• using R Under development (unstable) (2024-09-06 r87103)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-14 (GCC) 14.2.0     GNU Fortran (GCC) 14.2.0
• running under: Fedora Linux 36 (Workstation Edition)
• using session charset: UTF-8
• using option ‘--no-stop-on-test-error’
• checking for file ‘analogue/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘analogue’ version ‘0.17-6’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘analogue’ can be installed ... [27s/36s] OK See the install log for details.
• used C compiler: ‘gcc-14 (GCC) 14.2.0’
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking whether startup messages can be suppressed ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [47s/64s] OK
• checking Rd files ... NOTE checkRd: (-1) cma.Rd:106-107: Lost braces in \itemize; meant \describe ? checkRd: (-1) cma.Rd:108-110: Lost braces in \itemize; meant \describe ? checkRd: (-1) deshrink.Rd:55: Escaped LaTeX specials: \& checkRd: (-1) deshrink.Rd:51: Escaped LaTeX specials: \& checkRd: (-1) mat.Rd:162: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) mat.Rd:163-164: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) mat.Rd:165-168: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) mat.Rd:175-179: Lost braces in \itemize; meant \describe ? checkRd: (-1) mat.Rd:180-181: Lost braces in \itemize; meant \describe ? checkRd: (-1) mat.Rd:182-183: Lost braces in \itemize; meant \describe ? checkRd: (-1) mat.Rd:184-186: Lost braces in \itemize; meant \describe ? checkRd: (-1) mat.Rd:187-188: Lost braces in \itemize; meant \describe ? checkRd: (-1) mat.Rd:189-190: Lost braces in \itemize; meant \describe ? checkRd: (-1) performance.Rd:25: Lost braces in \itemize; meant \describe ? checkRd: (-1) performance.Rd:26-27: Lost braces in \itemize; meant \describe ? checkRd: (-1) performance.Rd:28: Lost braces in \itemize; meant \describe ? checkRd: (-1) performance.Rd:29-30: Lost braces in \itemize; meant \describe ? checkRd: (-1) performance.Rd:31-32: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot.mat.Rd:60: Escaped LaTeX specials: \& checkRd: (-1) plot.wa.Rd:46: Escaped LaTeX specials: \& checkRd: (-1) predict.mat.Rd:61-62: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) predict.mat.Rd:63: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) predict.mat.Rd:64-65: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) predict.mat.Rd:66: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) predict.mat.Rd:67: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) predict.mat.Rd:68: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) predict.mat.Rd:69-70: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) predict.mat.Rd:76: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) predict.mat.Rd:77: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) predict.mat.Rd:78-79: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) predict.mat.Rd:80-81: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) predict.mat.Rd:82-83: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) predict.mat.Rd:84: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) predict.mat.Rd:85-86: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) predict.mat.Rd:87-88: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) predict.mat.Rd:89-90: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) predict.mat.Rd:96-97: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) predict.mat.Rd:98-99: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) predict.mat.Rd:100-101: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) predict.mat.Rd:113-114: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) predict.mat.Rd:115-118: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) predict.mat.Rd:119-121: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) predict.mat.Rd:122-124: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) predict.prcurve.Rd:5: Escaped LaTeX specials: \& checkRd: (-1) scores.prcurve.Rd:35: Lost braces; missing escapes or markup?     35 | variables {columns} then the matrix returned by \code{scores.prcurve}        | ^
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [21s/26s] OK
• checking differences from ‘analogue-Ex.Rout’ to ‘analogue-Ex.Rout.save’ ... NOTE 2c2 < This is vegan 2.6-8 --- > This is vegan 2.5-7 6945,6946d6944 < -- Model Summary -- < 6950d6947 < 6953,6954d6949 < -- Eigenvalues -- < 6984,6985d6978 < -- Model Summary -- < 6990d6982 < 6993,6994d6984 < -- Eigenvalues -- < 7039,7040d7028 < -- Model Summary -- < 7044d7031 < 7046,7047d7032 < < -- Eigenvalues --
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... OK   Running ‘test-all.R’
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [38s/50s] OK
• checking PDF version of manual ... [21s/29s] OK
• checking HTML version of manual ... [10s/15s] OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 2 NOTEs