Install log for 'capybara'

* installing *source* package ‘capybara’ ...
** this is package ‘capybara’ version ‘1.0.1’
** package ‘capybara’ successfully unpacked and MD5 sums checked
** using staged installation
Not using optimization flags
Number of available cores: 12
creating src/Makevars
** libs
using C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/capybara/src'
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I'/data/gannet/ripley/R/test-dev/cpp11armadillo/include' -I/usr/local/include   -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c 01_linear_algebra.cpp -o 01_linear_algebra.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I'/data/gannet/ripley/R/test-dev/cpp11armadillo/include' -I/usr/local/include   -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c 02_center_variables.cpp -o 02_center_variables.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I'/data/gannet/ripley/R/test-dev/cpp11armadillo/include' -I/usr/local/include   -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c 03_lm_fit.cpp -o 03_lm_fit.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I'/data/gannet/ripley/R/test-dev/cpp11armadillo/include' -I/usr/local/include   -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c 04_glm_fit.cpp -o 04_glm_fit.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I'/data/gannet/ripley/R/test-dev/cpp11armadillo/include' -I/usr/local/include   -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c 05_glm_offset_fit.cpp -o 05_glm_offset_fit.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I'/data/gannet/ripley/R/test-dev/cpp11armadillo/include' -I/usr/local/include   -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c 06_get_alpha.cpp -o 06_get_alpha.o
04_glm_fit.cpp: In function ‘cpp11::list feglm_fit_(const cpp11::doubles&, const cpp11::doubles&, const cpp11::doubles&, cpp11::doubles_matrix<>&, const cpp11::doubles&, const double&, const std::string&, const cpp11::list&, const cpp11::list&)’:
04_glm_fit.cpp:344:5: warning: ‘imp_crit’ may be used uninitialized [-Wmaybe-uninitialized]
  344 |     if (!imp_crit) {
      |     ^~
04_glm_fit.cpp:284:28: note: ‘imp_crit’ was declared here
  284 |   bool dev_crit, val_crit, imp_crit, conv = false;
      |                            ^~~~~~~~
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I'/data/gannet/ripley/R/test-dev/cpp11armadillo/include' -I/usr/local/include   -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c 07_group_sums.cpp -o 07_group_sums.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I'/data/gannet/ripley/R/test-dev/cpp11armadillo/include' -I/usr/local/include   -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c cpp11.cpp -o cpp11.o
g++ -std=gnu++17 -shared -L/usr/local/lib64 -o capybara.so 01_linear_algebra.o 02_center_variables.o 03_lm_fit.o 04_glm_fit.o 05_glm_offset_fit.o 06_get_alpha.o 07_group_sums.o cpp11.o -fopenmp -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/capybara/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/capybara/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/capybara/src'
installing to /data/gannet/ripley/R/packages/tests-devel/capybara.Rcheck/00LOCK-capybara/00new/capybara/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (capybara)