Install log for 'bayesPO'

* installing *source* package ‘bayesPO’ ...
** package ‘bayesPO’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (GCC) 14.0.1 20240503 (prerelease)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/bayesPO/src'
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c PolyaGamma.cpp -o PolyaGamma.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c covariates.cpp -o covariates.o
covariates.cpp: In member function 'virtual Eigen::VectorXd retrievCovs_intMatrix::retrieveInt(int)':
covariates.cpp:84:26: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long int'} and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
   84 |   for (R_xlen_t i = 0; i < selInt.size(); ++i)
      |                        ~~^~~~~~~~~~~~~~~
covariates.cpp: In member function 'virtual Eigen::VectorXd retrievCovs_intMatrix::retrieveObs(int)':
covariates.cpp:93:26: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long int'} and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
   93 |   for (R_xlen_t i = 0; i < selObs.size(); ++i)
      |                        ~~^~~~~~~~~~~~~~~
covariates.cpp: In member function 'virtual Eigen::VectorXd retrievCovs_doubleMatrix::retrieveInt(int)':
covariates.cpp:103:26: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long int'} and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  103 |   for (R_xlen_t i = 0; i < selInt.size(); ++i)
      |                        ~~^~~~~~~~~~~~~~~
covariates.cpp: In member function 'virtual Eigen::VectorXd retrievCovs_doubleMatrix::retrieveObs(int)':
covariates.cpp:112:26: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long int'} and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  112 |   for (R_xlen_t i = 0; i < selObs.size(); ++i)
      |                        ~~^~~~~~~~~~~~~~~
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c full_conditionals.cpp -o full_conditionals.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c markovchain.cpp -o markovchain.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c runBayesPO.cpp -o runBayesPO.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c utils.cpp -o utils.o
g++-14 -std=gnu++17 -shared -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o bayesPO.so PolyaGamma.o RcppExports.o covariates.o full_conditionals.o markovchain.o runBayesPO.o utils.o -fopenmp
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/bayesPO/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/bayesPO/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/bayesPO/src'
installing to /data/gannet/ripley/R/packages/tests-devel/bayesPO.Rcheck/00LOCK-bayesPO/00new/bayesPO/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (bayesPO)