* installing *source* package ‘arulesSequences’ ...
** package ‘arulesSequences’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (GCC) 13.2.0’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/arulesSequences/src'
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c arrayIndex.c -o arrayIndex.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c dll.c -o dll.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c idlists.c -o idlists.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c makebin.c -o makebin.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c matrix.c -o matrix.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c ptree.c -o ptree.o
ptree.c: In function 'eballoc':
ptree.c:208:12: warning: pointer 'q' may be used after 'realloc' [-Wuse-after-free]
208 | eb = q;
| ~~~^~~
ptree.c:206:10: note: call to 'realloc' here
206 | eb = realloc(q, sizeof(int) * ne);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c similarity.c -o similarity.o
## binaries
( cd TPOSE; \
make CXX="g++-13 -std=gnu++17" CXXFLAGS="-g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection "\
LDFLAGS="-L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu"\
BINDIR="inst/bin"\
install-bin \
)
make[2]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/arulesSequences/src/TPOSE'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
g++-13 -std=gnu++17 -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c -o calcdb.o calcdb.cc
gcc-13 -shared -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -fpic -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o arulesSequences.so arrayIndex.o dll.o idlists.o makebin.o matrix.o ptree.o similarity.o
g++-13 -std=gnu++17 -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c -o Array.o Array.cc
g++-13 -std=gnu++17 -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o exttpose exttpose.cc calcdb.o Array.o -lm
exttpose.cc: In function 'void parse_args(int, char**)':
exttpose.cc:134:49: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'long unsigned int' [-Wsign-compare]
134 | if (read(c,(char *)&DBASE_NUM_TRANS,ITSZ) < ITSZ){
exttpose.cc:138:47: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'long unsigned int' [-Wsign-compare]
138 | if (read(c,(char *)&DBASE_MAXITEM,ITSZ) < ITSZ){
exttpose.cc:142:51: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
142 | if (read(c,(char *)&DBASE_AVG_CUST_SZ,FTSZ) < FTSZ){
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
exttpose.cc:146:52: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
146 | if (read(c,(char *)&DBASE_AVG_TRANS_SZ,FTSZ) < FTSZ){
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
exttpose.cc:150:49: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'long unsigned int' [-Wsign-compare]
150 | if (read(c,(char *)&DBASE_TOT_TRANS,ITSZ) < ITSZ){
exttpose.cc:158:49: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'long unsigned int' [-Wsign-compare]
158 | if (read(c,(char *)&DBASE_NUM_TRANS,ITSZ) < ITSZ){
exttpose.cc:162:47: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'long unsigned int' [-Wsign-compare]
162 | if (read(c,(char *)&DBASE_MAXITEM,ITSZ) < ITSZ){
exttpose.cc:166:52: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
166 | if (read(c,(char *)&DBASE_AVG_TRANS_SZ,FTSZ) < FTSZ){
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
exttpose.cc: In function 'void process_cust(int*, int, int, int*, Array**, CHAR*, CHAR*, char*, int*, int, int)':
exttpose.cc:438:69: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'long unsigned int' [-Wsign-compare]
438 | if (write(seqfd, (char *)&backidx[fidx[k]], ITSZ) < ITSZ){
exttpose.cc:442:69: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'long unsigned int' [-Wsign-compare]
442 | if (write(seqfd, (char *)&backidx[fidx[j]], ITSZ) < ITSZ){
exttpose.cc:461:66: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'long unsigned int' [-Wsign-compare]
461 | if (write(isetfd, (char *)&backidx[ii1], ITSZ) < ITSZ)
exttpose.cc:463:66: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'long unsigned int' [-Wsign-compare]
463 | if (write(isetfd, (char *)&backidx[ii2], ITSZ) < ITSZ)
exttpose.cc:474:72: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'long unsigned int' [-Wsign-compare]
474 | if (write(seqfd, (char *)&backidx[fidx[j]], ITSZ) < ITSZ)
exttpose.cc:476:72: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'long unsigned int' [-Wsign-compare]
476 | if (write(seqfd, (char *)&backidx[fidx[k]], ITSZ) < ITSZ)
exttpose.cc: In function 'void tpose()':
exttpose.cc:868:72: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'long unsigned int' [-Wsign-compare]
868 | if (write(isetfd, (char *)&buf[j], ITSZ) < ITSZ){
exttpose.cc:872:72: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'long unsigned int' [-Wsign-compare]
872 | if (write(isetfd, (char *)&buf[l], ITSZ) < ITSZ){
g++-13 -std=gnu++17 -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o getconf getconf.cc calcdb.o -lm
getconf.cc: In function 'int main(int, char**)':
getconf.cc:122:54: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'long unsigned int' [-Wsign-compare]
122 | if (write(conffd,(char *)&DBASE_NUM_CUST,ITSZ) < ITSZ){
| ^
getconf.cc:126:53: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'long unsigned int' [-Wsign-compare]
126 | if (write(conffd,(char *)&DBASE_MAXITEM,ITSZ) < ITSZ){
| ^
getconf.cc:130:57: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
130 | if (write(conffd,(char *)&DBASE_AVG_CUST_SZ,FTSZ) < FTSZ){
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
getconf.cc:134:58: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
134 | if (write(conffd,(char *)&DBASE_AVG_TRANS_SZ,FTSZ) < FTSZ){
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
getconf.cc:138:55: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'long unsigned int' [-Wsign-compare]
138 | if (write(conffd,(char *)&DBASE_NUM_TRANS,ITSZ) < ITSZ){
| ^
getconf.cc:142:54: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'long unsigned int' [-Wsign-compare]
142 | if (write(conffd,(char *)&DBASE_MINTRANS,ITSZ) < ITSZ){
| ^
getconf.cc:146:54: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'long unsigned int' [-Wsign-compare]
146 | if (write(conffd,(char *)&DBASE_MAXTRANS,ITSZ) < ITSZ){
| ^
getconf.cc:153:55: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'long unsigned int' [-Wsign-compare]
153 | if (write(conffd,(char *)&DBASE_NUM_TRANS,ITSZ) < ITSZ){
| ^
getconf.cc:157:53: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'long unsigned int' [-Wsign-compare]
157 | if (write(conffd,(char *)&DBASE_MAXITEM,ITSZ) < ITSZ){
| ^
getconf.cc:161:58: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
161 | if (write(conffd,(char *)&DBASE_AVG_TRANS_SZ,FTSZ) < FTSZ){
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
getconf.cc:165:54: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'long unsigned int' [-Wsign-compare]
165 | if (write(conffd,(char *)&DBASE_MINTRANS,ITSZ) < ITSZ){
| ^
getconf.cc:169:54: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'long unsigned int' [-Wsign-compare]
169 | if (write(conffd,(char *)&DBASE_MAXTRANS,ITSZ) < ITSZ){
| ^
g++-13 -std=gnu++17 -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o makebin makebin.cc
mkdir -p ../../inst/bin
cp exttpose getconf makebin ../../inst/bin
make[2]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/arulesSequences/src/TPOSE'
( cd cSPADE; \
make CXX="g++-13 -std=gnu++17" CXXFLAGS="-g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection "\
LDFLAGS="-L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu"\
BINDIR="inst/bin"\
install-bin \
)
make[2]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/arulesSequences/src/cSPADE'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
g++-13 -std=gnu++17 -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c Itemset.cc
g++-13 -std=gnu++17 -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c Array.cc
g++-13 -std=gnu++17 -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c Eqclass.cc
g++-13 -std=gnu++17 -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c Lists.cc
g++-13 -std=gnu++17 -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c extl2.cc
g++-13 -std=gnu++17 -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c partition.cc
partition.cc: In function 'void partition_get_minmaxcustid(int*, int, int, int&, int&)':
partition.cc:171:56: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
171 | if (read(DATAFD[pnum], (char *)&custid, ITSZ) < ITSZ){
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
partition.cc:177:56: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
177 | if (read(DATAFD[pnum], (char *)&custid, ITSZ) < ITSZ){
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
g++-13 -std=gnu++17 -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c maxgap.cc
g++-13 -std=gnu++17 -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o spade sequence.cc Itemset.o Array.o Eqclass.o Lists.o extl2.o partition.o maxgap.o -lm
sequence.cc: In function 'void parse_args(int, char**)':
sequence.cc:245:46: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'long unsigned int' [-Wsign-compare]
245 | if (read(c,(char *)&DBASE_NUM_TRANS,ITSZ) < ITSZ){
sequence.cc:255:44: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'long unsigned int' [-Wsign-compare]
255 | if (read(c,(char *)&DBASE_MAXITEM,ITSZ) < ITSZ){
sequence.cc:259:48: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
259 | if (read(c,(char *)&DBASE_AVG_CUST_SZ,FTSZ) < FTSZ){
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
sequence.cc:263:49: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
263 | if (read(c,(char *)&DBASE_AVG_TRANS_SZ,FTSZ) < FTSZ){
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
sequence.cc:267:46: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'long unsigned int' [-Wsign-compare]
267 | if (read(c,(char *)&DBASE_TOT_TRANS,ITSZ) < ITSZ){
cp spade ../../inst/bin
make[2]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/arulesSequences/src/cSPADE'
# Note that these are now the only ones in use.
../inst/bin/exttpose --version
Zaki TPOSE 2001 (2023)
../inst/bin/spade --version
Zaki cSPADE 2001 (2023)
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/arulesSequences/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/arulesSequences/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/arulesSequences/src'
installing to /data/gannet/ripley/R/packages/tests-devel/arulesSequences.Rcheck/00LOCK-arulesSequences/00new/arulesSequences/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for ‘itemsets’ in package ‘arulesSequences’
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (arulesSequences)