* installing *source* package ‘c212’ ...
** this is package ‘c212’ version ‘1.0.1’
** package ‘c212’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/c212/src'
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c c2121a.cpp -o c2121a.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c c2121a_poisson_mc_hier2_lev0.cpp -o c2121a_poisson_mc_hier2_lev0.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c c2121a_poisson_mc_hier2_lev1.cpp -o c2121a_poisson_mc_hier2_lev1.o
In file included from c2121a_poisson_mc_hier2_lev1.cpp:15:
c2121a_poisson_mc_hier2_lev0.h:114:30: warning: ‘virtual SEXPREC* c2121a_poisson_mc_hier2_lev0::getL2Samples(double****&)’ was hidden [-Woverloaded-virtual=]
114 | virtual SEXP getL2Samples(double**** &data);
| ^~~~~~~~~~~~
In file included from c2121a_poisson_mc_hier2_lev1.cpp:16:
c2121a_poisson_mc_hier2_lev1.h:53:30: note: by ‘virtual SEXPREC* c2121a_poisson_mc_hier2_lev1::getL2Samples(double***&)’
53 | virtual SEXP getL2Samples(double*** &data);
| ^~~~~~~~~~~~
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c c2121a_poisson_mc_hier3_lev0.cpp -o c2121a_poisson_mc_hier3_lev0.o
In file included from c2121a_poisson_mc_hier3_lev0.cpp:14:
c2121a_poisson_mc_hier2_lev0.h:52:30: warning: ‘virtual void c2121a_poisson_mc_hier2_lev0::init(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’ was hidden [-Woverloaded-virtual=]
52 | virtual void init(SEXP sChains, SEXP sBurnin, SEXP sIter, SEXP sSim_Type,
| ^~~~
In file included from c2121a_poisson_mc_hier3_lev0.cpp:15:
c2121a_poisson_mc_hier3_lev0.h:52:30: note: by ‘virtual void c2121a_poisson_mc_hier3_lev0::init(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’
52 | virtual void init(SEXP sChains, SEXP sBurnin, SEXP sIter, SEXP sSim_Type,
| ^~~~
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c c2121a_poisson_mc_hier3_lev1.cpp -o c2121a_poisson_mc_hier3_lev1.o
In file included from c2121a_poisson_mc_hier3_lev1.cpp:15:
c2121a_poisson_mc_hier2_lev0.h:52:30: warning: ‘virtual void c2121a_poisson_mc_hier2_lev0::init(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’ was hidden [-Woverloaded-virtual=]
52 | virtual void init(SEXP sChains, SEXP sBurnin, SEXP sIter, SEXP sSim_Type,
| ^~~~
In file included from c2121a_poisson_mc_hier3_lev1.cpp:16:
c2121a_poisson_mc_hier3_lev0.h:52:30: note: by ‘virtual void c2121a_poisson_mc_hier3_lev0::init(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’
52 | virtual void init(SEXP sChains, SEXP sBurnin, SEXP sIter, SEXP sSim_Type,
| ^~~~
c2121a_poisson_mc_hier3_lev0.h:93:30: warning: ‘virtual SEXPREC* c2121a_poisson_mc_hier3_lev0::getL3Samples(double***&)’ was hidden [-Woverloaded-virtual=]
93 | virtual SEXP getL3Samples(double*** &data);
| ^~~~~~~~~~~~
In file included from c2121a_poisson_mc_hier3_lev1.cpp:17:
c2121a_poisson_mc_hier3_lev2.h:53:30: note: by ‘virtual SEXPREC* c2121a_poisson_mc_hier3_lev2::getL3Samples(double**&)’
53 | virtual SEXP getL3Samples(double** &data);
| ^~~~~~~~~~~~
c2121a_poisson_mc_hier2_lev0.h:114:30: warning: ‘virtual SEXPREC* c2121a_poisson_mc_hier2_lev0::getL2Samples(double****&)’ was hidden [-Woverloaded-virtual=]
114 | virtual SEXP getL2Samples(double**** &data);
| ^~~~~~~~~~~~
In file included from c2121a_poisson_mc_hier3_lev1.cpp:18:
c2121a_poisson_mc_hier3_lev1.h:58:30: note: by ‘virtual SEXPREC* c2121a_poisson_mc_hier3_lev1::getL2Samples(double***&)’
58 | virtual SEXP getL2Samples(double*** &data);
| ^~~~~~~~~~~~
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c c2121a_poisson_mc_hier3_lev2.cpp -o c2121a_poisson_mc_hier3_lev2.o
In file included from c2121a_poisson_mc_hier3_lev2.cpp:15:
c2121a_poisson_mc_hier2_lev0.h:52:30: warning: ‘virtual void c2121a_poisson_mc_hier2_lev0::init(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’ was hidden [-Woverloaded-virtual=]
52 | virtual void init(SEXP sChains, SEXP sBurnin, SEXP sIter, SEXP sSim_Type,
| ^~~~
In file included from c2121a_poisson_mc_hier3_lev2.cpp:16:
c2121a_poisson_mc_hier3_lev0.h:52:30: note: by ‘virtual void c2121a_poisson_mc_hier3_lev0::init(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’
52 | virtual void init(SEXP sChains, SEXP sBurnin, SEXP sIter, SEXP sSim_Type,
| ^~~~
c2121a_poisson_mc_hier3_lev0.h:93:30: warning: ‘virtual SEXPREC* c2121a_poisson_mc_hier3_lev0::getL3Samples(double***&)’ was hidden [-Woverloaded-virtual=]
93 | virtual SEXP getL3Samples(double*** &data);
| ^~~~~~~~~~~~
In file included from c2121a_poisson_mc_hier3_lev2.cpp:17:
c2121a_poisson_mc_hier3_lev2.h:53:30: note: by ‘virtual SEXPREC* c2121a_poisson_mc_hier3_lev2::getL3Samples(double**&)’
53 | virtual SEXP getL3Samples(double** &data);
| ^~~~~~~~~~~~
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c c212BB.cpp -o c212BB.o
In file included from c212BB.cpp:15:
c2121a.h:60:30: warning: ‘virtual void c2121a::init(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’ was hidden [-Woverloaded-virtual=]
60 | virtual void init(SEXP Chains, SEXP pBurnin, SEXP pIter, SEXP pNumBodySys,
| ^~~~
In file included from c212BB.cpp:16:
c212BB.h:129:22: note: by ‘void c212BB::init(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’
129 | void init(SEXP pChains, SEXP pBurnin, SEXP pIter, SEXP pNumBodySys,
| ^~~~
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c c212BB_poisson_mc_hier2_lev0.cpp -o c212BB_poisson_mc_hier2_lev0.o
In file included from c212BB_poisson_mc_hier2_lev0.cpp:16:
c2121a_poisson_mc_hier2_lev0.h:92:30: warning: ‘virtual void c2121a_poisson_mc_hier2_lev0::initL2Params(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’ was hidden [-Woverloaded-virtual=]
92 | virtual void initL2Params(SEXP pmu_gamma_0, SEXP ptau2_gamma_0,
| ^~~~~~~~~~~~
In file included from c212BB_poisson_mc_hier2_lev0.cpp:17:
c212BB_poisson_mc_hier2_lev0.h:73:30: note: by ‘virtual void c212BB_poisson_mc_hier2_lev0::initL2Params(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’
73 | virtual void initL2Params(SEXP pmu_gamma_0,
| ^~~~~~~~~~~~
c2121a_poisson_mc_hier2_lev0.h:88:30: warning: ‘virtual void c2121a_poisson_mc_hier2_lev0::initL2Variables(SEXP, SEXP, SEXP, SEXP)’ was hidden [-Woverloaded-virtual=]
88 | virtual void initL2Variables(SEXP pmu_gamma, SEXP pmu_theta,
| ^~~~~~~~~~~~~~~
c212BB_poisson_mc_hier2_lev0.h:79:30: note: by ‘virtual void c212BB_poisson_mc_hier2_lev0::initL2Variables(SEXP, SEXP, SEXP, SEXP, SEXP)’
79 | virtual void initL2Variables(SEXP pmu_gamma, SEXP pmu_theta,
| ^~~~~~~~~~~~~~~
c2121a_poisson_mc_hier2_lev0.h:77:30: warning: ‘virtual void c2121a_poisson_mc_hier2_lev0::initGlobalSimParams(SEXP, SEXP, SEXP)’ was hidden [-Woverloaded-virtual=]
77 | virtual void initGlobalSimParams(SEXP sSim_Type, SEXP sGlobal_Sim_Param, SEXP sGlobal_Sim_Param_cntrl);
| ^~~~~~~~~~~~~~~~~~~
c212BB_poisson_mc_hier2_lev0.h:69:30: note: by ‘virtual void c212BB_poisson_mc_hier2_lev0::initGlobalSimParams(SEXP, SEXP)’
69 | virtual void initGlobalSimParams(SEXP sim_type, SEXP sim_params);
| ^~~~~~~~~~~~~~~~~~~
c2121a_poisson_mc_hier2_lev0.h:52:30: warning: ‘virtual void c2121a_poisson_mc_hier2_lev0::init(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’ was hidden [-Woverloaded-virtual=]
52 | virtual void init(SEXP sChains, SEXP sBurnin, SEXP sIter, SEXP sSim_Type,
| ^~~~
c212BB_poisson_mc_hier2_lev0.h:48:30: note: by ‘virtual void c212BB_poisson_mc_hier2_lev0::init(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’
48 | virtual void init(SEXP sChains, SEXP sBurnin, SEXP sIter, SEXP sSim_Type,
| ^~~~
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c c212BB_poisson_mc_hier2_lev1.cpp -o c212BB_poisson_mc_hier2_lev1.o
In file included from c212BB_poisson_mc_hier2_lev1.cpp:16:
c2121a_poisson_mc_hier2_lev0.h:92:30: warning: ‘virtual void c2121a_poisson_mc_hier2_lev0::initL2Params(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’ was hidden [-Woverloaded-virtual=]
92 | virtual void initL2Params(SEXP pmu_gamma_0, SEXP ptau2_gamma_0,
| ^~~~~~~~~~~~
In file included from c212BB_poisson_mc_hier2_lev1.cpp:17:
c212BB_poisson_mc_hier2_lev0.h:73:30: note: by ‘virtual void c212BB_poisson_mc_hier2_lev0::initL2Params(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’
73 | virtual void initL2Params(SEXP pmu_gamma_0,
| ^~~~~~~~~~~~
c2121a_poisson_mc_hier2_lev0.h:88:30: warning: ‘virtual void c2121a_poisson_mc_hier2_lev0::initL2Variables(SEXP, SEXP, SEXP, SEXP)’ was hidden [-Woverloaded-virtual=]
88 | virtual void initL2Variables(SEXP pmu_gamma, SEXP pmu_theta,
| ^~~~~~~~~~~~~~~
c212BB_poisson_mc_hier2_lev0.h:79:30: note: by ‘virtual void c212BB_poisson_mc_hier2_lev0::initL2Variables(SEXP, SEXP, SEXP, SEXP, SEXP)’
79 | virtual void initL2Variables(SEXP pmu_gamma, SEXP pmu_theta,
| ^~~~~~~~~~~~~~~
c2121a_poisson_mc_hier2_lev0.h:77:30: warning: ‘virtual void c2121a_poisson_mc_hier2_lev0::initGlobalSimParams(SEXP, SEXP, SEXP)’ was hidden [-Woverloaded-virtual=]
77 | virtual void initGlobalSimParams(SEXP sSim_Type, SEXP sGlobal_Sim_Param, SEXP sGlobal_Sim_Param_cntrl);
| ^~~~~~~~~~~~~~~~~~~
c212BB_poisson_mc_hier2_lev0.h:69:30: note: by ‘virtual void c212BB_poisson_mc_hier2_lev0::initGlobalSimParams(SEXP, SEXP)’
69 | virtual void initGlobalSimParams(SEXP sim_type, SEXP sim_params);
| ^~~~~~~~~~~~~~~~~~~
c2121a_poisson_mc_hier2_lev0.h:52:30: warning: ‘virtual void c2121a_poisson_mc_hier2_lev0::init(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’ was hidden [-Woverloaded-virtual=]
52 | virtual void init(SEXP sChains, SEXP sBurnin, SEXP sIter, SEXP sSim_Type,
| ^~~~
c212BB_poisson_mc_hier2_lev0.h:48:30: note: by ‘virtual void c212BB_poisson_mc_hier2_lev0::init(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’
48 | virtual void init(SEXP sChains, SEXP sBurnin, SEXP sIter, SEXP sSim_Type,
| ^~~~
c2121a_poisson_mc_hier2_lev0.h:114:30: warning: ‘virtual SEXPREC* c2121a_poisson_mc_hier2_lev0::getL2Samples(double****&)’ was hidden [-Woverloaded-virtual=]
114 | virtual SEXP getL2Samples(double**** &data);
| ^~~~~~~~~~~~
In file included from c212BB_poisson_mc_hier2_lev1.cpp:18:
c212BB_poisson_mc_hier2_lev1.h:61:30: note: by ‘virtual SEXPREC* c212BB_poisson_mc_hier2_lev1::getL2Samples(double***&)’
61 | virtual SEXP getL2Samples(double*** &data);
| ^~~~~~~~~~~~
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c c212BB_poisson_mc_hier3_lev0.cpp -o c212BB_poisson_mc_hier3_lev0.o
In file included from c212BB_poisson_mc_hier3_lev0.cpp:16:
c2121a_poisson_mc_hier2_lev0.h:52:30: warning: ‘virtual void c2121a_poisson_mc_hier2_lev0::init(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’ was hidden [-Woverloaded-virtual=]
52 | virtual void init(SEXP sChains, SEXP sBurnin, SEXP sIter, SEXP sSim_Type,
| ^~~~
In file included from c212BB_poisson_mc_hier3_lev0.cpp:17:
c2121a_poisson_mc_hier3_lev0.h:52:30: note: by ‘virtual void c2121a_poisson_mc_hier3_lev0::init(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’
52 | virtual void init(SEXP sChains, SEXP sBurnin, SEXP sIter, SEXP sSim_Type,
| ^~~~
c2121a_poisson_mc_hier3_lev0.h:84:30: warning: ‘virtual void c2121a_poisson_mc_hier3_lev0::initL3Variables(SEXP, SEXP, SEXP, SEXP)’ was hidden [-Woverloaded-virtual=]
84 | virtual void initL3Variables(SEXP pmu_gamma_0,
| ^~~~~~~~~~~~~~~
In file included from c212BB_poisson_mc_hier3_lev0.cpp:18:
c212BB_poisson_mc_hier3_lev0.h:100:30: note: by ‘virtual void c212BB_poisson_mc_hier3_lev0::initL3Variables(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’
100 | virtual void initL3Variables(SEXP pmu_gamma_0, SEXP ptau2_gamma_0,
| ^~~~~~~~~~~~~~~
c2121a_poisson_mc_hier3_lev0.h:77:30: warning: ‘virtual void c2121a_poisson_mc_hier3_lev0::initL3Params(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’ was hidden [-Woverloaded-virtual=]
77 | virtual void initL3Params(SEXP pmu_gamma_0_0, SEXP ptau2_gamma_0_0,
| ^~~~~~~~~~~~
c212BB_poisson_mc_hier3_lev0.h:92:30: note: by ‘virtual void c212BB_poisson_mc_hier3_lev0::initL3Params(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’
92 | virtual void initL3Params(SEXP pmu_gamma_0_0, SEXP ptau2_gamma_0_0,
| ^~~~~~~~~~~~
c2121a_poisson_mc_hier2_lev0.h:88:30: warning: ‘virtual void c2121a_poisson_mc_hier2_lev0::initL2Variables(SEXP, SEXP, SEXP, SEXP)’ was hidden [-Woverloaded-virtual=]
88 | virtual void initL2Variables(SEXP pmu_gamma, SEXP pmu_theta,
| ^~~~~~~~~~~~~~~
c212BB_poisson_mc_hier3_lev0.h:108:30: note: by ‘virtual void c212BB_poisson_mc_hier3_lev0::initL2Variables(SEXP, SEXP, SEXP, SEXP, SEXP)’
108 | virtual void initL2Variables(SEXP pmu_gamma, SEXP pmu_theta, SEXP psigma2_gamma, SEXP psigma2_theta, SEXP pPi);
| ^~~~~~~~~~~~~~~
c2121a_poisson_mc_hier2_lev0.h:77:30: warning: ‘virtual void c2121a_poisson_mc_hier2_lev0::initGlobalSimParams(SEXP, SEXP, SEXP)’ was hidden [-Woverloaded-virtual=]
77 | virtual void initGlobalSimParams(SEXP sSim_Type, SEXP sGlobal_Sim_Param, SEXP sGlobal_Sim_Param_cntrl);
| ^~~~~~~~~~~~~~~~~~~
c212BB_poisson_mc_hier3_lev0.h:83:30: note: by ‘virtual void c212BB_poisson_mc_hier3_lev0::initGlobalSimParams(SEXP, SEXP)’
83 | virtual void initGlobalSimParams(SEXP sim_type, SEXP sim_params);
| ^~~~~~~~~~~~~~~~~~~
c2121a_poisson_mc_hier3_lev0.h:52:30: warning: ‘virtual void c2121a_poisson_mc_hier3_lev0::init(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’ was hidden [-Woverloaded-virtual=]
52 | virtual void init(SEXP sChains, SEXP sBurnin, SEXP sIter, SEXP sSim_Type,
| ^~~~
c212BB_poisson_mc_hier3_lev0.h:57:30: note: by ‘virtual void c212BB_poisson_mc_hier3_lev0::init(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’
57 | virtual void init(SEXP sChains, SEXP sBurnin, SEXP sIter, SEXP sSim_Type,
| ^~~~
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c c212BB_poisson_mc_hier3_lev1.cpp -o c212BB_poisson_mc_hier3_lev1.o
In file included from c212BB_poisson_mc_hier3_lev1.cpp:16:
c2121a_poisson_mc_hier2_lev0.h:52:30: warning: ‘virtual void c2121a_poisson_mc_hier2_lev0::init(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’ was hidden [-Woverloaded-virtual=]
52 | virtual void init(SEXP sChains, SEXP sBurnin, SEXP sIter, SEXP sSim_Type,
| ^~~~
In file included from c212BB_poisson_mc_hier3_lev1.cpp:17:
c2121a_poisson_mc_hier3_lev0.h:52:30: note: by ‘virtual void c2121a_poisson_mc_hier3_lev0::init(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’
52 | virtual void init(SEXP sChains, SEXP sBurnin, SEXP sIter, SEXP sSim_Type,
| ^~~~
c2121a_poisson_mc_hier3_lev0.h:84:30: warning: ‘virtual void c2121a_poisson_mc_hier3_lev0::initL3Variables(SEXP, SEXP, SEXP, SEXP)’ was hidden [-Woverloaded-virtual=]
84 | virtual void initL3Variables(SEXP pmu_gamma_0,
| ^~~~~~~~~~~~~~~
In file included from c212BB_poisson_mc_hier3_lev1.cpp:18:
c212BB_poisson_mc_hier3_lev0.h:100:30: note: by ‘virtual void c212BB_poisson_mc_hier3_lev0::initL3Variables(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’
100 | virtual void initL3Variables(SEXP pmu_gamma_0, SEXP ptau2_gamma_0,
| ^~~~~~~~~~~~~~~
c2121a_poisson_mc_hier3_lev0.h:77:30: warning: ‘virtual void c2121a_poisson_mc_hier3_lev0::initL3Params(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’ was hidden [-Woverloaded-virtual=]
77 | virtual void initL3Params(SEXP pmu_gamma_0_0, SEXP ptau2_gamma_0_0,
| ^~~~~~~~~~~~
c212BB_poisson_mc_hier3_lev0.h:92:30: note: by ‘virtual void c212BB_poisson_mc_hier3_lev0::initL3Params(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’
92 | virtual void initL3Params(SEXP pmu_gamma_0_0, SEXP ptau2_gamma_0_0,
| ^~~~~~~~~~~~
c2121a_poisson_mc_hier2_lev0.h:88:30: warning: ‘virtual void c2121a_poisson_mc_hier2_lev0::initL2Variables(SEXP, SEXP, SEXP, SEXP)’ was hidden [-Woverloaded-virtual=]
88 | virtual void initL2Variables(SEXP pmu_gamma, SEXP pmu_theta,
| ^~~~~~~~~~~~~~~
c212BB_poisson_mc_hier3_lev0.h:108:30: note: by ‘virtual void c212BB_poisson_mc_hier3_lev0::initL2Variables(SEXP, SEXP, SEXP, SEXP, SEXP)’
108 | virtual void initL2Variables(SEXP pmu_gamma, SEXP pmu_theta, SEXP psigma2_gamma, SEXP psigma2_theta, SEXP pPi);
| ^~~~~~~~~~~~~~~
c2121a_poisson_mc_hier2_lev0.h:77:30: warning: ‘virtual void c2121a_poisson_mc_hier2_lev0::initGlobalSimParams(SEXP, SEXP, SEXP)’ was hidden [-Woverloaded-virtual=]
77 | virtual void initGlobalSimParams(SEXP sSim_Type, SEXP sGlobal_Sim_Param, SEXP sGlobal_Sim_Param_cntrl);
| ^~~~~~~~~~~~~~~~~~~
c212BB_poisson_mc_hier3_lev0.h:83:30: note: by ‘virtual void c212BB_poisson_mc_hier3_lev0::initGlobalSimParams(SEXP, SEXP)’
83 | virtual void initGlobalSimParams(SEXP sim_type, SEXP sim_params);
| ^~~~~~~~~~~~~~~~~~~
c2121a_poisson_mc_hier3_lev0.h:52:30: warning: ‘virtual void c2121a_poisson_mc_hier3_lev0::init(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’ was hidden [-Woverloaded-virtual=]
52 | virtual void init(SEXP sChains, SEXP sBurnin, SEXP sIter, SEXP sSim_Type,
| ^~~~
c212BB_poisson_mc_hier3_lev0.h:57:30: note: by ‘virtual void c212BB_poisson_mc_hier3_lev0::init(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’
57 | virtual void init(SEXP sChains, SEXP sBurnin, SEXP sIter, SEXP sSim_Type,
| ^~~~
c212BB_poisson_mc_hier3_lev0.h:113:30: warning: ‘virtual SEXPREC* c212BB_poisson_mc_hier3_lev0::getL3Accept(int**&)’ was hidden [-Woverloaded-virtual=]
113 | virtual SEXP getL3Accept(int** &data);
| ^~~~~~~~~~~
In file included from c212BB_poisson_mc_hier3_lev1.cpp:19:
c212BB_poisson_mc_hier3_lev2.h:72:30: note: by ‘virtual SEXPREC* c212BB_poisson_mc_hier3_lev2::getL3Accept(int*&)’
72 | virtual SEXP getL3Accept(int* &data);
| ^~~~~~~~~~~
c212BB_poisson_mc_hier3_lev0.h:44:32: warning: ‘virtual double c212BB_poisson_mc_hier3_lev0::log_f_beta_pi(int, int, double)’ was hidden [-Woverloaded-virtual=]
44 | virtual double log_f_beta_pi(int c, int l, double alpha);
| ^~~~~~~~~~~~~
c212BB_poisson_mc_hier3_lev2.h:52:32: note: by ‘virtual double c212BB_poisson_mc_hier3_lev2::log_f_beta_pi(int, double)’
52 | virtual double log_f_beta_pi(int c, double alpha);
| ^~~~~~~~~~~~~
c2121a_poisson_mc_hier3_lev0.h:93:30: warning: ‘virtual SEXPREC* c2121a_poisson_mc_hier3_lev0::getL3Samples(double***&)’ was hidden [-Woverloaded-virtual=]
93 | virtual SEXP getL3Samples(double*** &data);
| ^~~~~~~~~~~~
c212BB_poisson_mc_hier3_lev2.h:71:30: note: by ‘virtual SEXPREC* c212BB_poisson_mc_hier3_lev2::getL3Samples(double**&)’
71 | virtual SEXP getL3Samples(double** &data);
| ^~~~~~~~~~~~
c2121a_poisson_mc_hier2_lev0.h:114:30: warning: ‘virtual SEXPREC* c2121a_poisson_mc_hier2_lev0::getL2Samples(double****&)’ was hidden [-Woverloaded-virtual=]
114 | virtual SEXP getL2Samples(double**** &data);
| ^~~~~~~~~~~~
In file included from c212BB_poisson_mc_hier3_lev1.cpp:20:
c212BB_poisson_mc_hier3_lev1.h:74:30: note: by ‘virtual SEXPREC* c212BB_poisson_mc_hier3_lev1::getL2Samples(double***&)’
74 | virtual SEXP getL2Samples(double*** &data);
| ^~~~~~~~~~~~
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c c212BB_poisson_mc_hier3_lev2.cpp -o c212BB_poisson_mc_hier3_lev2.o
In file included from c212BB_poisson_mc_hier3_lev2.cpp:16:
c2121a_poisson_mc_hier2_lev0.h:52:30: warning: ‘virtual void c2121a_poisson_mc_hier2_lev0::init(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’ was hidden [-Woverloaded-virtual=]
52 | virtual void init(SEXP sChains, SEXP sBurnin, SEXP sIter, SEXP sSim_Type,
| ^~~~
In file included from c212BB_poisson_mc_hier3_lev2.cpp:17:
c2121a_poisson_mc_hier3_lev0.h:52:30: note: by ‘virtual void c2121a_poisson_mc_hier3_lev0::init(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’
52 | virtual void init(SEXP sChains, SEXP sBurnin, SEXP sIter, SEXP sSim_Type,
| ^~~~
c2121a_poisson_mc_hier3_lev0.h:84:30: warning: ‘virtual void c2121a_poisson_mc_hier3_lev0::initL3Variables(SEXP, SEXP, SEXP, SEXP)’ was hidden [-Woverloaded-virtual=]
84 | virtual void initL3Variables(SEXP pmu_gamma_0,
| ^~~~~~~~~~~~~~~
In file included from c212BB_poisson_mc_hier3_lev2.cpp:18:
c212BB_poisson_mc_hier3_lev0.h:100:30: note: by ‘virtual void c212BB_poisson_mc_hier3_lev0::initL3Variables(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’
100 | virtual void initL3Variables(SEXP pmu_gamma_0, SEXP ptau2_gamma_0,
| ^~~~~~~~~~~~~~~
c2121a_poisson_mc_hier3_lev0.h:77:30: warning: ‘virtual void c2121a_poisson_mc_hier3_lev0::initL3Params(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’ was hidden [-Woverloaded-virtual=]
77 | virtual void initL3Params(SEXP pmu_gamma_0_0, SEXP ptau2_gamma_0_0,
| ^~~~~~~~~~~~
c212BB_poisson_mc_hier3_lev0.h:92:30: note: by ‘virtual void c212BB_poisson_mc_hier3_lev0::initL3Params(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’
92 | virtual void initL3Params(SEXP pmu_gamma_0_0, SEXP ptau2_gamma_0_0,
| ^~~~~~~~~~~~
c2121a_poisson_mc_hier2_lev0.h:88:30: warning: ‘virtual void c2121a_poisson_mc_hier2_lev0::initL2Variables(SEXP, SEXP, SEXP, SEXP)’ was hidden [-Woverloaded-virtual=]
88 | virtual void initL2Variables(SEXP pmu_gamma, SEXP pmu_theta,
| ^~~~~~~~~~~~~~~
c212BB_poisson_mc_hier3_lev0.h:108:30: note: by ‘virtual void c212BB_poisson_mc_hier3_lev0::initL2Variables(SEXP, SEXP, SEXP, SEXP, SEXP)’
108 | virtual void initL2Variables(SEXP pmu_gamma, SEXP pmu_theta, SEXP psigma2_gamma, SEXP psigma2_theta, SEXP pPi);
| ^~~~~~~~~~~~~~~
c2121a_poisson_mc_hier2_lev0.h:77:30: warning: ‘virtual void c2121a_poisson_mc_hier2_lev0::initGlobalSimParams(SEXP, SEXP, SEXP)’ was hidden [-Woverloaded-virtual=]
77 | virtual void initGlobalSimParams(SEXP sSim_Type, SEXP sGlobal_Sim_Param, SEXP sGlobal_Sim_Param_cntrl);
| ^~~~~~~~~~~~~~~~~~~
c212BB_poisson_mc_hier3_lev0.h:83:30: note: by ‘virtual void c212BB_poisson_mc_hier3_lev0::initGlobalSimParams(SEXP, SEXP)’
83 | virtual void initGlobalSimParams(SEXP sim_type, SEXP sim_params);
| ^~~~~~~~~~~~~~~~~~~
c2121a_poisson_mc_hier3_lev0.h:52:30: warning: ‘virtual void c2121a_poisson_mc_hier3_lev0::init(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’ was hidden [-Woverloaded-virtual=]
52 | virtual void init(SEXP sChains, SEXP sBurnin, SEXP sIter, SEXP sSim_Type,
| ^~~~
c212BB_poisson_mc_hier3_lev0.h:57:30: note: by ‘virtual void c212BB_poisson_mc_hier3_lev0::init(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’
57 | virtual void init(SEXP sChains, SEXP sBurnin, SEXP sIter, SEXP sSim_Type,
| ^~~~
c212BB_poisson_mc_hier3_lev0.h:113:30: warning: ‘virtual SEXPREC* c212BB_poisson_mc_hier3_lev0::getL3Accept(int**&)’ was hidden [-Woverloaded-virtual=]
113 | virtual SEXP getL3Accept(int** &data);
| ^~~~~~~~~~~
In file included from c212BB_poisson_mc_hier3_lev2.cpp:19:
c212BB_poisson_mc_hier3_lev2.h:72:30: note: by ‘virtual SEXPREC* c212BB_poisson_mc_hier3_lev2::getL3Accept(int*&)’
72 | virtual SEXP getL3Accept(int* &data);
| ^~~~~~~~~~~
c212BB_poisson_mc_hier3_lev0.h:44:32: warning: ‘virtual double c212BB_poisson_mc_hier3_lev0::log_f_beta_pi(int, int, double)’ was hidden [-Woverloaded-virtual=]
44 | virtual double log_f_beta_pi(int c, int l, double alpha);
| ^~~~~~~~~~~~~
c212BB_poisson_mc_hier3_lev2.h:52:32: note: by ‘virtual double c212BB_poisson_mc_hier3_lev2::log_f_beta_pi(int, double)’
52 | virtual double log_f_beta_pi(int c, double alpha);
| ^~~~~~~~~~~~~
c2121a_poisson_mc_hier3_lev0.h:93:30: warning: ‘virtual SEXPREC* c2121a_poisson_mc_hier3_lev0::getL3Samples(double***&)’ was hidden [-Woverloaded-virtual=]
93 | virtual SEXP getL3Samples(double*** &data);
| ^~~~~~~~~~~~
c212BB_poisson_mc_hier3_lev2.h:71:30: note: by ‘virtual SEXPREC* c212BB_poisson_mc_hier3_lev2::getL3Samples(double**&)’
71 | virtual SEXP getL3Samples(double** &data);
| ^~~~~~~~~~~~
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c c212_exec.cpp -o c212_exec.o
In file included from c212_exec.cpp:15:
c2121a.h:60:30: warning: ‘virtual void c2121a::init(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’ was hidden [-Woverloaded-virtual=]
60 | virtual void init(SEXP Chains, SEXP pBurnin, SEXP pIter, SEXP pNumBodySys,
| ^~~~
In file included from c212_exec.cpp:16:
c212BB.h:129:22: note: by ‘void c212BB::init(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’
129 | void init(SEXP pChains, SEXP pBurnin, SEXP pIter, SEXP pNumBodySys,
| ^~~~
In file included from c212_exec.cpp:17:
c2121a_poisson_mc_hier2_lev0.h:114:30: warning: ‘virtual SEXPREC* c2121a_poisson_mc_hier2_lev0::getL2Samples(double****&)’ was hidden [-Woverloaded-virtual=]
114 | virtual SEXP getL2Samples(double**** &data);
| ^~~~~~~~~~~~
In file included from c212_exec.cpp:18:
c2121a_poisson_mc_hier2_lev1.h:53:30: note: by ‘virtual SEXPREC* c2121a_poisson_mc_hier2_lev1::getL2Samples(double***&)’
53 | virtual SEXP getL2Samples(double*** &data);
| ^~~~~~~~~~~~
c2121a_poisson_mc_hier2_lev0.h:92:30: warning: ‘virtual void c2121a_poisson_mc_hier2_lev0::initL2Params(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’ was hidden [-Woverloaded-virtual=]
92 | virtual void initL2Params(SEXP pmu_gamma_0, SEXP ptau2_gamma_0,
| ^~~~~~~~~~~~
In file included from c212_exec.cpp:19:
c212BB_poisson_mc_hier2_lev0.h:73:30: note: by ‘virtual void c212BB_poisson_mc_hier2_lev0::initL2Params(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’
73 | virtual void initL2Params(SEXP pmu_gamma_0,
| ^~~~~~~~~~~~
c2121a_poisson_mc_hier2_lev0.h:88:30: warning: ‘virtual void c2121a_poisson_mc_hier2_lev0::initL2Variables(SEXP, SEXP, SEXP, SEXP)’ was hidden [-Woverloaded-virtual=]
88 | virtual void initL2Variables(SEXP pmu_gamma, SEXP pmu_theta,
| ^~~~~~~~~~~~~~~
c212BB_poisson_mc_hier2_lev0.h:79:30: note: by ‘virtual void c212BB_poisson_mc_hier2_lev0::initL2Variables(SEXP, SEXP, SEXP, SEXP, SEXP)’
79 | virtual void initL2Variables(SEXP pmu_gamma, SEXP pmu_theta,
| ^~~~~~~~~~~~~~~
c2121a_poisson_mc_hier2_lev0.h:77:30: warning: ‘virtual void c2121a_poisson_mc_hier2_lev0::initGlobalSimParams(SEXP, SEXP, SEXP)’ was hidden [-Woverloaded-virtual=]
77 | virtual void initGlobalSimParams(SEXP sSim_Type, SEXP sGlobal_Sim_Param, SEXP sGlobal_Sim_Param_cntrl);
| ^~~~~~~~~~~~~~~~~~~
c212BB_poisson_mc_hier2_lev0.h:69:30: note: by ‘virtual void c212BB_poisson_mc_hier2_lev0::initGlobalSimParams(SEXP, SEXP)’
69 | virtual void initGlobalSimParams(SEXP sim_type, SEXP sim_params);
| ^~~~~~~~~~~~~~~~~~~
c2121a_poisson_mc_hier2_lev0.h:52:30: warning: ‘virtual void c2121a_poisson_mc_hier2_lev0::init(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’ was hidden [-Woverloaded-virtual=]
52 | virtual void init(SEXP sChains, SEXP sBurnin, SEXP sIter, SEXP sSim_Type,
| ^~~~
c212BB_poisson_mc_hier2_lev0.h:48:30: note: by ‘virtual void c212BB_poisson_mc_hier2_lev0::init(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’
48 | virtual void init(SEXP sChains, SEXP sBurnin, SEXP sIter, SEXP sSim_Type,
| ^~~~
c2121a_poisson_mc_hier2_lev0.h:114:30: warning: ‘virtual SEXPREC* c2121a_poisson_mc_hier2_lev0::getL2Samples(double****&)’ was hidden [-Woverloaded-virtual=]
114 | virtual SEXP getL2Samples(double**** &data);
| ^~~~~~~~~~~~
In file included from c212_exec.cpp:20:
c212BB_poisson_mc_hier2_lev1.h:61:30: note: by ‘virtual SEXPREC* c212BB_poisson_mc_hier2_lev1::getL2Samples(double***&)’
61 | virtual SEXP getL2Samples(double*** &data);
| ^~~~~~~~~~~~
c2121a_poisson_mc_hier2_lev0.h:52:30: warning: ‘virtual void c2121a_poisson_mc_hier2_lev0::init(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’ was hidden [-Woverloaded-virtual=]
52 | virtual void init(SEXP sChains, SEXP sBurnin, SEXP sIter, SEXP sSim_Type,
| ^~~~
In file included from c212_exec.cpp:21:
c2121a_poisson_mc_hier3_lev0.h:52:30: note: by ‘virtual void c2121a_poisson_mc_hier3_lev0::init(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’
52 | virtual void init(SEXP sChains, SEXP sBurnin, SEXP sIter, SEXP sSim_Type,
| ^~~~
c2121a_poisson_mc_hier3_lev0.h:93:30: warning: ‘virtual SEXPREC* c2121a_poisson_mc_hier3_lev0::getL3Samples(double***&)’ was hidden [-Woverloaded-virtual=]
93 | virtual SEXP getL3Samples(double*** &data);
| ^~~~~~~~~~~~
In file included from c212_exec.cpp:22:
c2121a_poisson_mc_hier3_lev2.h:53:30: note: by ‘virtual SEXPREC* c2121a_poisson_mc_hier3_lev2::getL3Samples(double**&)’
53 | virtual SEXP getL3Samples(double** &data);
| ^~~~~~~~~~~~
c2121a_poisson_mc_hier2_lev0.h:114:30: warning: ‘virtual SEXPREC* c2121a_poisson_mc_hier2_lev0::getL2Samples(double****&)’ was hidden [-Woverloaded-virtual=]
114 | virtual SEXP getL2Samples(double**** &data);
| ^~~~~~~~~~~~
In file included from c212_exec.cpp:23:
c2121a_poisson_mc_hier3_lev1.h:58:30: note: by ‘virtual SEXPREC* c2121a_poisson_mc_hier3_lev1::getL2Samples(double***&)’
58 | virtual SEXP getL2Samples(double*** &data);
| ^~~~~~~~~~~~
c2121a_poisson_mc_hier3_lev0.h:84:30: warning: ‘virtual void c2121a_poisson_mc_hier3_lev0::initL3Variables(SEXP, SEXP, SEXP, SEXP)’ was hidden [-Woverloaded-virtual=]
84 | virtual void initL3Variables(SEXP pmu_gamma_0,
| ^~~~~~~~~~~~~~~
In file included from c212_exec.cpp:24:
c212BB_poisson_mc_hier3_lev0.h:100:30: note: by ‘virtual void c212BB_poisson_mc_hier3_lev0::initL3Variables(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’
100 | virtual void initL3Variables(SEXP pmu_gamma_0, SEXP ptau2_gamma_0,
| ^~~~~~~~~~~~~~~
c2121a_poisson_mc_hier3_lev0.h:77:30: warning: ‘virtual void c2121a_poisson_mc_hier3_lev0::initL3Params(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’ was hidden [-Woverloaded-virtual=]
77 | virtual void initL3Params(SEXP pmu_gamma_0_0, SEXP ptau2_gamma_0_0,
| ^~~~~~~~~~~~
c212BB_poisson_mc_hier3_lev0.h:92:30: note: by ‘virtual void c212BB_poisson_mc_hier3_lev0::initL3Params(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’
92 | virtual void initL3Params(SEXP pmu_gamma_0_0, SEXP ptau2_gamma_0_0,
| ^~~~~~~~~~~~
c2121a_poisson_mc_hier2_lev0.h:88:30: warning: ‘virtual void c2121a_poisson_mc_hier2_lev0::initL2Variables(SEXP, SEXP, SEXP, SEXP)’ was hidden [-Woverloaded-virtual=]
88 | virtual void initL2Variables(SEXP pmu_gamma, SEXP pmu_theta,
| ^~~~~~~~~~~~~~~
c212BB_poisson_mc_hier3_lev0.h:108:30: note: by ‘virtual void c212BB_poisson_mc_hier3_lev0::initL2Variables(SEXP, SEXP, SEXP, SEXP, SEXP)’
108 | virtual void initL2Variables(SEXP pmu_gamma, SEXP pmu_theta, SEXP psigma2_gamma, SEXP psigma2_theta, SEXP pPi);
| ^~~~~~~~~~~~~~~
c2121a_poisson_mc_hier2_lev0.h:77:30: warning: ‘virtual void c2121a_poisson_mc_hier2_lev0::initGlobalSimParams(SEXP, SEXP, SEXP)’ was hidden [-Woverloaded-virtual=]
77 | virtual void initGlobalSimParams(SEXP sSim_Type, SEXP sGlobal_Sim_Param, SEXP sGlobal_Sim_Param_cntrl);
| ^~~~~~~~~~~~~~~~~~~
c212BB_poisson_mc_hier3_lev0.h:83:30: note: by ‘virtual void c212BB_poisson_mc_hier3_lev0::initGlobalSimParams(SEXP, SEXP)’
83 | virtual void initGlobalSimParams(SEXP sim_type, SEXP sim_params);
| ^~~~~~~~~~~~~~~~~~~
c2121a_poisson_mc_hier3_lev0.h:52:30: warning: ‘virtual void c2121a_poisson_mc_hier3_lev0::init(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’ was hidden [-Woverloaded-virtual=]
52 | virtual void init(SEXP sChains, SEXP sBurnin, SEXP sIter, SEXP sSim_Type,
| ^~~~
c212BB_poisson_mc_hier3_lev0.h:57:30: note: by ‘virtual void c212BB_poisson_mc_hier3_lev0::init(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’
57 | virtual void init(SEXP sChains, SEXP sBurnin, SEXP sIter, SEXP sSim_Type,
| ^~~~
c212BB_poisson_mc_hier3_lev0.h:113:30: warning: ‘virtual SEXPREC* c212BB_poisson_mc_hier3_lev0::getL3Accept(int**&)’ was hidden [-Woverloaded-virtual=]
113 | virtual SEXP getL3Accept(int** &data);
| ^~~~~~~~~~~
In file included from c212_exec.cpp:25:
c212BB_poisson_mc_hier3_lev2.h:72:30: note: by ‘virtual SEXPREC* c212BB_poisson_mc_hier3_lev2::getL3Accept(int*&)’
72 | virtual SEXP getL3Accept(int* &data);
| ^~~~~~~~~~~
c212BB_poisson_mc_hier3_lev0.h:44:32: warning: ‘virtual double c212BB_poisson_mc_hier3_lev0::log_f_beta_pi(int, int, double)’ was hidden [-Woverloaded-virtual=]
44 | virtual double log_f_beta_pi(int c, int l, double alpha);
| ^~~~~~~~~~~~~
c212BB_poisson_mc_hier3_lev2.h:52:32: note: by ‘virtual double c212BB_poisson_mc_hier3_lev2::log_f_beta_pi(int, double)’
52 | virtual double log_f_beta_pi(int c, double alpha);
| ^~~~~~~~~~~~~
c2121a_poisson_mc_hier3_lev0.h:93:30: warning: ‘virtual SEXPREC* c2121a_poisson_mc_hier3_lev0::getL3Samples(double***&)’ was hidden [-Woverloaded-virtual=]
93 | virtual SEXP getL3Samples(double*** &data);
| ^~~~~~~~~~~~
c212BB_poisson_mc_hier3_lev2.h:71:30: note: by ‘virtual SEXPREC* c212BB_poisson_mc_hier3_lev2::getL3Samples(double**&)’
71 | virtual SEXP getL3Samples(double** &data);
| ^~~~~~~~~~~~
c2121a_poisson_mc_hier2_lev0.h:114:30: warning: ‘virtual SEXPREC* c2121a_poisson_mc_hier2_lev0::getL2Samples(double****&)’ was hidden [-Woverloaded-virtual=]
114 | virtual SEXP getL2Samples(double**** &data);
| ^~~~~~~~~~~~
In file included from c212_exec.cpp:26:
c212BB_poisson_mc_hier3_lev1.h:74:30: note: by ‘virtual SEXPREC* c212BB_poisson_mc_hier3_lev1::getL2Samples(double***&)’
74 | virtual SEXP getL2Samples(double*** &data);
| ^~~~~~~~~~~~
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c register.cpp -o register.o
g++ -std=gnu++17 -shared -L/usr/local/lib64 -o c212.so c2121a.o c2121a_poisson_mc_hier2_lev0.o c2121a_poisson_mc_hier2_lev1.o c2121a_poisson_mc_hier3_lev0.o c2121a_poisson_mc_hier3_lev1.o c2121a_poisson_mc_hier3_lev2.o c212BB.o c212BB_poisson_mc_hier2_lev0.o c212BB_poisson_mc_hier2_lev1.o c212BB_poisson_mc_hier3_lev0.o c212BB_poisson_mc_hier3_lev1.o c212BB_poisson_mc_hier3_lev2.o c212_exec.o register.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/c212/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/c212/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/c212/src'
installing to /data/gannet/ripley/R/packages/tests-devel/c212.Rcheck/00LOCK-c212/00new/c212/libs
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (c212)