Compiling extendr-macros v0.9.0
Compiling readonly v0.2.13
Compiling once_cell v1.21.4
Compiling catmodeling v0.1.0 (/data/localhost/ripley/R/packages/tests-devel/catmodeling/src/rust)
error: linking with `cc` failed: exit status: 1
|
= note: "cc" "-m64" "/data/localhost/ripley/R/packages/tests-devel/catmodeling/src/./rust/target/debug/deps/rustcejhFM1/symbols.o" "<17 object files omitted>" "-Wl,--as-needed" "-Wl,-Bstatic" "/data/localhost/ripley/R/packages/tests-devel/catmodeling/src/rust/target/debug/deps/{libcatmodeling-adde25e8318ed1c7,libextendr_api-e2a0fde37c6cf2a6,libonce_cell-9013c66d83b49beb,libextendr_ffi-bb951f29dd26c404}.rlib" "<sysroot>/lib/rustlib/x86_64-unknown-linux-gnu/lib/{libstd-*,libpanic_unwind-*,libobject-*,libmemchr-*,libaddr2line-*,libgimli-*,libcfg_if-*,librustc_demangle-*,libstd_detect-*,libhashbrown-*,librustc_std_workspace_alloc-*,libminiz_oxide-*,libadler2-*,libunwind-*,liblibc-*,librustc_std_workspace_core-*,liballoc-*,libcore-*,libcompiler_builtins-*}.rlib" "-Wl,-Bdynamic" "-lR" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc" "-L" "/data/localhost/ripley/R/packages/tests-devel/catmodeling/src/./rust/target/debug/deps/rustcejhFM1/raw-dylibs" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-L" "/data/localhost/ripley/R/R-devel/lib" "-L" "<sysroot>/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-o" "/data/localhost/ripley/R/packages/tests-devel/catmodeling/src/./rust/target/debug/deps/document-59ca16eb0768eb5e" "-Wl,--gc-sections" "-pie" "-Wl,-z,relro,-z,now" "-nodefaultlibs"
= note: some arguments are omitted. use `--verbose` to show all linker arguments
= note: /usr/bin/ld.bfd: cannot find -lR: No such file or directory
collect2: error: ld returned 1 exit status
error: could not compile `catmodeling` (bin "document") due to 1 previous error
make[1]: *** [Makevars:28: rust/target/release/libcatmodeling.a] Error 101
make[1]: Target 'all' not remade because of errors.
make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-devel/catmodeling/src'
ERROR: compilation failed for package ‘catmodeling’
* removing ‘/data/localhost/ripley/R/packages/tests-devel/catmodeling.Rcheck/catmodeling’