* installing *source* package ‘bbknnR’ ...
** this is package ‘bbknnR’ version ‘2.0.1’
** package ‘bbknnR’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/bbknnR/src'
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c data_manipulation.cpp -o data_manipulation.o
data_manipulation.cpp: In function ‘Eigen::SparseMatrix<double, 0, int> trim_graph(Eigen::SparseMatrix<double, 0, int>, int)’:
data_manipulation.cpp:30:28: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::Index’ {aka ‘long int’} [-Wsign-compare]
   30 |   for (size_t col = 0; col < cnt.outerSize(); ++col) {
      |                        ~~~~^~~~~~~~~~~~~~~~~
data_manipulation.cpp:37:20: warning: comparison of integer expressions of different signedness: ‘std::priority_queue<double, std::vector<double>, std::greater<double> >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   37 |       if (q.size() < trim) {
      |           ~~~~~~~~~^~~~~~
data_manipulation.cpp:50:28: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::Index’ {aka ‘long int’} [-Wsign-compare]
   50 |   for (size_t col = 0; col < cnt.outerSize(); ++col) {
      |                        ~~~~^~~~~~~~~~~~~~~~~
g++ -std=gnu++17 -shared -L/usr/local/lib64 -o bbknnR.so RcppExports.o data_manipulation.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/bbknnR/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/bbknnR/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/bbknnR/src'
installing to /data/gannet/ripley/R/packages/tests-devel/bbknnR.Rcheck/00LOCK-bbknnR/00new/bbknnR/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (bbknnR)