* installing *source* package ‘bipartite’ ...
** package ‘bipartite’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (GCC) 13.2.0’
using C++ compiler: ‘g++-13 (GCC) 13.2.0’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/bipartite/src'
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c bmn5.cc -o bmn5.o
In file included from /usr/include/stdio.h:906,
from /usr/local/gcc13/include/c++/13.2.0/cstdio:42,
from /data/gannet/ripley/R/R-devel/include/R.h:40,
from bmn5.cc:1:
In function 'int fprintf(FILE*, const char*, ...)',
inlined from 'void calcIdiosyncTemp(double**, int**, int*, int*, int, int)' at bmn5.cc:1580:29,
inlined from 'void calcIdiosyncTemp(double**, int**, int*, int*, int, int)' at bmn5.cc:1565:6:
/usr/include/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:890:
/usr/include/bits/stdio2-decl.h: In function 'void calcIdiosyncTemp(double**, int**, int*, int*, int, int)':
/usr/include/bits/stdio2-decl.h:49:12: note: in a call to function 'int __fprintf_chk(FILE*, int, const char*, ...)' declared 'nonnull'
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c identifyModules.cc -o identifyModules.o
In function 'int fprintf(FILE*, const char*, ...)',
inlined from 'double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)' at bmn5.cc:1220:10:
/usr/include/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/usr/include/bits/stdio2-decl.h: In function 'double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)':
/usr/include/bits/stdio2-decl.h:49:12: note: in a call to function 'int __fprintf_chk(FILE*, int, const char*, ...)' declared 'nonnull'
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
In function 'int fprintf(FILE*, const char*, ...)',
inlined from 'double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)' at bmn5.cc:1226:12:
/usr/include/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/usr/include/bits/stdio2-decl.h: In function 'double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)':
/usr/include/bits/stdio2-decl.h:49:12: note: in a call to function 'int __fprintf_chk(FILE*, int, const char*, ...)' declared 'nonnull'
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
In function 'int fprintf(FILE*, const char*, ...)',
inlined from 'double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)' at bmn5.cc:1228:11:
/usr/include/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/usr/include/bits/stdio2-decl.h: In function 'double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)':
/usr/include/bits/stdio2-decl.h:49:12: note: in a call to function 'int __fprintf_chk(FILE*, int, const char*, ...)' declared 'nonnull'
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
In function 'int fprintf(FILE*, const char*, ...)',
inlined from 'double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)' at bmn5.cc:1230:10:
/usr/include/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/usr/include/bits/stdio2-decl.h: In function 'double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)':
/usr/include/bits/stdio2-decl.h:49:12: note: in a call to function 'int __fprintf_chk(FILE*, int, const char*, ...)' declared 'nonnull'
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
In function 'int fprintf(FILE*, const char*, ...)',
inlined from 'double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)' at bmn5.cc:1274:21:
/usr/include/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/usr/include/bits/stdio2-decl.h: In function 'double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)':
/usr/include/bits/stdio2-decl.h:49:12: note: in a call to function 'int __fprintf_chk(FILE*, int, const char*, ...)' declared 'nonnull'
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
In function 'int fprintf(FILE*, const char*, ...)',
inlined from 'double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)' at bmn5.cc:1275:21:
/usr/include/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/usr/include/bits/stdio2-decl.h: In function 'double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)':
/usr/include/bits/stdio2-decl.h:49:12: note: in a call to function 'int __fprintf_chk(FILE*, int, const char*, ...)' declared 'nonnull'
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
In function 'int fprintf(FILE*, const char*, ...)',
inlined from 'double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)' at bmn5.cc:1278:42:
/usr/include/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/usr/include/bits/stdio2-decl.h: In function 'double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)':
/usr/include/bits/stdio2-decl.h:49:12: note: in a call to function 'int __fprintf_chk(FILE*, int, const char*, ...)' declared 'nonnull'
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
In function 'int fprintf(FILE*, const char*, ...)',
inlined from 'double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)' at bmn5.cc:1280:43:
/usr/include/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/usr/include/bits/stdio2-decl.h: In function 'double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)':
/usr/include/bits/stdio2-decl.h:49:12: note: in a call to function 'int __fprintf_chk(FILE*, int, const char*, ...)' declared 'nonnull'
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
In function 'int fprintf(FILE*, const char*, ...)',
inlined from 'double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)' at bmn5.cc:1283:41:
/usr/include/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/usr/include/bits/stdio2-decl.h: In function 'double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)':
/usr/include/bits/stdio2-decl.h:49:12: note: in a call to function 'int __fprintf_chk(FILE*, int, const char*, ...)' declared 'nonnull'
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
In function 'int fprintf(FILE*, const char*, ...)',
inlined from 'double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)' at bmn5.cc:1285:22:
/usr/include/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/usr/include/bits/stdio2-decl.h: In function 'double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)':
/usr/include/bits/stdio2-decl.h:49:12: note: in a call to function 'int __fprintf_chk(FILE*, int, const char*, ...)' declared 'nonnull'
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
In function 'int fprintf(FILE*, const char*, ...)',
inlined from 'double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)' at bmn5.cc:1286:23:
/usr/include/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/usr/include/bits/stdio2-decl.h: In function 'double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)':
/usr/include/bits/stdio2-decl.h:49:12: note: in a call to function 'int __fprintf_chk(FILE*, int, const char*, ...)' declared 'nonnull'
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
In function 'int fprintf(FILE*, const char*, ...)',
inlined from 'double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)' at bmn5.cc:1289:43:
/usr/include/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/usr/include/bits/stdio2-decl.h: In function 'double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)':
/usr/include/bits/stdio2-decl.h:49:12: note: in a call to function 'int __fprintf_chk(FILE*, int, const char*, ...)' declared 'nonnull'
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
In function 'int fprintf(FILE*, const char*, ...)',
inlined from 'double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)' at bmn5.cc:1291:44:
/usr/include/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/usr/include/bits/stdio2-decl.h: In function 'double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)':
/usr/include/bits/stdio2-decl.h:49:12: note: in a call to function 'int __fprintf_chk(FILE*, int, const char*, ...)' declared 'nonnull'
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
In function 'int fprintf(FILE*, const char*, ...)',
inlined from 'double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)' at bmn5.cc:1294:42:
/usr/include/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/usr/include/bits/stdio2-decl.h: In function 'double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)':
/usr/include/bits/stdio2-decl.h:49:12: note: in a call to function 'int __fprintf_chk(FILE*, int, const char*, ...)' declared 'nonnull'
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
In function 'int fprintf(FILE*, const char*, ...)',
inlined from 'double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)' at bmn5.cc:1296:22:
/usr/include/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/usr/include/bits/stdio2-decl.h: In function 'double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)':
/usr/include/bits/stdio2-decl.h:49:12: note: in a call to function 'int __fprintf_chk(FILE*, int, const char*, ...)' declared 'nonnull'
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
In function 'int fprintf(FILE*, const char*, ...)',
inlined from 'double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)' at bmn5.cc:1317:20:
/usr/include/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/usr/include/bits/stdio2-decl.h: In function 'double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)':
/usr/include/bits/stdio2-decl.h:49:12: note: in a call to function 'int __fprintf_chk(FILE*, int, const char*, ...)' declared 'nonnull'
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
In function 'int fprintf(FILE*, const char*, ...)',
inlined from 'double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)' at bmn5.cc:1318:20:
/usr/include/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/usr/include/bits/stdio2-decl.h: In function 'double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)':
/usr/include/bits/stdio2-decl.h:49:12: note: in a call to function 'int __fprintf_chk(FILE*, int, const char*, ...)' declared 'nonnull'
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
In function 'int fprintf(FILE*, const char*, ...)',
inlined from 'double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)' at bmn5.cc:1321:42:
/usr/include/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/usr/include/bits/stdio2-decl.h: In function 'double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)':
/usr/include/bits/stdio2-decl.h:49:12: note: in a call to function 'int __fprintf_chk(FILE*, int, const char*, ...)' declared 'nonnull'
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
In function 'int fprintf(FILE*, const char*, ...)',
inlined from 'double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)' at bmn5.cc:1323:43:
/usr/include/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/usr/include/bits/stdio2-decl.h: In function 'double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)':
/usr/include/bits/stdio2-decl.h:49:12: note: in a call to function 'int __fprintf_chk(FILE*, int, const char*, ...)' declared 'nonnull'
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
In function 'int fprintf(FILE*, const char*, ...)',
inlined from 'double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)' at bmn5.cc:1326:41:
/usr/include/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/usr/include/bits/stdio2-decl.h: In function 'double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)':
/usr/include/bits/stdio2-decl.h:49:12: note: in a call to function 'int __fprintf_chk(FILE*, int, const char*, ...)' declared 'nonnull'
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
In function 'int fprintf(FILE*, const char*, ...)',
inlined from 'double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)' at bmn5.cc:1328:22:
/usr/include/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/usr/include/bits/stdio2-decl.h: In function 'double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)':
/usr/include/bits/stdio2-decl.h:49:12: note: in a call to function 'int __fprintf_chk(FILE*, int, const char*, ...)' declared 'nonnull'
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
In function 'int fprintf(FILE*, const char*, ...)',
inlined from 'double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)' at bmn5.cc:1329:23:
/usr/include/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/usr/include/bits/stdio2-decl.h: In function 'double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)':
/usr/include/bits/stdio2-decl.h:49:12: note: in a call to function 'int __fprintf_chk(FILE*, int, const char*, ...)' declared 'nonnull'
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
In function 'int fprintf(FILE*, const char*, ...)',
inlined from 'double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)' at bmn5.cc:1332:43:
/usr/include/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/usr/include/bits/stdio2-decl.h: In function 'double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)':
/usr/include/bits/stdio2-decl.h:49:12: note: in a call to function 'int __fprintf_chk(FILE*, int, const char*, ...)' declared 'nonnull'
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
In function 'int fprintf(FILE*, const char*, ...)',
inlined from 'double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)' at bmn5.cc:1334:44:
/usr/include/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/usr/include/bits/stdio2-decl.h: In function 'double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)':
/usr/include/bits/stdio2-decl.h:49:12: note: in a call to function 'int __fprintf_chk(FILE*, int, const char*, ...)' declared 'nonnull'
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
In function 'int fprintf(FILE*, const char*, ...)',
inlined from 'double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)' at bmn5.cc:1337:42:
/usr/include/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/usr/include/bits/stdio2-decl.h: In function 'double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)':
/usr/include/bits/stdio2-decl.h:49:12: note: in a call to function 'int __fprintf_chk(FILE*, int, const char*, ...)' declared 'nonnull'
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
In function 'int fprintf(FILE*, const char*, ...)',
inlined from 'double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)' at bmn5.cc:1339:23:
/usr/include/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/usr/include/bits/stdio2-decl.h: In function 'double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)':
/usr/include/bits/stdio2-decl.h:49:12: note: in a call to function 'int __fprintf_chk(FILE*, int, const char*, ...)' declared 'nonnull'
49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
| ^~~~~~~~~~~~~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c init.c -o init.o
g++-13 -std=gnu++17 -shared -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o bipartite.so bmn5.o identifyModules.o init.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/bipartite/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/bipartite/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/bipartite/src'
installing to /data/gannet/ripley/R/packages/tests-devel/bipartite.Rcheck/00LOCK-bipartite/00new/bipartite/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (bipartite)