* installing *source* package ‘adespatial’ ...
** this is package ‘adespatial’ version ‘0.3-28’
** package ‘adespatial’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
using Fortran compiler: ‘GNU Fortran (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/adespatial/src'
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c WRperiodogram.c -o WRperiodogram.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c adesub.c -o adesub.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c betadiv.c -o betadiv.o
betadiv.c: In function ‘euclidean’:
betadiv.c:36:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
   36 |     for (i = 0; i < I; i++)
      |     ^~~
In file included from betadiv.c:7:
/data/gannet/ripley/R/R-devel/include/Rinternals.h:389:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  389 | #define UNPROTECT(n)    Rf_unprotect(n)
      |                         ^~~~~~~~~~~~
betadiv.c:42:9: note: in expansion of macro ‘UNPROTECT’
   42 |         UNPROTECT(3);
      |         ^~~~~~~~~
betadiv.c: In function ‘manhattan’:
betadiv.c:476:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  476 |     for (i=0; i<I; i++)
      |     ^~~
/data/gannet/ripley/R/R-devel/include/Rinternals.h:389:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  389 | #define UNPROTECT(n)    Rf_unprotect(n)
      |                         ^~~~~~~~~~~~
betadiv.c:483:9: note: in expansion of macro ‘UNPROTECT’
  483 |         UNPROTECT(3);
      |         ^~~~~~~~~
betadiv.c: In function ‘canberra’:
betadiv.c:506:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  506 |     for (i=0; i<I; i++)
      |     ^~~
/data/gannet/ripley/R/R-devel/include/Rinternals.h:389:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  389 | #define UNPROTECT(n)    Rf_unprotect(n)
      |                         ^~~~~~~~~~~~
betadiv.c:530:9: note: in expansion of macro ‘UNPROTECT’
  530 |         UNPROTECT(4);
      |         ^~~~~~~~~
betadiv.c: In function ‘kulczynski’:
betadiv.c:549:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  549 |     for (i=0; i<I; i++)
      |     ^~~
/data/gannet/ripley/R/R-devel/include/Rinternals.h:389:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  389 | #define UNPROTECT(n)    Rf_unprotect(n)
      |                         ^~~~~~~~~~~~
betadiv.c:563:9: note: in expansion of macro ‘UNPROTECT’
  563 |         UNPROTECT(3);
      |         ^~~~~~~~~
betadiv.c: In function ‘divergence’:
betadiv.c:586:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  586 |     for (i=0; i<I; i++)
      |     ^~~
/data/gannet/ripley/R/R-devel/include/Rinternals.h:389:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  389 | #define UNPROTECT(n)    Rf_unprotect(n)
      |                         ^~~~~~~~~~~~
betadiv.c:608:9: note: in expansion of macro ‘UNPROTECT’
  608 |         UNPROTECT(4);
      |         ^~~~~~~~~
betadiv.c: In function ‘modmean’:
betadiv.c:630:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  630 |     for (i=0; i<I; i++)
      |     ^~~
/data/gannet/ripley/R/R-devel/include/Rinternals.h:389:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  389 | #define UNPROTECT(n)    Rf_unprotect(n)
      |                         ^~~~~~~~~~~~
betadiv.c:646:9: note: in expansion of macro ‘UNPROTECT’
  646 |         UNPROTECT(4);
      |         ^~~~~~~~~
betadiv.c: In function ‘whittaker’:
betadiv.c:701:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  701 |     for (i=0; i<I; i++)
      |     ^~~
/data/gannet/ripley/R/R-devel/include/Rinternals.h:389:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  389 | #define UNPROTECT(n)    Rf_unprotect(n)
      |                         ^~~~~~~~~~~~
betadiv.c:718:9: note: in expansion of macro ‘UNPROTECT’
  718 |         UNPROTECT(3);
      |         ^~~~~~~~~
betadiv.c: In function ‘wishart’:
betadiv.c:737:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  737 |     for (i=0; i<I; i++)
      |     ^~~
/data/gannet/ripley/R/R-devel/include/Rinternals.h:389:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  389 | #define UNPROTECT(n)    Rf_unprotect(n)
      |                         ^~~~~~~~~~~~
betadiv.c:752:9: note: in expansion of macro ‘UNPROTECT’
  752 |         UNPROTECT(3);
      |         ^~~~~~~~~
betadiv.c: In function ‘percentdiff’:
betadiv.c:982:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  982 |     for (i = 0; i < I; i++)
      |     ^~~
/data/gannet/ripley/R/R-devel/include/Rinternals.h:389:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  389 | #define UNPROTECT(n)    Rf_unprotect(n)
      |                         ^~~~~~~~~~~~
betadiv.c:1000:9: note: in expansion of macro ‘UNPROTECT’
 1000 |         UNPROTECT(6);
      |         ^~~~~~~~~
betadiv.c: In function ‘binary_D’:
betadiv.c:1020:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1020 |     for (i=0; i<I; i++)
      |     ^~~
/data/gannet/ripley/R/R-devel/include/Rinternals.h:389:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  389 | #define UNPROTECT(n)    Rf_unprotect(n)
      |                         ^~~~~~~~~~~~
betadiv.c:1035:9: note: in expansion of macro ‘UNPROTECT’
 1035 |         UNPROTECT(4);
      |         ^~~~~~~~~
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c buildbinary.c -o buildbinary.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c constr.hclust.c -o constr.hclust.o
constr.hclust.c: In function ‘initNNlist’:
constr.hclust.c:110:15: warning: ‘nn’ may be used uninitialized [-Wmaybe-uninitialized]
  110 |     nn_idx[i] = nn;
      |     ~~~~~~~~~~^~~~
constr.hclust.c:100:25: note: ‘nn’ was declared here
  100 |   unsigned int i, j, k, nn;
      |                         ^~
constr.hclust.c: In function ‘updateNNlist’:
constr.hclust.c:131:13: warning: ‘nn’ may be used uninitialized [-Wmaybe-uninitialized]
  131 |   nn_idx[i] = nn;
      |   ~~~~~~~~~~^~~~
constr.hclust.c:122:22: note: ‘nn’ was declared here
  122 |   unsigned int j, k, nn;
      |                      ^~
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c forward.c -o forward.o
gfortran  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c geoddist.f -o geoddist.o
f951: Warning: Nonconforming tab character in column 1 of line 62 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 63 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 64 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 65 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 66 [-Wtabs]
geoddist.f:67:14:

   67 |       end if
      |                 1
Warning: Nonconforming tab character at (1) [-Wtabs]
gfortran  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c geodistv.f -o geodistv.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c init.c -o init.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c stipermute.c -o stipermute.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c testsmoran.c -o testsmoran.o
gcc -shared -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -fpic -L/usr/local/lib64 -o adespatial.so WRperiodogram.o adesub.o betadiv.o buildbinary.o constr.hclust.o forward.o geoddist.o geodistv.o init.o stipermute.o testsmoran.o -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/adespatial/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/adespatial/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/adespatial/src'
installing to /data/gannet/ripley/R/packages/tests-devel/adespatial.Rcheck/00LOCK-adespatial/00new/adespatial/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (adespatial)