Install log for 'adlaplace'

* installing *source* package ‘adlaplace’ ...
** this is package ‘adlaplace’ version ‘0.7.4’
** package ‘adlaplace’ successfully unpacked and MD5 sums checked
** using staged installation
configure: OpenMP enabled using -fopenmp
configure: using -fvisibility=hidden
** libs
using C++ compiler: ‘g++ (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2)’
make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-devel/adlaplace/src'
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I../src/include  -DEIGEN_DONT_PARALLELIZE -I'/data/localhost/ripley/R/test-dev/Rcpp/include' -I'/data/localhost/ripley/R/test-dev/RcppEigen/include' -I'/data/localhost/ripley/R/test-dev/trustOptim/include' -I'/data/localhost/ripley/R/R-devel/library/Matrix/include' -I'/data/localhost/ripley/R/test-dev/RCppAD/include' -I/usr/local/include   -fopenmp   -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I../src/include  -DEIGEN_DONT_PARALLELIZE -I'/data/localhost/ripley/R/test-dev/Rcpp/include' -I'/data/localhost/ripley/R/test-dev/RcppEigen/include' -I'/data/localhost/ripley/R/test-dev/trustOptim/include' -I'/data/localhost/ripley/R/R-devel/library/Matrix/include' -I'/data/localhost/ripley/R/test-dev/RCppAD/include' -I/usr/local/include   -fopenmp   -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c ad_pack_create.cpp -o ad_pack_create.o
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I../src/include  -DEIGEN_DONT_PARALLELIZE -I'/data/localhost/ripley/R/test-dev/Rcpp/include' -I'/data/localhost/ripley/R/test-dev/RcppEigen/include' -I'/data/localhost/ripley/R/test-dev/trustOptim/include' -I'/data/localhost/ripley/R/R-devel/library/Matrix/include' -I'/data/localhost/ripley/R/test-dev/RCppAD/include' -I/usr/local/include   -fopenmp   -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c ad_pack_random_mult.cpp -o ad_pack_random_mult.o
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I../src/include  -DEIGEN_DONT_PARALLELIZE -I'/data/localhost/ripley/R/test-dev/Rcpp/include' -I'/data/localhost/ripley/R/test-dev/RcppEigen/include' -I'/data/localhost/ripley/R/test-dev/trustOptim/include' -I'/data/localhost/ripley/R/R-devel/library/Matrix/include' -I'/data/localhost/ripley/R/test-dev/RCppAD/include' -I/usr/local/include   -fopenmp   -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c backend_eval.cpp -o backend_eval.o
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I../src/include  -DEIGEN_DONT_PARALLELIZE -I'/data/localhost/ripley/R/test-dev/Rcpp/include' -I'/data/localhost/ripley/R/test-dev/RcppEigen/include' -I'/data/localhost/ripley/R/test-dev/trustOptim/include' -I'/data/localhost/ripley/R/R-devel/library/Matrix/include' -I'/data/localhost/ripley/R/test-dev/RCppAD/include' -I/usr/local/include   -fopenmp   -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c chol_update.cpp -o chol_update.o
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I../src/include  -DEIGEN_DONT_PARALLELIZE -I'/data/localhost/ripley/R/test-dev/Rcpp/include' -I'/data/localhost/ripley/R/test-dev/RcppEigen/include' -I'/data/localhost/ripley/R/test-dev/trustOptim/include' -I'/data/localhost/ripley/R/R-devel/library/Matrix/include' -I'/data/localhost/ripley/R/test-dev/RCppAD/include' -I/usr/local/include   -fopenmp   -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c densities.cpp -o densities.o
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I../src/include  -DEIGEN_DONT_PARALLELIZE -I'/data/localhost/ripley/R/test-dev/Rcpp/include' -I'/data/localhost/ripley/R/test-dev/RcppEigen/include' -I'/data/localhost/ripley/R/test-dev/trustOptim/include' -I'/data/localhost/ripley/R/R-devel/library/Matrix/include' -I'/data/localhost/ripley/R/test-dev/RCppAD/include' -I/usr/local/include   -fopenmp   -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c eval_derivs.cpp -o eval_derivs.o
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I../src/include  -DEIGEN_DONT_PARALLELIZE -I'/data/localhost/ripley/R/test-dev/Rcpp/include' -I'/data/localhost/ripley/R/test-dev/RcppEigen/include' -I'/data/localhost/ripley/R/test-dev/trustOptim/include' -I'/data/localhost/ripley/R/R-devel/library/Matrix/include' -I'/data/localhost/ripley/R/test-dev/RCppAD/include' -I/usr/local/include   -fopenmp   -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c grad_obs_units.cpp -o grad_obs_units.o
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I../src/include  -DEIGEN_DONT_PARALLELIZE -I'/data/localhost/ripley/R/test-dev/Rcpp/include' -I'/data/localhost/ripley/R/test-dev/RcppEigen/include' -I'/data/localhost/ripley/R/test-dev/trustOptim/include' -I'/data/localhost/ripley/R/R-devel/library/Matrix/include' -I'/data/localhost/ripley/R/test-dev/RCppAD/include' -I/usr/local/include   -fopenmp   -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c inner_opt.cpp -o inner_opt.o
In file included from inner_opt.cpp:13:
/data/localhost/ripley/R/test-dev/trustOptim/include/CG-sparse.h: In instantiation of ‘void Trust_CG_Sparse<TP, TFunc, THess, TPreLLt>::update_precond_modified_Cholesky() [with TP = Eigen::Matrix<double, -1, 1>; TFunc = AD_Func_Opt; THess = Eigen::SparseMatrix<double, 0, int>; TPreLLt = Eigen::SimplicialLLT<Eigen::SparseMatrix<double, 0, int> >]’:
/data/localhost/ripley/R/test-dev/trustOptim/include/CG-sparse.h:140:2:   required from ‘void Trust_CG_Sparse<TP, TFunc, THess, TPreLLt>::init_precond_modified_Cholesky() [with TP = Eigen::Matrix<double, -1, 1>; TFunc = AD_Func_Opt; THess = Eigen::SparseMatrix<double, 0, int>; TPreLLt = Eigen::SimplicialLLT<Eigen::SparseMatrix<double, 0, int> >]’
  140 |         update_precond_modified_Cholesky();
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/localhost/ripley/R/test-dev/trustOptim/include/CG-sparse.h:113:6:   required from ‘void Trust_CG_Sparse<TP, TFunc, THess, TPreLLt>::init_precond() [with TP = Eigen::Matrix<double, -1, 1>; TFunc = AD_Func_Opt; THess = Eigen::SparseMatrix<double, 0, int>; TPreLLt = Eigen::SimplicialLLT<Eigen::SparseMatrix<double, 0, int> >]’
  113 |             init_precond_modified_Cholesky();
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/localhost/ripley/R/test-dev/trustOptim/include/CG-sparse.h:189:2:   required from ‘Trust_CG_Sparse<TP, TFunc, THess, TPreLLt>::Trust_CG_Sparse(TFunc&, const Eigen::MatrixBase<Derived>&, const double&, const double&, const double&, const double&, const int&, int, const int&, const int&, const int&, const double&, const double&, const double&, const double&, const double&, const double&, const int&, const int&, const int&) [with TP = Eigen::Matrix<double, -1, 1>; TFunc = AD_Func_Opt; THess = Eigen::SparseMatrix<double, 0, int>; TPreLLt = Eigen::SimplicialLLT<Eigen::SparseMatrix<double, 0, int> >]’
  189 |         init_precond();
      |         ^~~~~~~~~~~~
inner_opt.cpp:270:77:   required from here
  270 |         control.precond_refresh_freq, control.precond_ID, control.trust_iter);
      |                                                                             ^
/data/localhost/ripley/R/test-dev/trustOptim/include/CG-sparse.h:90:13: warning: variable ‘ii’ set but not used [-Wunused-but-set-variable=]
   90 |         int ii = 0;
      |             ^~
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I../src/include  -DEIGEN_DONT_PARALLELIZE -I'/data/localhost/ripley/R/test-dev/Rcpp/include' -I'/data/localhost/ripley/R/test-dev/RcppEigen/include' -I'/data/localhost/ripley/R/test-dev/trustOptim/include' -I'/data/localhost/ripley/R/R-devel/library/Matrix/include' -I'/data/localhost/ripley/R/test-dev/RCppAD/include' -I/usr/local/include   -fopenmp   -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c profile_deriv.cpp -o profile_deriv.o
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I../src/include  -DEIGEN_DONT_PARALLELIZE -I'/data/localhost/ripley/R/test-dev/Rcpp/include' -I'/data/localhost/ripley/R/test-dev/RcppEigen/include' -I'/data/localhost/ripley/R/test-dev/trustOptim/include' -I'/data/localhost/ripley/R/R-devel/library/Matrix/include' -I'/data/localhost/ripley/R/test-dev/RCppAD/include' -I/usr/local/include   -fopenmp   -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c register.cpp -o register.o
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I../src/include  -DEIGEN_DONT_PARALLELIZE -I'/data/localhost/ripley/R/test-dev/Rcpp/include' -I'/data/localhost/ripley/R/test-dev/RcppEigen/include' -I'/data/localhost/ripley/R/test-dev/trustOptim/include' -I'/data/localhost/ripley/R/R-devel/library/Matrix/include' -I'/data/localhost/ripley/R/test-dev/RCppAD/include' -I/usr/local/include   -fopenmp   -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c runtime.cpp -o runtime.o
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I../src/include  -DEIGEN_DONT_PARALLELIZE -I'/data/localhost/ripley/R/test-dev/Rcpp/include' -I'/data/localhost/ripley/R/test-dev/RcppEigen/include' -I'/data/localhost/ripley/R/test-dev/trustOptim/include' -I'/data/localhost/ripley/R/R-devel/library/Matrix/include' -I'/data/localhost/ripley/R/test-dev/RCppAD/include' -I/usr/local/include   -fopenmp   -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c takahashi_davis.cpp -o takahashi_davis.o
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I../src/include  -DEIGEN_DONT_PARALLELIZE -I'/data/localhost/ripley/R/test-dev/Rcpp/include' -I'/data/localhost/ripley/R/test-dev/RcppEigen/include' -I'/data/localhost/ripley/R/test-dev/trustOptim/include' -I'/data/localhost/ripley/R/R-devel/library/Matrix/include' -I'/data/localhost/ripley/R/test-dev/RCppAD/include' -I/usr/local/include   -fopenmp   -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c threads.cpp -o threads.o
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I../src/include  -DEIGEN_DONT_PARALLELIZE -I'/data/localhost/ripley/R/test-dev/Rcpp/include' -I'/data/localhost/ripley/R/test-dev/RcppEigen/include' -I'/data/localhost/ripley/R/test-dev/trustOptim/include' -I'/data/localhost/ripley/R/R-devel/library/Matrix/include' -I'/data/localhost/ripley/R/test-dev/RCppAD/include' -I/usr/local/include   -fopenmp   -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c trace_hinv_t.cpp -o trace_hinv_t.o
threads.cpp:118:6: warning: ‘bool {anonymous}::clamp_team_threads_enabled()’ defined but not used [-Wunused-function]
  118 | bool clamp_team_threads_enabled() {
      |      ^~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -std=gnu++20 -shared -L/usr/local/lib64 -o adlaplace.so RcppExports.o ad_pack_create.o ad_pack_random_mult.o backend_eval.o chol_update.o densities.o eval_derivs.o grad_obs_units.o inner_opt.o profile_deriv.o register.o runtime.o takahashi_davis.o threads.o trace_hinv_t.o -fopenmp
if command -v strip >/dev/null 2>&1; then case "$(uname -s)" in Linux) strip --strip-debug "adlaplace.so";; esac; fi
make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-devel/adlaplace/src'
make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-devel/adlaplace/src'
make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-devel/adlaplace/src'
installing to /data/localhost/ripley/R/packages/tests-devel/adlaplace.Rcheck/00LOCK-adlaplace/00new/adlaplace/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (adlaplace)