* installing *source* package ‘automerge’ ...
** this is package ‘automerge’ version ‘0.2.0’
** package ‘automerge’ successfully unpacked and MD5 sums checked
** using staged installation
Checking for system automerge installation...
System automerge not found, building from bundled source...
Building automerge-c...
using Rust package manager: 'cargo 1.87.0 (99624be96 2025-05-06) (Fedora 1.87.0-2.fc42)'
using Rust compiler: 'rustc 1.87.0 (17067e9ac 2025-05-09) (Fedora 1.87.0-2.fc42)'
Extracting vendored Rust dependencies...
-- The C compiler identification is GNU 15.1.1
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/gcc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
-- Found Threads: TRUE
-- Configuring done (0.9s)
-- Generating done (0.0s)
-- Build files have been written to: /data/gannet/ripley/R/packages/tests-devel/automerge/am-build
Building (this may take several minutes)...
gmake[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/automerge/am-build'
[ 12%] Producing the bindings' artifacts with Cargo...
-- Touching "/data/gannet/ripley/R/packages/tests-devel/automerge/src/automerge/rust/automerge-c/cbindgen.toml" if NOT_EXISTS "/data/gannet/ripley/R/packages/tests-devel/automerge/am-build/include/automerge-c/automerge.h"...
-- Touched "/data/gannet/ripley/R/packages/tests-devel/automerge/src/automerge/rust/automerge-c/cbindgen.toml".
warning: profiles for the non root package will be ignored, specify profiles at the workspace root:
package: /data/gannet/ripley/R/packages/tests-devel/automerge/src/automerge/rust/hexane/Cargo.toml
workspace: /data/gannet/ripley/R/packages/tests-devel/automerge/src/automerge/rust/Cargo.toml
warning: a `-j` argument was passed to Cargo but Cargo is also configured with an external jobserver in its environment, ignoring the `-j` parameter
Compiling proc-macro2 v1.0.106
Compiling unicode-ident v1.0.22
Compiling quote v1.0.43
Compiling serde_core v1.0.228
Compiling serde v1.0.228
Compiling libc v0.2.180
Compiling cfg-if v1.0.4
Compiling typenum v1.19.0
Compiling version_check v0.9.5
Compiling autocfg v1.5.0
Compiling zerocopy v0.8.33
Compiling rustix v1.1.3
Compiling getrandom v0.3.4
Compiling zmij v1.0.16
Compiling serde_json v1.0.149
Compiling os_str_bytes v6.6.1
Compiling bitflags v2.10.0
Compiling linux-raw-sys v0.11.0
Compiling hashbrown v0.12.3
Compiling syn v1.0.109
Compiling thiserror v2.0.18
Compiling once_cell v1.21.3
Compiling cbindgen v0.26.0
Compiling textwrap v0.16.2
Compiling strsim v0.10.0
Compiling termcolor v1.4.1
Compiling clap_lex v0.2.4
Compiling crc32fast v1.5.0
Compiling fastrand v2.3.0
Compiling memchr v2.7.6
Compiling generic-array v0.14.7
Compiling itoa v1.0.17
Compiling bitflags v1.3.2
Compiling simd-adler32 v0.3.8
Compiling log v0.4.29
Compiling adler2 v2.0.1
Compiling heck v0.4.1
Compiling pin-project-lite v0.2.16
Compiling either v1.15.0
Compiling cpufeatures v0.2.17
Compiling indexmap v1.9.3
Compiling tinyvec_macros v0.1.1
Compiling leb128 v0.2.5
Compiling unicode-segmentation v1.12.0
Compiling tinyvec v1.10.0
Compiling rustc-hash v2.1.1
Compiling hex v0.4.3
Compiling itertools v0.14.0
Compiling tracing-core v0.1.36
Compiling miniz_oxide v0.8.9
Compiling flate2 v1.1.8
Compiling syn v2.0.114
Compiling getrandom v0.2.17
Compiling rand_core v0.6.4
Compiling atty v0.2.14
Compiling crypto-common v0.1.7
Compiling block-buffer v0.10.4
Compiling clap v3.2.25
Compiling digest v0.10.7
Compiling tempfile v3.24.0
Compiling sha2 v0.10.9
Compiling ppv-lite86 v0.2.21
Compiling rand_chacha v0.3.1
Compiling rand v0.8.5
Compiling serde_derive v1.0.228
Compiling thiserror-impl v2.0.18
Compiling tracing-attributes v0.1.31
Compiling hexane v0.1.7 (/data/gannet/ripley/R/packages/tests-devel/automerge/src/automerge/rust/hexane)
Compiling tracing v0.1.44
Compiling toml v0.5.11
Compiling smol_str v0.2.2
Compiling automerge v0.7.3 (/data/gannet/ripley/R/packages/tests-devel/automerge/src/automerge/rust/automerge)
Compiling automerge-c v0.3.0 (/data/gannet/ripley/R/packages/tests-devel/automerge/src/automerge/rust/automerge-c)
Finished `release` profile [optimized] target(s) in 4m 38s
-- Replacing "A_M([^_]+)_" with "AM_\1_" in "/data/gannet/ripley/R/packages/tests-devel/automerge/am-build/include/automerge-c/automerge.h"...
-- Created/updated "/data/gannet/ripley/R/packages/tests-devel/automerge/am-build/include/automerge-c/automerge.h".
-- Replacing "USIZE_" with "+8" in "/data/gannet/ripley/R/packages/tests-devel/automerge/am-build/include/automerge-c/automerge.h"...
-- Created/updated "/data/gannet/ripley/R/packages/tests-devel/automerge/am-build/include/automerge-c/automerge.h".
[ 12%] Built target automerge_core_artifacts
[ 25%] Generating the enum string functions with CMake...
-- Generating header file "/data/gannet/ripley/R/packages/tests-devel/automerge/am-build/include/automerge-c/utils/enum_string.h"...
-- Generating source file "/data/gannet/ripley/R/packages/tests-devel/automerge/am-build/src/utils/enum_string.c"...
[ 37%] Building C object CMakeFiles/automerge.dir/src/utils/result.c.o
[ 50%] Building C object CMakeFiles/automerge.dir/src/utils/stack_callback_data.c.o
[ 62%] Building C object CMakeFiles/automerge.dir/src/utils/string.c.o
[ 75%] Building C object CMakeFiles/automerge.dir/src/utils/enum_string.c.o
[ 87%] Building C object CMakeFiles/automerge.dir/src/utils/stack.c.o
[100%] Linking C static library libautomerge.a
Merging the libraries' constituent object files...
Merging its dependent libraries into /data/gannet/ripley/R/packages/tests-devel/automerge/am-build/libautomerge.a...
/usr/bin/ar -x /data/gannet/ripley/R/packages/tests-devel/automerge/am-build/Cargo/target/x86_64-unknown-linux-gnu/release/libautomerge_core.a
/usr/bin/ar -rs libautomerge.a objects/automerge_core/*.o
[100%] Built target automerge
gmake[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/automerge/am-build'
gmake[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/automerge/am-build'
[ 12%] Built target automerge_core_artifacts
[100%] Built target automerge
Install the project...
-- Install configuration: "Release"
gmake[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/automerge/am-build'
Successfully built automerge-c from source
Configuration:
PKG_CFLAGS: -I../am-install/include
PKG_LIBS: ../am-install/lib/libautomerge.a -pthread -ldl -lm -lrt
** libs
using C compiler: ‘gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/automerge/src'
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -I../am-install/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c cursors.c -o cursors.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -I../am-install/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c document.c -o document.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -I../am-install/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c errors.c -o errors.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -I../am-install/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c init.c -o init.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -I../am-install/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c memory.c -o memory.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -I../am-install/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c objects.c -o objects.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -I../am-install/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sync.c -o sync.o
gcc -shared -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -fpic -L/usr/local/lib64 -o automerge.so cursors.o document.o errors.o init.o memory.o objects.o sync.o ../am-install/lib/libautomerge.a -pthread -ldl -lm -lrt
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/automerge/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/automerge/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/automerge/src'
installing to /data/gannet/ripley/R/packages/tests-devel/automerge.Rcheck/00LOCK-automerge/00new/automerge/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (automerge)