* installing *source* package ‘balnet’ ... ** this is package ‘balnet’ version ‘0.0.3’ ** package ‘balnet’ successfully unpacked and MD5 sums checked ** using staged installation ** libs specified C++17 using C++ compiler: ‘g++ (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7)’ using C++17 make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/balnet/src' g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -DEIGEN_PERMANENTLY_DISABLE_STUPID_WARNINGS -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -DEIGEN_PERMANENTLY_DISABLE_STUPID_WARNINGS -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c rcpp_bindings.cpp -o rcpp_bindings.o In file included from rcpp_bindings.cpp:1: ../inst/include/bindings.hpp: In function ‘state_glm_naive_64_t* make_state(matrix_naive_dense_64F_t*, Rcpp::List)’: ../inst/include/bindings.hpp:50:15: warning: variable ‘c’ set but not used [-Wunused-but-set-variable] 50 | for (auto c : constraints_r) { | ^ In file included from rcpp_bindings.cpp:7: ../inst/include/adelie_ext/solver_cbps_naive.hpp: In instantiation of ‘void adelie_core::solver::cbps::naive::update_solutions(StateType&, GlmType&, StateGaussianPinType&, ValueType) [with StateType = adelie_core::state::StateGlmNaive, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>; GlmType = adelie_core::glm::GlmCBPS; StateGaussianPinType = adelie_core::state::StateGaussianPinNaive, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int>; ValueType = double]’: ../inst/include/adelie_ext/solver_cbps_naive.hpp:554:25: required from ‘adelie_core::solver::cbps::naive::solve, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, solve, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, rcpp_solver(Rcpp::List):: >(adelie_core::state::StateGlmNaive, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, rcpp_solver(Rcpp::List)::)::, solve, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, rcpp_solver(Rcpp::List):: >(adelie_core::state::StateGlmNaive, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, rcpp_solver(Rcpp::List)::)::, rcpp_solver(Rcpp::List):: >(adelie_core::state::StateGlmNaive, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, solve, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, rcpp_solver(Rcpp::List):: >(adelie_core::state::StateGlmNaive, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, rcpp_solver(Rcpp::List)::)::, solve, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, rcpp_solver(Rcpp::List):: >(adelie_core::state::StateGlmNaive, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, rcpp_solver(Rcpp::List)::)::, rcpp_solver(Rcpp::List)::):: [with auto:86 = adelie_core::state::StateGlmNaive, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>; auto:87 = adelie_core::state::StateGaussianPinNaive, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int>; auto:88 = double]’ 554 | update_solutions( | ~~~~~~~~~~~~~~~~^ 555 | state, | ~~~~~~ 556 | glm, | ~~~~ 557 | state_gaussian_pin_naive, | ~~~~~~~~~~~~~~~~~~~~~~~~~ 558 | lmda | ~~~~ 559 | ); | ~ ../inst/include/adelie_core/solver/solver_base.hpp:573:35: required from ‘void adelie_core::solver::solve_core(StateType&&, PBType&&, PBAddSuffixType, UpdateLossNullType, UpdateInvarianceType, UpdateSolutionsType, EarlyExitType, ScreenType, FitType) [with StateType = adelie_core::state::StateGlmNaive, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&; PBType = adelie_core::util::tq::tqdm_for_rvalues >&; PBAddSuffixType = cbps::naive::solve, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, solve, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, rcpp_solver(Rcpp::List):: >(adelie_core::state::StateGlmNaive, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, rcpp_solver(Rcpp::List)::)::, solve, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, rcpp_solver(Rcpp::List):: >(adelie_core::state::StateGlmNaive, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, rcpp_solver(Rcpp::List)::)::, rcpp_solver(Rcpp::List):: >(adelie_core::state::StateGlmNaive, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, solve, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, rcpp_solver(Rcpp::List):: >(adelie_core::state::StateGlmNaive, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, rcpp_solver(Rcpp::List)::)::, solve, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, rcpp_solver(Rcpp::List):: >(adelie_core::state::StateGlmNaive, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, rcpp_solver(Rcpp::List)::)::, rcpp_solver(Rcpp::List)::)::; UpdateLossNullType = cbps::naive::solve, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, solve, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, rcpp_solver(Rcpp::List):: >(adelie_core::state::StateGlmNaive, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, rcpp_solver(Rcpp::List)::)::, solve, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, rcpp_solver(Rcpp::List):: >(adelie_core::state::StateGlmNaive, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, rcpp_solver(Rcpp::List)::)::, rcpp_solver(Rcpp::List):: >(adelie_core::state::StateGlmNaive, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, solve, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, rcpp_solver(Rcpp::List):: >(adelie_core::state::StateGlmNaive, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, rcpp_solver(Rcpp::List)::)::, solve, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, rcpp_solver(Rcpp::List):: >(adelie_core::state::StateGlmNaive, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, rcpp_solver(Rcpp::List)::)::, rcpp_solver(Rcpp::List)::)::; UpdateInvarianceType = cbps::naive::solve, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, solve, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, rcpp_solver(Rcpp::List):: >(adelie_core::state::StateGlmNaive, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, rcpp_solver(Rcpp::List)::)::, solve, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, rcpp_solver(Rcpp::List):: >(adelie_core::state::StateGlmNaive, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, rcpp_solver(Rcpp::List)::)::, rcpp_solver(Rcpp::List):: >(adelie_core::state::StateGlmNaive, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, solve, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, rcpp_solver(Rcpp::List):: >(adelie_core::state::StateGlmNaive, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, rcpp_solver(Rcpp::List)::)::, solve, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, rcpp_solver(Rcpp::List):: >(adelie_core::state::StateGlmNaive, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, rcpp_solver(Rcpp::List)::)::, rcpp_solver(Rcpp::List)::)::; UpdateSolutionsType = cbps::naive::solve, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, solve, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, rcpp_solver(Rcpp::List):: >(adelie_core::state::StateGlmNaive, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, rcpp_solver(Rcpp::List)::)::, solve, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, rcpp_solver(Rcpp::List):: >(adelie_core::state::StateGlmNaive, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, rcpp_solver(Rcpp::List)::)::, rcpp_solver(Rcpp::List):: >(adelie_core::state::StateGlmNaive, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, solve, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, rcpp_solver(Rcpp::List):: >(adelie_core::state::StateGlmNaive, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, rcpp_solver(Rcpp::List)::)::, solve, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, rcpp_solver(Rcpp::List):: >(adelie_core::state::StateGlmNaive, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, rcpp_solver(Rcpp::List)::)::, rcpp_solver(Rcpp::List)::)::; EarlyExitType = cbps::naive::solve, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, solve, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, rcpp_solver(Rcpp::List):: >(adelie_core::state::StateGlmNaive, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, rcpp_solver(Rcpp::List)::)::, solve, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, rcpp_solver(Rcpp::List):: >(adelie_core::state::StateGlmNaive, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, rcpp_solver(Rcpp::List)::)::, rcpp_solver(Rcpp::List):: >(adelie_core::state::StateGlmNaive, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, solve, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, rcpp_solver(Rcpp::List):: >(adelie_core::state::StateGlmNaive, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, rcpp_solver(Rcpp::List)::)::, solve, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, rcpp_solver(Rcpp::List):: >(adelie_core::state::StateGlmNaive, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, rcpp_solver(Rcpp::List)::)::, rcpp_solver(Rcpp::List)::)::; ScreenType = cbps::naive::solve, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, solve, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, rcpp_solver(Rcpp::List):: >(adelie_core::state::StateGlmNaive, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, rcpp_solver(Rcpp::List)::)::, solve, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, rcpp_solver(Rcpp::List):: >(adelie_core::state::StateGlmNaive, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, rcpp_solver(Rcpp::List)::)::, rcpp_solver(Rcpp::List):: >(adelie_core::state::StateGlmNaive, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, solve, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, rcpp_solver(Rcpp::List):: >(adelie_core::state::StateGlmNaive, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, rcpp_solver(Rcpp::List)::)::, solve, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, rcpp_solver(Rcpp::List):: >(adelie_core::state::StateGlmNaive, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, rcpp_solver(Rcpp::List)::)::, rcpp_solver(Rcpp::List)::)::; FitType = cbps::naive::solve, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, solve, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, rcpp_solver(Rcpp::List):: >(adelie_core::state::StateGlmNaive, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, rcpp_solver(Rcpp::List)::)::, solve, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, rcpp_solver(Rcpp::List):: >(adelie_core::state::StateGlmNaive, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, rcpp_solver(Rcpp::List)::)::, rcpp_solver(Rcpp::List):: >(adelie_core::state::StateGlmNaive, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, solve, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, rcpp_solver(Rcpp::List):: >(adelie_core::state::StateGlmNaive, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, rcpp_solver(Rcpp::List)::)::, solve, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, rcpp_solver(Rcpp::List):: >(adelie_core::state::StateGlmNaive, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, rcpp_solver(Rcpp::List)::)::, rcpp_solver(Rcpp::List)::)::]’ 573 | update_solutions_f( | ~~~~~~~~~~~~~~~~~~^ 574 | state, | ~~~~~~ 575 | state_gaussian_pin, | ~~~~~~~~~~~~~~~~~~~ 576 | large_lmda_path[i] | ~~~~~~~~~~~~~~~~~~ 577 | ); | ~ ../inst/include/adelie_ext/solver_cbps_naive.hpp:584:23: required from ‘void adelie_core::solver::cbps::naive::solve(StateType&&, GlmType&&, PBType&&, ExitCondType, UpdateLossNullType, TidyType, CUIType) [with StateType = adelie_core::state::StateGlmNaive, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&; GlmType = adelie_core::glm::GlmCBPS&; PBType = adelie_core::util::tq::tqdm_for_rvalues >&; ExitCondType = rcpp_solver(Rcpp::List)::; UpdateLossNullType = solve, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, rcpp_solver(Rcpp::List):: >(adelie_core::state::StateGlmNaive, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, rcpp_solver(Rcpp::List)::)::; TidyType = solve, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, rcpp_solver(Rcpp::List):: >(adelie_core::state::StateGlmNaive, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&, adelie_core::glm::GlmCBPS&, adelie_core::util::tq::tqdm_for_rvalues >&, rcpp_solver(Rcpp::List)::, rcpp_solver(Rcpp::List)::)::; CUIType = rcpp_solver(Rcpp::List)::]’ 584 | solver::solve_core( | ~~~~~~~~~~~~~~~~~~^ 585 | state, | ~~~~~~ 586 | pb, | ~~~ 587 | pb_add_suffix_f, | ~~~~~~~~~~~~~~~~ 588 | update_loss_null_wrap_f, | ~~~~~~~~~~~~~~~~~~~~~~~~ 589 | update_invariance_f, | ~~~~~~~~~~~~~~~~~~~~ 590 | update_solutions_f, | ~~~~~~~~~~~~~~~~~~~ 591 | early_exit_f, | ~~~~~~~~~~~~~ 592 | screen_f, | ~~~~~~~~~ 593 | fit_f | ~~~~~ 594 | ); | ~ ../inst/include/adelie_ext/solver_cbps_naive.hpp:612:10: required from ‘void adelie_core::solver::cbps::naive::solve(StateType&&, GlmType&&, PBType&&, ExitCondType, CUIType) [with StateType = adelie_core::state::StateGlmNaive, adelie_core::matrix::MatrixNaiveDense, int>, double, int, int, int>&; GlmType = adelie_core::glm::GlmCBPS&; PBType = adelie_core::util::tq::tqdm_for_rvalues >&; ExitCondType = rcpp_solver(Rcpp::List)::; CUIType = rcpp_solver(Rcpp::List)::]’ 612 | solve( | ~~~~~^ 613 | std::forward(state), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 | std::forward(glm), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 615 | std::forward(pb), | ~~~~~~~~~~~~~~~~~~~~~~~~~ 616 | exit_cond_f, | ~~~~~~~~~~~~ 617 | [](auto& state, auto& glm, auto& buffer_pack) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 | update_loss_null(state, glm, buffer_pack); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 | }, | ~~ 620 | [](){}, | ~~~~~~~ 621 | check_user_interrupt | ~~~~~~~~~~~~~~~~~~~~ 622 | ); | ~ rcpp_bindings.cpp:41:39: required from here 41 | ad::solver::cbps::naive::solve( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 42 | *state, | ~~~~~~~ 43 | *glm, | ~~~~~ 44 | pb, | ~~~ 45 | [](){ return false; }, | ~~~~~~~~~~~~~~~~~~~~~~ 46 | check_user_interrupt | ~~~~~~~~~~~~~~~~~~~~ 47 | ); | ~ ../inst/include/adelie_ext/solver_cbps_naive.hpp:144:17: warning: unused variable ‘eta’ [-Wunused-variable] 144 | const auto& eta = state.eta; | ^~~ In file included from /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/Core:337, from /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/Dense:1, from /data/gannet/ripley/R/test-dev/RcppEigen/include/RcppEigenForward.h:28, from /data/gannet/ripley/R/test-dev/RcppEigen/include/RcppEigen.h:25, from ../inst/include/bindings.hpp:3: /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/products/SelfadjointMatrixVector.h: In function ‘static void Eigen::internal::selfadjoint_product_impl::run(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Block, -1, 1, false>; Lhs = Eigen::Block, -1, -1, false>; int LhsMode = 17; Rhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >]’: /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/products/SelfadjointMatrixVector.h:229:7: warning: ‘result’ may be used uninitialized [-Wmaybe-uninitialized] 227 | internal::selfadjoint_matrix_vector_product::Flags&RowMajorBit) ? RowMajor : ColMajor, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 | int(LhsUpLo), bool(LhsBlasTraits::NeedToConjugate), bool(RhsBlasTraits::NeedToConjugate)>::run | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 | ( | ^ 230 | lhs.rows(), // size | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 | &lhs.coeffRef(0,0), lhs.outerStride(), // lhs info | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 | actualRhsPtr, // rhs info | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 | actualDestPtr, // result info | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 | actualAlpha // scale factor | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 | ); | ~ /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/products/SelfadjointMatrixVector.h:41:6: note: by argument 4 of type ‘const double*’ to ‘static void Eigen::internal::selfadjoint_matrix_vector_product::run(Index, const Scalar*, Index, const Scalar*, Scalar*, Scalar) [with Scalar = double; Index = long int; int StorageOrder = 0; int UpLo = 1; bool ConjugateLhs = false; bool ConjugateRhs = false; int Version = 0]’ declared here 41 | void selfadjoint_matrix_vector_product::run( | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/Core:341: /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h: In function ‘static void Eigen::internal::trmv_selector::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose, 1, -1, true>, 1, -1, false> >; int Mode = 6]’: /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: ‘result’ may be used uninitialized [-Wmaybe-uninitialized] 327 | internal::triangular_matrix_vector_product | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 | | ~~~~~~~~~ 332 | ::run(actualLhs.rows(),actualLhs.cols(), | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 | actualLhs.data(),actualLhs.outerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 | actualRhsPtr,1, | ~~~~~~~~~~~~~~~ 335 | dest.data(),dest.innerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 | actualAlpha); | ~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type ‘const double*’ to ‘static void Eigen::internal::triangular_matrix_vector_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = double; bool ConjLhs = false; RhsScalar = double; bool ConjRhs = false; int Version = 0]’ declared here 105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -shared -L/usr/local/lib64 -o balnet.so RcppExports.o rcpp_bindings.o -fopenmp make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/balnet/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/balnet/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/balnet/src' installing to /data/gannet/ripley/R/packages/tests-devel/balnet.Rcheck/00LOCK-balnet/00new/balnet/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (balnet)