* installing *source* package ‘adelie’ ...
** this is package ‘adelie’ version ‘1.0.10’
** package ‘adelie’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
specified C++17
using C++ compiler: ‘g++ (GCC) 16.1.1 20260515 (Red Hat 16.1.1-2)’
using C++17
make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-devel/adelie/src'
g++ -std=gnu++17 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -I../inst/adelie/adelie/src/include -DEIGEN_PERMANENTLY_DISABLE_STUPID_WARNINGS -I'/data/localhost/ripley/R/test-dev/Rcpp/include' -I'/data/localhost/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -I../inst/adelie/adelie/src/include -DEIGEN_PERMANENTLY_DISABLE_STUPID_WARNINGS -I'/data/localhost/ripley/R/test-dev/Rcpp/include' -I'/data/localhost/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c rcpp_configs.cpp -o rcpp_configs.o
g++ -std=gnu++17 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -I../inst/adelie/adelie/src/include -DEIGEN_PERMANENTLY_DISABLE_STUPID_WARNINGS -I'/data/localhost/ripley/R/test-dev/Rcpp/include' -I'/data/localhost/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c rcpp_constraint.cpp -o rcpp_constraint.o
g++ -std=gnu++17 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -I../inst/adelie/adelie/src/include -DEIGEN_PERMANENTLY_DISABLE_STUPID_WARNINGS -I'/data/localhost/ripley/R/test-dev/Rcpp/include' -I'/data/localhost/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c rcpp_glm.cpp -o rcpp_glm.o
g++ -std=gnu++17 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -I../inst/adelie/adelie/src/include -DEIGEN_PERMANENTLY_DISABLE_STUPID_WARNINGS -I'/data/localhost/ripley/R/test-dev/Rcpp/include' -I'/data/localhost/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c rcpp_io.cpp -o rcpp_io.o
g++ -std=gnu++17 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -I../inst/adelie/adelie/src/include -DEIGEN_PERMANENTLY_DISABLE_STUPID_WARNINGS -I'/data/localhost/ripley/R/test-dev/Rcpp/include' -I'/data/localhost/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c rcpp_matrix.cpp -o rcpp_matrix.o
In file included from rcpp_matrix.h:15,
from rcpp_matrix.cpp:1:
../inst/adelie/adelie/src/include/adelie_core/matrix/matrix_naive_concatenate.ipp: In instantiation of ‘static auto adelie_core::matrix::MatrixNaiveCConcatenate<ValueType, IndexType>::init_outer(const std::vector<adelie_core::matrix::MatrixNaiveBase<ValueType, IndexType>*>&) [with ValueType = double; IndexType = int]’:
../inst/adelie/adelie/src/include/adelie_core/matrix/matrix_naive_concatenate.ipp:105:22: required from ‘adelie_core::matrix::MatrixNaiveCConcatenate<ValueType, IndexType>::MatrixNaiveCConcatenate(const std::vector<adelie_core::matrix::MatrixNaiveBase<ValueType, IndexType>*>&, size_t) [with ValueType = double; IndexType = int; size_t = long unsigned int]’
105 | _outer(init_outer(mat_list)),
| ~~~~~~~~~~^~~~~~~~~~
/usr/include/c++/16/bits/stl_construct.h:133:7: required from ‘void std::_Construct(_Tp*, _Args&& ...) [with _Tp = adelie_core::matrix::MatrixNaiveCConcatenate<double, int>; _Args = {vector<adelie_core::matrix::MatrixNaiveBase<double, int>*, allocator<adelie_core::matrix::MatrixNaiveBase<double, int>*> >&, long unsigned int&}]’
133 | ::new(static_cast<void*>(__p)) _Tp(std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/16/bits/alloc_traits.h:845:19: required from ‘static void std::allocator_traits<std::allocator<void> >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = adelie_core::matrix::MatrixNaiveCConcatenate<double, int>; _Args = {std::vector<adelie_core::matrix::MatrixNaiveBase<double, int>*, std::allocator<adelie_core::matrix::MatrixNaiveBase<double, int>*> >&, long unsigned int&}; allocator_type = std::allocator<void>]’
845 | { std::_Construct(__p, std::forward<_Args>(__args)...); }
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/16/bits/shared_ptr_base.h:670:39: required from ‘std::_Sp_counted_ptr_inplace<_Tp, _Alloc, _Lp>::_Sp_counted_ptr_inplace(_Alloc, _Args&& ...) [with _Args = {std::vector<adelie_core::matrix::MatrixNaiveBase<double, int>*, std::allocator<adelie_core::matrix::MatrixNaiveBase<double, int>*> >&, long unsigned int&}; _Tp = adelie_core::matrix::MatrixNaiveCConcatenate<double, int>; _Alloc = std::allocator<void>; __gnu_cxx::_Lock_policy _Lp = __gnu_cxx::_S_atomic]’
670 | allocator_traits<_Alloc>::construct(__a, _M_ptr(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
671 | std::forward<_Args>(__args)...); // might throw
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/16/bits/shared_ptr_base.h:1036:16: required from ‘std::__shared_count<_Lp>::__shared_count(_Tp*&, std::_Sp_alloc_shared_tag<_Alloc>, _Args&& ...) [with _Tp = adelie_core::matrix::MatrixNaiveCConcatenate<double, int>; _Alloc = std::allocator<void>; _Args = {std::vector<adelie_core::matrix::MatrixNaiveBase<double, int>*, std::allocator<adelie_core::matrix::MatrixNaiveBase<double, int>*> >&, long unsigned int&}; __gnu_cxx::_Lock_policy _Lp = __gnu_cxx::_S_atomic]’
1036 | auto __pi = ::new (__mem)
| ^~~~~~~~~~~~~
1037 | _Sp_cp_type(__a._M_a, std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/16/bits/shared_ptr_base.h:1812:14: required from ‘std::__shared_ptr<_Tp, _Lp>::__shared_ptr(std::_Sp_alloc_shared_tag<_Tp>, _Args&& ...) [with _Alloc = std::allocator<void>; _Args = {std::vector<adelie_core::matrix::MatrixNaiveBase<double, int>*, std::allocator<adelie_core::matrix::MatrixNaiveBase<double, int>*> >&, long unsigned int&}; _Tp = adelie_core::matrix::MatrixNaiveCConcatenate<double, int>; __gnu_cxx::_Lock_policy _Lp = __gnu_cxx::_S_atomic]’
1812 | : _M_ptr(), _M_refcount(_M_ptr, __tag, std::forward<_Args>(__args)...)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/16/bits/shared_ptr.h:463:59: required from ‘std::shared_ptr<_Tp>::shared_ptr(std::_Sp_alloc_shared_tag<_Tp>, _Args&& ...) [with _Alloc = std::allocator<void>; _Args = {std::vector<adelie_core::matrix::MatrixNaiveBase<double, int>*, std::allocator<adelie_core::matrix::MatrixNaiveBase<double, int>*> >&, long unsigned int&}; _Tp = adelie_core::matrix::MatrixNaiveCConcatenate<double, int>]’
463 | : __shared_ptr<_Tp>(__tag, std::forward<_Args>(__args)...)
| ^
/usr/include/c++/16/bits/shared_ptr.h:1065:14: required from ‘std::shared_ptr<typename std::enable_if<(! std::is_array<_Tp>::value), _Tp>::type> std::make_shared(_Args&& ...) [with _Tp = adelie_core::matrix::MatrixNaiveCConcatenate<double, int>; _Args = {vector<adelie_core::matrix::MatrixNaiveBase<double, int>*, allocator<adelie_core::matrix::MatrixNaiveBase<double, int>*> >&, long unsigned int&}; typename enable_if<(! is_array<_Tp>::value), _Tp>::type = adelie_core::matrix::MatrixNaiveCConcatenate<double, int>]’
1065 | return shared_ptr<_Tp>(_Sp_alloc_shared_tag<_Alloc>{__a},
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1066 | std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rcpp_matrix.h:749:1: required from ‘RMatrixNaiveCConcatenate64::RMatrixNaiveCConcatenate64(Args&& ...) [with Args = {std::vector<adelie_core::matrix::MatrixNaiveBase<double, int>*, std::allocator<adelie_core::matrix::MatrixNaiveBase<double, int>*> >&, long unsigned int&}]’
41 | bname(std::make_shared<aname>(std::forward<Args>(args)...)) \
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rcpp_matrix.cpp:107:68: required from here
107 | return new r_matrix_naive_cconcatenate_64_t(mat_list, n_threads);
| ^
../inst/adelie/adelie/src/include/adelie_core/matrix/matrix_naive_concatenate.ipp:47:12: warning: variable ‘begin’ set but not used [-Wunused-but-set-variable=]
47 | size_t begin = 0;
| ^~~~~
../inst/adelie/adelie/src/include/adelie_core/matrix/matrix_naive_concatenate.ipp: In instantiation of ‘static auto adelie_core::matrix::MatrixNaiveRConcatenate<ValueType, IndexType>::init_outer(const std::vector<adelie_core::matrix::MatrixNaiveBase<ValueType, IndexType>*>&) [with ValueType = double; IndexType = int]’:
../inst/adelie/adelie/src/include/adelie_core/matrix/matrix_naive_concatenate.ipp:416:22: required from ‘adelie_core::matrix::MatrixNaiveRConcatenate<ValueType, IndexType>::MatrixNaiveRConcatenate(const std::vector<adelie_core::matrix::MatrixNaiveBase<ValueType, IndexType>*>&, size_t) [with ValueType = double; IndexType = int; size_t = long unsigned int]’
416 | _outer(init_outer(mat_list)),
| ~~~~~~~~~~^~~~~~~~~~
/usr/include/c++/16/bits/stl_construct.h:133:7: required from ‘void std::_Construct(_Tp*, _Args&& ...) [with _Tp = adelie_core::matrix::MatrixNaiveRConcatenate<double, int>; _Args = {vector<adelie_core::matrix::MatrixNaiveBase<double, int>*, allocator<adelie_core::matrix::MatrixNaiveBase<double, int>*> >&, long unsigned int&}]’
133 | ::new(static_cast<void*>(__p)) _Tp(std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/16/bits/alloc_traits.h:845:19: required from ‘static void std::allocator_traits<std::allocator<void> >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = adelie_core::matrix::MatrixNaiveRConcatenate<double, int>; _Args = {std::vector<adelie_core::matrix::MatrixNaiveBase<double, int>*, std::allocator<adelie_core::matrix::MatrixNaiveBase<double, int>*> >&, long unsigned int&}; allocator_type = std::allocator<void>]’
845 | { std::_Construct(__p, std::forward<_Args>(__args)...); }
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/16/bits/shared_ptr_base.h:670:39: required from ‘std::_Sp_counted_ptr_inplace<_Tp, _Alloc, _Lp>::_Sp_counted_ptr_inplace(_Alloc, _Args&& ...) [with _Args = {std::vector<adelie_core::matrix::MatrixNaiveBase<double, int>*, std::allocator<adelie_core::matrix::MatrixNaiveBase<double, int>*> >&, long unsigned int&}; _Tp = adelie_core::matrix::MatrixNaiveRConcatenate<double, int>; _Alloc = std::allocator<void>; __gnu_cxx::_Lock_policy _Lp = __gnu_cxx::_S_atomic]’
670 | allocator_traits<_Alloc>::construct(__a, _M_ptr(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
671 | std::forward<_Args>(__args)...); // might throw
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/16/bits/shared_ptr_base.h:1036:16: required from ‘std::__shared_count<_Lp>::__shared_count(_Tp*&, std::_Sp_alloc_shared_tag<_Alloc>, _Args&& ...) [with _Tp = adelie_core::matrix::MatrixNaiveRConcatenate<double, int>; _Alloc = std::allocator<void>; _Args = {std::vector<adelie_core::matrix::MatrixNaiveBase<double, int>*, std::allocator<adelie_core::matrix::MatrixNaiveBase<double, int>*> >&, long unsigned int&}; __gnu_cxx::_Lock_policy _Lp = __gnu_cxx::_S_atomic]’
1036 | auto __pi = ::new (__mem)
| ^~~~~~~~~~~~~
1037 | _Sp_cp_type(__a._M_a, std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/16/bits/shared_ptr_base.h:1812:14: required from ‘std::__shared_ptr<_Tp, _Lp>::__shared_ptr(std::_Sp_alloc_shared_tag<_Tp>, _Args&& ...) [with _Alloc = std::allocator<void>; _Args = {std::vector<adelie_core::matrix::MatrixNaiveBase<double, int>*, std::allocator<adelie_core::matrix::MatrixNaiveBase<double, int>*> >&, long unsigned int&}; _Tp = adelie_core::matrix::MatrixNaiveRConcatenate<double, int>; __gnu_cxx::_Lock_policy _Lp = __gnu_cxx::_S_atomic]’
1812 | : _M_ptr(), _M_refcount(_M_ptr, __tag, std::forward<_Args>(__args)...)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/16/bits/shared_ptr.h:463:59: required from ‘std::shared_ptr<_Tp>::shared_ptr(std::_Sp_alloc_shared_tag<_Tp>, _Args&& ...) [with _Alloc = std::allocator<void>; _Args = {std::vector<adelie_core::matrix::MatrixNaiveBase<double, int>*, std::allocator<adelie_core::matrix::MatrixNaiveBase<double, int>*> >&, long unsigned int&}; _Tp = adelie_core::matrix::MatrixNaiveRConcatenate<double, int>]’
463 | : __shared_ptr<_Tp>(__tag, std::forward<_Args>(__args)...)
| ^
/usr/include/c++/16/bits/shared_ptr.h:1065:14: required from ‘std::shared_ptr<typename std::enable_if<(! std::is_array<_Tp>::value), _Tp>::type> std::make_shared(_Args&& ...) [with _Tp = adelie_core::matrix::MatrixNaiveRConcatenate<double, int>; _Args = {vector<adelie_core::matrix::MatrixNaiveBase<double, int>*, allocator<adelie_core::matrix::MatrixNaiveBase<double, int>*> >&, long unsigned int&}; typename enable_if<(! is_array<_Tp>::value), _Tp>::type = adelie_core::matrix::MatrixNaiveRConcatenate<double, int>]’
1065 | return shared_ptr<_Tp>(_Sp_alloc_shared_tag<_Alloc>{__a},
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1066 | std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rcpp_matrix.h:750:1: required from ‘RMatrixNaiveRConcatenate64::RMatrixNaiveRConcatenate64(Args&& ...) [with Args = {std::vector<adelie_core::matrix::MatrixNaiveBase<double, int>*, std::allocator<adelie_core::matrix::MatrixNaiveBase<double, int>*> >&, long unsigned int&}]’
41 | bname(std::make_shared<aname>(std::forward<Args>(args)...)) \
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rcpp_matrix.cpp:118:68: required from here
118 | return new r_matrix_naive_rconcatenate_64_t(mat_list, n_threads);
| ^
../inst/adelie/adelie/src/include/adelie_core/matrix/matrix_naive_concatenate.ipp:398:12: warning: variable ‘begin’ set but not used [-Wunused-but-set-variable=]
398 | size_t begin = 0;
| ^~~~~
g++ -std=gnu++17 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -I../inst/adelie/adelie/src/include -DEIGEN_PERMANENTLY_DISABLE_STUPID_WARNINGS -I'/data/localhost/ripley/R/test-dev/Rcpp/include' -I'/data/localhost/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c rcpp_matrix_utils_blas.cpp -o rcpp_matrix_utils_blas.o
g++ -std=gnu++17 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -I../inst/adelie/adelie/src/include -DEIGEN_PERMANENTLY_DISABLE_STUPID_WARNINGS -I'/data/localhost/ripley/R/test-dev/Rcpp/include' -I'/data/localhost/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c rcpp_solver.cpp -o rcpp_solver.o
g++ -std=gnu++17 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -I../inst/adelie/adelie/src/include -DEIGEN_PERMANENTLY_DISABLE_STUPID_WARNINGS -I'/data/localhost/ripley/R/test-dev/Rcpp/include' -I'/data/localhost/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c rcpp_state.cpp -o rcpp_state.o
In file included from /data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/Core:337,
from /data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/Dense:1,
from /data/localhost/ripley/R/test-dev/RcppEigen/include/RcppEigenForward.h:28,
from /data/localhost/ripley/R/test-dev/RcppEigen/include/RcppEigen.h:25,
from decl.h:3,
from rcpp_solver.cpp:1:
/data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/products/SelfadjointMatrixVector.h: In function ‘static void Eigen::internal::selfadjoint_product_impl<Lhs, LhsMode, false, Rhs, 0, true>::run(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>; Lhs = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; int LhsMode = 17; Rhs = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >]’:
/data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/products/SelfadjointMatrixVector.h:229:7: warning: ‘result’ may be used uninitialized [-Wmaybe-uninitialized]
227 | internal::selfadjoint_matrix_vector_product<Scalar, Index, (internal::traits<ActualLhsTypeCleaned>::Flags&RowMajorBit) ? RowMajor : ColMajor,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
228 | int(LhsUpLo), bool(LhsBlasTraits::NeedToConjugate), bool(RhsBlasTraits::NeedToConjugate)>::run
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
229 | (
| ^
230 | lhs.rows(), // size
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
231 | &lhs.coeffRef(0,0), lhs.outerStride(), // lhs info
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
232 | actualRhsPtr, // rhs info
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
233 | actualDestPtr, // result info
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
234 | actualAlpha // scale factor
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
235 | );
| ~
/data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/products/SelfadjointMatrixVector.h:41:6: note: by argument 4 of type ‘const double*’ to ‘static void Eigen::internal::selfadjoint_matrix_vector_product<Scalar, Index, StorageOrder, UpLo, ConjugateLhs, ConjugateRhs, Version>::run(Index, const Scalar*, Index, const Scalar*, Scalar*, Scalar) [with Scalar = double; Index = long int; int StorageOrder = 0; int UpLo = 1; bool ConjugateLhs = false; bool ConjugateRhs = false; int Version = 0]’ declared here
41 | void selfadjoint_matrix_vector_product<Scalar,Index,StorageOrder,UpLo,ConjugateLhs,ConjugateRhs,Version>::run(
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/Core:341:
/data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h: In function ‘static void Eigen::internal::trmv_selector<Mode, 1>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >; int Mode = 6]’:
/data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: ‘result’ may be used uninitialized [-Wmaybe-uninitialized]
327 | internal::triangular_matrix_vector_product
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
328 | <Index,Mode,
| ~~~~~~~~~~~~
329 | LhsScalar, LhsBlasTraits::NeedToConjugate,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
330 | RhsScalar, RhsBlasTraits::NeedToConjugate,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
331 | RowMajor>
| ~~~~~~~~~
332 | ::run(actualLhs.rows(),actualLhs.cols(),
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
333 | actualLhs.data(),actualLhs.outerStride(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
334 | actualRhsPtr,1,
| ~~~~~~~~~~~~~~~
335 | dest.data(),dest.innerStride(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
336 | actualAlpha);
| ~~~~~~~~~~~~
/data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type ‘const double*’ to ‘static void Eigen::internal::triangular_matrix_vector_product<Index, Mode, LhsScalar, ConjLhs, RhsScalar, ConjRhs, 1, Version>::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = double; bool ConjLhs = false; RhsScalar = double; bool ConjRhs = false; int Version = 0]’ declared here
105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product<Index,Mode,LhsScalar,ConjLhs,RhsScalar,ConjRhs,RowMajor,Version>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/Core:337,
from /data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/Dense:1,
from /data/localhost/ripley/R/test-dev/RcppEigen/include/RcppEigenForward.h:28,
from /data/localhost/ripley/R/test-dev/RcppEigen/include/RcppEigen.h:25,
from decl.h:3,
from rcpp_state.h:2,
from rcpp_state.cpp:1:
/data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/products/SelfadjointMatrixVector.h: In function ‘static void Eigen::internal::selfadjoint_product_impl<Lhs, LhsMode, false, Rhs, 0, true>::run(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>; Lhs = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; int LhsMode = 17; Rhs = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >]’:
/data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/products/SelfadjointMatrixVector.h:229:7: warning: ‘result’ may be used uninitialized [-Wmaybe-uninitialized]
227 | internal::selfadjoint_matrix_vector_product<Scalar, Index, (internal::traits<ActualLhsTypeCleaned>::Flags&RowMajorBit) ? RowMajor : ColMajor,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
228 | int(LhsUpLo), bool(LhsBlasTraits::NeedToConjugate), bool(RhsBlasTraits::NeedToConjugate)>::run
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
229 | (
| ^
230 | lhs.rows(), // size
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
231 | &lhs.coeffRef(0,0), lhs.outerStride(), // lhs info
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
232 | actualRhsPtr, // rhs info
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
233 | actualDestPtr, // result info
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
234 | actualAlpha // scale factor
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
235 | );
| ~
/data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/products/SelfadjointMatrixVector.h:41:6: note: by argument 4 of type ‘const double*’ to ‘static void Eigen::internal::selfadjoint_matrix_vector_product<Scalar, Index, StorageOrder, UpLo, ConjugateLhs, ConjugateRhs, Version>::run(Index, const Scalar*, Index, const Scalar*, Scalar*, Scalar) [with Scalar = double; Index = long int; int StorageOrder = 0; int UpLo = 1; bool ConjugateLhs = false; bool ConjugateRhs = false; int Version = 0]’ declared here
41 | void selfadjoint_matrix_vector_product<Scalar,Index,StorageOrder,UpLo,ConjugateLhs,ConjugateRhs,Version>::run(
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/Core:341:
/data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h: In function ‘static void Eigen::internal::trmv_selector<Mode, 1>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >; int Mode = 6]’:
/data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: ‘result’ may be used uninitialized [-Wmaybe-uninitialized]
327 | internal::triangular_matrix_vector_product
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
328 | <Index,Mode,
| ~~~~~~~~~~~~
329 | LhsScalar, LhsBlasTraits::NeedToConjugate,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
330 | RhsScalar, RhsBlasTraits::NeedToConjugate,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
331 | RowMajor>
| ~~~~~~~~~
332 | ::run(actualLhs.rows(),actualLhs.cols(),
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
333 | actualLhs.data(),actualLhs.outerStride(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
334 | actualRhsPtr,1,
| ~~~~~~~~~~~~~~~
335 | dest.data(),dest.innerStride(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
336 | actualAlpha);
| ~~~~~~~~~~~~
/data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type ‘const double*’ to ‘static void Eigen::internal::triangular_matrix_vector_product<Index, Mode, LhsScalar, ConjLhs, RhsScalar, ConjRhs, 1, Version>::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = double; bool ConjLhs = false; RhsScalar = double; bool ConjRhs = false; int Version = 0]’ declared here
105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product<Index,Mode,LhsScalar,ConjLhs,RhsScalar,ConjRhs,RowMajor,Version>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -std=gnu++17 -shared -L/usr/local/lib64 -o adelie.so RcppExports.o rcpp_configs.o rcpp_constraint.o rcpp_glm.o rcpp_io.o rcpp_matrix.o rcpp_matrix_utils_blas.o rcpp_solver.o rcpp_state.o -fopenmp
make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-devel/adelie/src'
make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-devel/adelie/src'
make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-devel/adelie/src'
installing to /data/localhost/ripley/R/packages/tests-devel/adelie.Rcheck/00LOCK-adelie/00new/adelie/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (adelie)