Install log for 'bpvars'

* installing *source* package ‘bpvars’ ...
** this is package ‘bpvars’ version ‘1.0’
** package ‘bpvars’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/bpvars/src'
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/bsvars/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/RcppTN/include' -I/usr/local/include   -fopenmp -DARMA_64BIT_WORD=1 -DARMA_USE_CURRENT -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/bsvars/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/RcppTN/include' -I/usr/local/include   -fopenmp -DARMA_64BIT_WORD=1 -DARMA_USE_CURRENT -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c bvarGroupPANEL.cpp -o bvarGroupPANEL.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/bsvars/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/RcppTN/include' -I/usr/local/include   -fopenmp -DARMA_64BIT_WORD=1 -DARMA_USE_CURRENT -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c bvarGroupPriorPANEL.cpp -o bvarGroupPriorPANEL.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/bsvars/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/RcppTN/include' -I/usr/local/include   -fopenmp -DARMA_64BIT_WORD=1 -DARMA_USE_CURRENT -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c bvarPANEL.cpp -o bvarPANEL.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/bsvars/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/RcppTN/include' -I/usr/local/include   -fopenmp -DARMA_64BIT_WORD=1 -DARMA_USE_CURRENT -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c bvars.cpp -o bvars.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/bsvars/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/RcppTN/include' -I/usr/local/include   -fopenmp -DARMA_64BIT_WORD=1 -DARMA_USE_CURRENT -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c forecast_panel.cpp -o forecast_panel.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/bsvars/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/RcppTN/include' -I/usr/local/include   -fopenmp -DARMA_64BIT_WORD=1 -DARMA_USE_CURRENT -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c forecast_performance.cpp -o forecast_performance.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/bsvars/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/RcppTN/include' -I/usr/local/include   -fopenmp -DARMA_64BIT_WORD=1 -DARMA_USE_CURRENT -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c missing.cpp -o missing.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/bsvars/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/RcppTN/include' -I/usr/local/include   -fopenmp -DARMA_64BIT_WORD=1 -DARMA_USE_CURRENT -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c panel_variance_decompositions.cpp -o panel_variance_decompositions.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/bsvars/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/RcppTN/include' -I/usr/local/include   -fopenmp -DARMA_64BIT_WORD=1 -DARMA_USE_CURRENT -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c rtmvtnorm.cpp -o rtmvtnorm.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/bsvars/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/RcppTN/include' -I/usr/local/include   -fopenmp -DARMA_64BIT_WORD=1 -DARMA_USE_CURRENT -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c sample_mniw.cpp -o sample_mniw.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/bsvars/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/RcppTN/include' -I/usr/local/include   -fopenmp -DARMA_64BIT_WORD=1 -DARMA_USE_CURRENT -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c utils.cpp -o utils.o
sample_mniw.cpp:99:3: warning: multi-line comment [-Wcomment]
   99 | } // END sample_m_bvar\
      |   ^
sample_mniw.cpp: In function ‘double log_kernel_nu_gg(const double&, const arma::cube&, const arma::cube&, const arma::cube&, const double&, const arma::vec&, const int&, const int&, const int&)’:
sample_mniw.cpp:379:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  379 |     for (int i = 0; i < gg.n_elem; i++) {
      |                     ~~^~~~~~~~~~~
sample_mniw.cpp: In function ‘arma::cube sample_Sigma_g(const arma::cube&, const arma::vec&, const double&, const double&, const Rcpp::List&, const int&)’:
sample_mniw.cpp:646:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  646 |     for (int i = 0; i < gg.n_elem; i++) {
      |                     ~~^~~~~~~~~~~
sample_mniw.cpp: In function ‘arma::cube sample_A_g(const arma::cube&, const arma::cube&, const arma::mat&, const arma::vec&, const double&, const double&, const Rcpp::List&, const int&)’:
sample_mniw.cpp:777:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  777 |     for (int i = 0; i < gg.n_elem; i++) {
      |                     ~~^~~~~~~~~~~
missing.cpp: In function ‘arma::mat sample_missing(arma::mat&, arma::mat&, arma::mat&, arma::mat&, arma::mat&, arma::mat&, arma::mat&)’:
missing.cpp:106:13: warning: unused variable ‘K’ [-Wunused-variable]
  106 |   const int K     = A_c.n_rows;
      |             ^
g++ -std=gnu++17 -shared -L/usr/local/lib64 -o bpvars.so RcppExports.o bvarGroupPANEL.o bvarGroupPriorPANEL.o bvarPANEL.o bvars.o forecast_panel.o forecast_performance.o missing.o panel_variance_decompositions.o rtmvtnorm.o sample_mniw.o utils.o -fopenmp -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/bpvars/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/bpvars/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/bpvars/src'
installing to /data/gannet/ripley/R/packages/tests-devel/bpvars.Rcheck/00LOCK-bpvars/00new/bpvars/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (bpvars)