Install log for 'c212'

* installing *source* package ‘c212’ ...
** package ‘c212’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (GCC) 13.2.0’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/c212/src'
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c c2121a.cpp -o c2121a.o
c2121a.cpp:16:20: warning: 'rcsId' defined but not used [-Wunused-variable]
   16 | static const char *rcsId = "$Id: c2121a.cpp,v 1.19 2020/09/04 12:49:13 clb13102 Exp clb13102 $";
      |                    ^~~~~
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c c2121a_poisson_mc_hier2_lev0.cpp -o c2121a_poisson_mc_hier2_lev0.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c c2121a_poisson_mc_hier2_lev1.cpp -o c2121a_poisson_mc_hier2_lev1.o
c2121a_poisson_mc_hier2_lev0.cpp:16:20: warning: 'rcsId' defined but not used [-Wunused-variable]
   16 | static const char *rcsId = "$Id: c2121a_poisson_mc_hier2_lev0.cpp,v 1.7 2018/10/03 15:40:28 clb13102 Exp clb13102 $";
      |                    ^~~~~
c2121a_poisson_mc_hier2_lev1.cpp:18:20: warning: 'rcsId' defined but not used [-Wunused-variable]
   18 | static const char *rcsId = "$Id: c2121a_poisson_mc_hier2_lev1.cpp,v 1.6 2018/10/03 15:40:28 clb13102 Exp clb13102 $";
      |                    ^~~~~
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c c2121a_poisson_mc_hier3_lev0.cpp -o c2121a_poisson_mc_hier3_lev0.o
c2121a_poisson_mc_hier3_lev0.cpp:17:20: warning: 'rcsId' defined but not used [-Wunused-variable]
   17 | static const char *rcsId = "$Id: c2121a_poisson_mc_hier3_lev0.cpp,v 1.17 2018/10/03 15:40:27 clb13102 Exp clb13102 $";
      |                    ^~~~~
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c c2121a_poisson_mc_hier3_lev1.cpp -o c2121a_poisson_mc_hier3_lev1.o
c2121a_poisson_mc_hier3_lev1.cpp:20:20: warning: 'rcsId' defined but not used [-Wunused-variable]
   20 | static const char *rcsId = "$Id: c2121a_poisson_mc_hier3_lev1.cpp,v 1.12 2018/10/03 15:40:27 clb13102 Exp clb13102 $";
      |                    ^~~~~
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c c2121a_poisson_mc_hier3_lev2.cpp -o c2121a_poisson_mc_hier3_lev2.o
c2121a_poisson_mc_hier3_lev2.cpp:19:20: warning: 'rcsId' defined but not used [-Wunused-variable]
   19 | static const char *rcsId = "$Id: c2121a_poisson_mc_hier3_lev2.cpp,v 1.17 2018/10/03 15:40:27 clb13102 Exp clb13102 $";
      |                    ^~~~~
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c c212BB.cpp -o c212BB.o
In file included from c212BB.cpp:13:
c2121a.h:60:30: warning: 'virtual void c2121a::init(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)' was hidden [-Woverloaded-virtual=]
   60 |                 virtual void init(SEXP Chains, SEXP pBurnin, SEXP pIter, SEXP pNumBodySys,
      |                              ^~~~
In file included from c212BB.cpp:14:
c212BB.h:149:22: note:   by 'c212BB::init'
  149 |                 void init(int pChains, int pBurnin, int pIter, int pNumBodySys,
      |                      ^~~~
c212BB.cpp:18:20: warning: 'rcsId' defined but not used [-Wunused-variable]
   18 | static const char *rcsId = "$Id: c212BB.cpp,v 1.19 2017/03/22 16:12:08 clb13102 Exp clb13102 $";
      |                    ^~~~~
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c c212BB_poisson_mc_hier2_lev0.cpp -o c212BB_poisson_mc_hier2_lev0.o
c212BB_poisson_mc_hier2_lev0.cpp:19:20: warning: 'rcsId' defined but not used [-Wunused-variable]
   19 | static const char *rcsId = "$Id: c212BB_poisson_mc_hier2_lev0.cpp,v 1.9 2018/10/03 15:40:28 clb13102 Exp clb13102 $";
      |                    ^~~~~
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c c212BB_poisson_mc_hier2_lev1.cpp -o c212BB_poisson_mc_hier2_lev1.o
c212BB_poisson_mc_hier2_lev1.cpp:20:20: warning: 'rcsId' defined but not used [-Wunused-variable]
   20 | static const char *rcsId = "$Id: c212BB_poisson_mc_hier2_lev1.cpp,v 1.8 2018/10/03 15:40:28 clb13102 Exp clb13102 $";
      |                    ^~~~~
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c c212BB_poisson_mc_hier3_lev0.cpp -o c212BB_poisson_mc_hier3_lev0.o
c212BB_poisson_mc_hier3_lev0.cpp:20:20: warning: 'rcsId' defined but not used [-Wunused-variable]
   20 | static const char *rcsId = "$Id: c212BB_poisson_mc_hier3_lev0.cpp,v 1.17 2018/10/03 15:40:27 clb13102 Exp clb13102 $";
      |                    ^~~~~
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c c212BB_poisson_mc_hier3_lev1.cpp -o c212BB_poisson_mc_hier3_lev1.o
c212BB_poisson_mc_hier3_lev1.cpp:22:20: warning: 'rcsId' defined but not used [-Wunused-variable]
   22 | static const char *rcsId = "$Id: c212BB_poisson_mc_hier3_lev1.cpp,v 1.14 2018/10/03 15:40:28 clb13102 Exp clb13102 $";
      |                    ^~~~~
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c c212BB_poisson_mc_hier3_lev2.cpp -o c212BB_poisson_mc_hier3_lev2.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c c212_exec.cpp -o c212_exec.o
c212BB_poisson_mc_hier3_lev2.cpp:21:20: warning: 'rcsId' defined but not used [-Wunused-variable]
   21 | static const char *rcsId = "$Id: c212BB_poisson_mc_hier3_lev2.cpp,v 1.17 2018/10/03 15:40:27 clb13102 Exp clb13102 $";
      |                    ^~~~~
c212_exec.cpp:31:20: warning: 'rcsId' defined but not used [-Wunused-variable]
   31 | static const char *rcsId = "$Id: c212_exec.cpp,v 1.26 2018/09/21 10:30:19 clb13102 Exp clb13102 $";
      |                    ^~~~~
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c register.cpp -o register.o
register.cpp:18:20: warning: 'rcsId' defined but not used [-Wunused-variable]
   18 | static const char *rcsId = "$Id: register.cpp,v 1.2 2017/03/28 15:38:23 clb13102 Exp clb13102 $";
      |                    ^~~~~
g++-13 -std=gnu++17 -shared -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o c212.so c2121a.o c2121a_poisson_mc_hier2_lev0.o c2121a_poisson_mc_hier2_lev1.o c2121a_poisson_mc_hier3_lev0.o c2121a_poisson_mc_hier3_lev1.o c2121a_poisson_mc_hier3_lev2.o c212BB.o c212BB_poisson_mc_hier2_lev0.o c212BB_poisson_mc_hier2_lev1.o c212BB_poisson_mc_hier3_lev0.o c212BB_poisson_mc_hier3_lev1.o c212BB_poisson_mc_hier3_lev2.o c212_exec.o register.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/c212/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/c212/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/c212/src'
installing to /data/gannet/ripley/R/packages/tests-devel/c212.Rcheck/00LOCK-c212/00new/c212/libs
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (c212)