Check results for 'alookr'

using R Under development (unstable) (2025-12-02 r89085)
using platform: x86_64-pc-linux-gnu
R was compiled by gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2) GNU Fortran (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)
running under: Fedora Linux 42 (Workstation Edition)
using session charset: UTF-8
using option ‘--no-stop-on-test-error’
checking for file ‘alookr/DESCRIPTION’ ... OK
checking extension type ... Package
this is package ‘alookr’ version ‘0.4.0’
package encoding: UTF-8
checking package namespace information ... OK
checking package dependencies ... OK
checking if this is a source package ... OK
checking if there is a namespace ... OK
checking for executable files ... OK
checking for hidden files and directories ... OK
checking for portable file names ... OK
checking for sufficient/correct file permissions ... OK
checking whether package ‘alookr’ can be installed ... [26s/119s] OK See the install log for details.
checking package directory ... OK
checking ‘build’ directory ... OK
checking DESCRIPTION meta-information ... OK
checking top-level files ... OK
checking for left-over files ... OK
checking index information ... OK
checking package subdirectories ... OK
checking code files for non-ASCII characters ... OK
checking R files for syntax errors ... OK
checking whether the package can be loaded ... [7s/28s] OK
checking whether the package can be loaded with stated dependencies ... [7s/29s] OK
checking whether the package can be unloaded cleanly ... [6s/31s] OK
checking whether the namespace can be loaded with stated dependencies ... [7s/24s] OK
checking whether the namespace can be unloaded cleanly ... [7s/28s] OK
checking loading without being on the library search path ... [7s/33s] OK
checking use of S3 registration ... OK
checking dependencies in R code ... OK
checking S3 generic/method consistency ... OK
checking replacement functions ... OK
checking foreign function calls ... OK
checking R code for possible problems ... [35s/136s] OK
checking Rd files ... OK
checking Rd metadata ... OK
checking Rd line widths ... OK
checking Rd cross-references ... OK
checking for missing documentation entries ... OK
checking for code/documentation mismatches ... OK
checking Rd \usage sections ... OK
checking Rd contents ... OK
checking for unstated dependencies in examples ... OK
checking installed files from ‘inst/doc’ ... OK
checking files in ‘vignettes’ ... OK
checking examples ... [23s/78s] ERROR Running examples in ‘alookr-Ex.R’ failed The error most likely occurred in: > ### Name: run_models > ### Title: Fit binary classification model > ### Aliases: run_models > > ### ** Examples > > library(dplyr) Attaching package: ‘dplyr’ The following object is masked from ‘package:randomForest’: combine The following objects are masked from ‘package:stats’: filter, lag The following objects are masked from ‘package:base’: intersect, setdiff, setequal, union > > # Divide the train data set and the test data set. > sb <- rpart::kyphosis %>% + split_by(Kyphosis) > > # Extract the train data set from original data set. > train <- sb %>% + extract_set(set = "train") > > # Extract the test data set from original data set. > test <- sb %>% + extract_set(set = "test") > > # Sampling for unbalanced data set using SMOTE(synthetic minority over-sampling technique). > train <- sb %>% + sampling_target(seed = 1234L, method = "ubSMOTE") > > # Cleaning the set. > train <- train %>% + cleanse ── Checking unique value ─────────────────────────── unique value is one ── No variables that unique value is one. ── Checking unique rate ─────────────────────────────── high unique rate ── No variables that high unique rate. ── Checking character variables ─────────────────────── categorical data ── No character variables. > > # Run the model fitting. > result <- run_models(.data = train, target = "Kyphosis", positive = "present") Warning in throw_err_or_depr_msg("Passed unrecognized parameters: ", paste(head(names_unrecognized), : Passed unrecognized parameters: verbose. This warning will become an error in a future version. Warning in throw_err_or_depr_msg("Parameter '", match_old, "' has been renamed to '", : Parameter 'data' has been renamed to 'x'. This warning will become an error in a future version. Warning in throw_err_or_depr_msg("Parameter '", match_old, "' has been renamed to '", : Parameter 'label' has been renamed to 'y'. This warning will become an error in a future version. Warning in throw_err_or_depr_msg("Parameter '", match_old, "' has been renamed to '", : Parameter 'eta' has been renamed to 'learning_rate'. This warning will become an error in a future version. Error in `purrr::map()`: ℹ In index: 6. Caused by error in `process.y.margin.and.objective()`: ! Got numeric 'y' - supported objectives for this data are: reg:squarederror, reg:squaredlogerror, reg:logistic, reg:pseudohubererror, reg:absoluteerror, reg:quantileerror, count:poisson, reg:gamma, reg:tweedie. Was passed: binary:logistic Backtrace: ▆ 1. ├─alookr::run_models(.data = train, target = "Kyphosis", positive = "present") 2. │ └─... %>% ... 3. ├─tibble::tibble(...) 4. │ └─tibble:::tibble_quos(xs, .rows, .name_repair) 5. │ └─rlang::eval_tidy(xs[[j]], mask) 6. ├─purrr::map(., ~future::value(.x)) 7. │ └─purrr:::map_("list", .x, .f, ..., .progress = .progress) 8. │ ├─purrr:::with_indexed_errors(...) 9. │ │ └─base::withCallingHandlers(...) 10. │ ├─purrr:::call_with_cleanup(...) 11. │ └─alookr (local) .f(.x[[i]], ...) 12. │ ├─future::value(.x) 13. │ └─future:::value.Future(.x) 14. │ └─future:::signalConditions(...) 15. │ └─base::stop(condition) 16. └─purrr (local) `<fn>`(`<smplErrr>`) 17. └─cli::cli_abort(...) 18. └─rlang::abort(...) Execution halted
checking for unstated dependencies in vignettes ... OK
checking package vignettes ... OK
checking re-building of vignette outputs ... [24s/90s] OK
checking PDF version of manual ... [10s/40s] OK
checking HTML version of manual ... OK
checking for non-standard things in the check directory ... OK
checking for detritus in the temp directory ... OK
DONE

Status: 1 ERROR