* installing *source* package ‘bbknnR’ ... ** this is package ‘bbknnR’ version ‘2.0.1’ ** package ‘bbknnR’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/bbknnR/src' g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c data_manipulation.cpp -o data_manipulation.o data_manipulation.cpp: In function ‘Eigen::SparseMatrix<double, 0, int> trim_graph(Eigen::SparseMatrix<double, 0, int>, int)’: data_manipulation.cpp:30:28: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::Index’ {aka ‘long int’} [-Wsign-compare] 30 | for (size_t col = 0; col < cnt.outerSize(); ++col) { | ~~~~^~~~~~~~~~~~~~~~~ data_manipulation.cpp:37:20: warning: comparison of integer expressions of different signedness: ‘std::priority_queue<double, std::vector<double>, std::greater<double> >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 37 | if (q.size() < trim) { | ~~~~~~~~~^~~~~~ data_manipulation.cpp:50:28: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::Index’ {aka ‘long int’} [-Wsign-compare] 50 | for (size_t col = 0; col < cnt.outerSize(); ++col) { | ~~~~^~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -shared -L/usr/local/lib64 -o bbknnR.so RcppExports.o data_manipulation.o make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/bbknnR/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/bbknnR/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/bbknnR/src' installing to /data/gannet/ripley/R/packages/tests-devel/bbknnR.Rcheck/00LOCK-bbknnR/00new/bbknnR/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bbknnR)