* installing *source* package ‘astrochron’ ...
** package ‘astrochron’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (GCC) 13.2.0’
using Fortran compiler: ‘GNU Fortran (GCC) 13.2.0’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/astrochron/src'
gfortran-13 -fpic -g -O2 -mtune=native -Wall -pedantic -c EHA_Rv6e.f -o EHA_Rv6e.o
EHA_Rv6e.f:66:42:
66 | dimension dg(mxdata),spw(mxdpss),dcf(mxdpss,mxdata)
| 1
Warning: Array 'dcf' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
EHA_Rv6e.f:66:18:
66 | dimension dg(mxdata),spw(mxdpss),dcf(mxdpss,mxdata)
| 1
Warning: Array 'dg' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
EHA_Rv6e.f:60:44:
60 | dimension u10(mxdpss),u20(mxdpss),dpss(mxdata,mxdpss),
| 1
Warning: Array 'dpss' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
EHA_Rv6e.f:68:17:
68 | dimension x(mxdata),y(mxdata),x1(mxdpss,mxdata),y1(mxdpss,mxdata)
| 1
Warning: Array 'x' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
EHA_Rv6e.f:68:38:
68 | dimension x(mxdata),y(mxdata),x1(mxdpss,mxdata),y1(mxdpss,mxdata)
| 1
Warning: Array 'x1' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
EHA_Rv6e.f:58:18:
58 | dimension xx(mxdata),yy(mxdata)
| 1
Warning: Array 'xx' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
EHA_Rv6e.f:68:27:
68 | dimension x(mxdata),y(mxdata),x1(mxdpss,mxdata),y1(mxdpss,mxdata)
| 1
Warning: Array 'y' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
EHA_Rv6e.f:68:56:
68 | dimension x(mxdata),y(mxdata),x1(mxdpss,mxdata),y1(mxdpss,mxdata)
| 1
Warning: Array 'y1' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
EHA_Rv6e.f:58:29:
58 | dimension xx(mxdata),yy(mxdata)
| 1
Warning: Array 'yy' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c Impulse_Response_v2.c -o Impulse_Response_v2.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c Root_Search_v2.c -o Root_Search_v2.o
gfortran-13 -fpic -g -O2 -mtune=native -Wall -pedantic -c asm1.8cR.f -o asm1.8cR.o
asm1.8cR.f:244:17:
244 | ife = DINT(fe)
| 1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
asm1.8cR.f:31:34:
31 | dimension rAsm(mxsr),saveAsm(mxsr,mxdata)
| 1
Warning: Array 'saveasm' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
asm1.8cR.f:33:21:
33 | dimension store(mxdata),sedrate(mxsr),temp(mxsr)
| 1
Warning: Array 'store' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
asm1.8cR.f:428:72:
428 | freqTmin = freqT(locfit) - (0.5d0*resol2)
| ^
Warning: 'resol2' may be used uninitialized [-Wmaybe-uninitialized]
asm1.8cR.f:385:29:
385 | if(ires.eq.1) resol2 = resol
| ^
note: 'resol2' was declared here
asm1.8cR.f:428:72:
428 | freqTmin = freqT(locfit) - (0.5d0*resol2)
| ^
Warning: 'locfit' may be used uninitialized [-Wmaybe-uninitialized]
asm1.8cR.f:416:21:
416 | locfit=k
| ^
note: 'locfit' was declared here
asm1.8cR.f:87:36:
87 | if(sedrate(1).lt.berSedmin.or.sedrate(numsed).gt.
| ^
Warning: 'sedrate' may be used uninitialized [-Wmaybe-uninitialized]
asm1.8cR.f:33:37:
33 | dimension store(mxdata),sedrate(mxsr),temp(mxsr)
| ^
note: 'sedrate' declared here
asm1.8cR.f:106:72:
106 | sedmax=sedmaxNew
| ^
Warning: 'sedmaxnew' may be used uninitialized [-Wmaybe-uninitialized]
asm1.8cR.f:98:25:
98 | sedmaxNew=sedrate(i)
| ^
note: 'sedmaxnew' was declared here
asm1.8cR.f:105:72:
105 | sedmin=sedminNew
| ^
Warning: 'sedminnew' may be used uninitialized [-Wmaybe-uninitialized]
asm1.8cR.f:94:25:
94 | sedminNew=sedrate(i)
| ^
note: 'sedminnew' was declared here
gfortran-13 -fpic -g -O2 -mtune=native -Wall -pedantic -c demean_v3.f -o demean_v3.o
gfortran-13 -fpic -g -O2 -mtune=native -Wall -pedantic -c detrend_v3.f -o detrend_v3.o
gfortran-13 -fpic -g -O2 -mtune=native -Wall -pedantic -c dlasrtastro_v2.f -o dlasrtastro_v2.o
gfortran-13 -fpic -g -O2 -mtune=native -Wall -pedantic -c dupmean_v3_R.f -o dupmean_v3_R.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c getunif.c -o getunif.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c init.c -o init.o
gfortran-13 -fpic -g -O2 -mtune=native -Wall -pedantic -c mwinGrid_R.f -o mwinGrid_R.o
mwinGrid_R.f:52:72:
52 | n2(k)=iout
| ^
Warning: 'iout' may be used uninitialized [-Wmaybe-uninitialized]
mwinGrid_R.f:49:35:
49 | if(x(i).le.winend) iout=i
| ^
note: 'iout' was declared here
mwinGrid_R.f:51:72:
51 | n1(k)=iin
| ^
Warning: 'iin' may be used uninitialized [-Wmaybe-uninitialized]
mwinGrid_R.f:45:36:
45 | if(x(i).ge.winstart) iin=i
| ^
note: 'iin' was declared here
gfortran-13 -fpic -g -O2 -mtune=native -Wall -pedantic -c mwin_R_v4.f -o mwin_R_v4.o
mwin_R_v4.f:72:72:
72 | midx2(i)= xhold - ( (xhold-x(i))/2.d0 )
| ^
Warning: 'xhold' may be used uninitialized [-Wmaybe-uninitialized]
mwin_R_v4.f:61:16:
61 | xhold=x(j)
| ^
note: 'xhold' was declared here
gfortran-13 -fpic -g -O2 -mtune=native -Wall -pedantic -c mwincenter_R_v4.f -o mwincenter_R_v4.o
mwincenter_R_v4.f:54:72:
54 | npts=iend-istart+1
| ^
Warning: 'iend' may be used uninitialized [-Wmaybe-uninitialized]
mwincenter_R_v4.f:50:56:
50 | if(x(i) - (x(ipts)-winsize/2.d0) .le. epsm) iend=i
| ^
note: 'iend' was declared here
mwincenter_R_v4.f:54:72:
54 | npts=iend-istart+1
| ^
Warning: 'istart' may be used uninitialized [-Wmaybe-uninitialized]
mwincenter_R_v4.f:45:60:
45 | if( (x(i)-winsize/2.d0) - x(1) .ge. -1*epsm) istart=i
| ^
note: 'istart' was declared here
mwincenter_R_v4.f:66:72:
66 | n1(k) = iin
| ^
Warning: 'iin' may be used uninitialized [-Wmaybe-uninitialized]
mwincenter_R_v4.f:64:45:
64 | if(x(j)-winstart. ge. -1*epsm) iin=j
| ^
note: 'iin' was declared here
mwincenter_R_v4.f:71:72:
71 | n2(k)=iout
| ^
Warning: 'iout' may be used uninitialized [-Wmaybe-uninitialized]
mwincenter_R_v4.f:69:41:
69 | if(x(j)-winend .le. epsm) iout=j
| ^
note: 'iout' was declared here
gfortran-13 -fpic -g -O2 -mtune=native -Wall -pedantic -c pad_v2.f -o pad_v2.o
gfortran-13 -fpic -g -O2 -mtune=native -Wall -pedantic -c peak_v2_R.f -o peak_v2_R.o
gfortran-13 -fpic -g -O2 -mtune=native -Wall -pedantic -c peakfilter_R.f -o peakfilter_R.o
peakfilter_R.f:5:23:
5 | & freqloc,probmax,freq,background,pwr,cl,loc,nout)
| 1
Warning: Unused dummy argument 'probmax' at (1) [-Wunused-dummy-argument]
gfortran-13 -fpic -g -O2 -mtune=native -Wall -pedantic -c singleton_v3.f -o singleton_v3.o
singleton_v3.f:231:8:
231 | K3=K2+KSPAN
| ^
Warning: 'k3' may be used uninitialized [-Wmaybe-uninitialized]
gfortran-13 -fpic -g -O2 -mtune=native -Wall -pedantic -c trough_v2_R.f -o trough_v2_R.o
gfortran-13 -fpic -g -O2 -mtune=native -Wall -pedantic -c tune_v2_R.f -o tune_v2_R.o
gcc-13 -shared -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -fpic -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o astrochron.so EHA_Rv6e.o Impulse_Response_v2.o Root_Search_v2.o asm1.8cR.o demean_v3.o detrend_v3.o dlasrtastro_v2.o dupmean_v3_R.o getunif.o init.o mwinGrid_R.o mwin_R_v4.o mwincenter_R_v4.o pad_v2.o peak_v2_R.o peakfilter_R.o singleton_v3.o trough_v2_R.o tune_v2_R.o -lgfortran -lm -lquadmath
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/astrochron/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/astrochron/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/astrochron/src'
installing to /data/gannet/ripley/R/packages/tests-devel/astrochron.Rcheck/00LOCK-astrochron/00new/astrochron/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (astrochron)