* installing *source* package ‘agcounts’ ...
** package ‘agcounts’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (GCC) 14.0.1 20240503 (prerelease)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/agcounts/src'
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c gcalibrate.cpp -o gcalibrate.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c resample_helpers.cpp -o resample_helpers.o
gcalibrate.cpp: In function 'double calcRes(Rcpp::NumericMatrix, Rcpp::NumericMatrix, Rcpp::DoubleVector)':
gcalibrate.cpp:68:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
   68 |   for(int i = 0; i < m.n_cols; i++){
      |                  ~~^~~~~~~~~~
g++-14 -std=gnu++17 -shared -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o agcounts.so RcppExports.o gcalibrate.o resample_helpers.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/agcounts/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/agcounts/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/agcounts/src'
installing to /data/gannet/ripley/R/packages/tests-devel/agcounts.Rcheck/00LOCK-agcounts/00new/agcounts/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (agcounts)