* installing *source* package ‘capybara’ ...
** this is package ‘capybara’ version ‘1.8.0’
** package ‘capybara’ successfully unpacked and MD5 sums checked
** using staged installation
- [V] SSE4.2 support detected
==========================================================================
Capybara configuration summary

  C++ Compiler:           g++
  C++ Standard:           CXX20
  OpenMP Support:         yes
  OpenMP Threads:         12
  SIMD Support:           SSE4.2
  BLAS:                   -L/data/gannet/ripley/R/R-devel/lib -lRblas
  LAPACK:                 -llapack
  High-Performance Mode:  no
  Optimization Flags:     

For faster computation
 
 Enable high-performance optimizations run:
 export CAPYBARA_OPTIMIZATIONS=yes
 
 Change thread count run:
 export CAPYBARA_NCORES=<number>
 
 Then reinstall the package
==========================================================================
** libs
using C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/capybara/src'
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I'/data/gannet/ripley/R/test-dev/cpp11armadillo/include' -I/usr/local/include   -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c capybara.cpp -o capybara.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I'/data/gannet/ripley/R/test-dev/cpp11armadillo/include' -I/usr/local/include   -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c cpp11.cpp -o cpp11.o
In file included from capybara.cpp:104:
06_glm.h: In function ‘capybara::InferenceGLM capybara::feglm_fit(arma::vec&, arma::vec&, const arma::vec&, arma::mat&, const arma::vec&, const double&, Family, const arma::field<arma::field<arma::Col<long long unsigned int> > >&, const CapybaraParameters&, GlmWorkspace*)’:
06_glm.h:299:5: warning: ‘imp_crit’ may be used uninitialized [-Wmaybe-uninitialized]
  299 |     if (!imp_crit) {
      |     ^~
06_glm.h:123:28: note: ‘imp_crit’ was declared here
  123 |   bool dev_crit, val_crit, imp_crit, conv = false;
      |                            ^~~~~~~~
g++ -std=gnu++17 -shared -L/usr/local/lib64 -o capybara.so capybara.o cpp11.o -fopenmp -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/capybara/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/capybara/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/capybara/src'
installing to /data/gannet/ripley/R/packages/tests-devel/capybara.Rcheck/00LOCK-capybara/00new/capybara/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (capybara)