Install log for 'abcpp'

* installing *source* package ‘abcpp’ ...
** this is package ‘abcpp’ version ‘1.0.0’
** package ‘abcpp’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
specified C++17
using C++ compiler: ‘g++ (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7)’
using C++17
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/abcpp/src'
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c wrapper.cpp -o wrapper.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c ../inst/include/abcpp/detail/src/abc.cpp -o abc.o
In file included from /usr/include/c++/15/x86_64-redhat-linux/bits/c++allocator.h:33,
                 from /usr/include/c++/15/bits/allocator.h:46,
                 from /usr/include/c++/15/string:45,
                 from /usr/include/c++/15/stdexcept:41,
                 from ../inst/include/abcpp/matrix.hpp:4,
                 from ../inst/include/abcpp/abc.hpp:3,
                 from ../inst/include/abcpp/detail/src/abc.cpp:1:
In member function ‘void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = abcpp::transform]’,
    inlined from ‘static void std::allocator_traits<std::allocator<_CharT> >::deallocate(allocator_type&, pointer, size_type) [with _Tp = abcpp::transform]’ at /usr/include/c++/15/bits/alloc_traits.h:649:23,
    inlined from ‘void std::_Vector_base<_Tp, _Alloc>::_M_deallocate(pointer, std::size_t) [with _Tp = abcpp::transform; _Alloc = std::allocator<abcpp::transform>]’ at /usr/include/c++/15/bits/stl_vector.h:396:19,
    inlined from ‘void std::_Vector_base<_Tp, _Alloc>::_M_deallocate(pointer, std::size_t) [with _Tp = abcpp::transform; _Alloc = std::allocator<abcpp::transform>]’ at /usr/include/c++/15/bits/stl_vector.h:392:7,
    inlined from ‘std::vector<_Tp, _Alloc>::_Guard_alloc::~_Guard_alloc() [with _Tp = abcpp::transform; _Alloc = std::allocator<abcpp::transform>]’ at /usr/include/c++/15/bits/stl_vector.h:1883:27,
    inlined from ‘void std::vector<_Tp, _Alloc>::_M_realloc_append(_Args&& ...) [with _Args = {abcpp::transform}; _Tp = abcpp::transform; _Alloc = std::allocator<abcpp::transform>]’ at /usr/include/c++/15/bits/vector.tcc:640:7,
    inlined from ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {abcpp::transform}; _Tp = abcpp::transform; _Alloc = std::allocator<abcpp::transform>]’ at /usr/include/c++/15/bits/vector.tcc:123:21,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = abcpp::transform; _Alloc = std::allocator<abcpp::transform>]’ at /usr/include/c++/15/bits/stl_vector.h:1434:21,
    inlined from ‘std::vector<abcpp::transform> abcpp::{anonymous}::normalized_transforms(const abcpp::AbcOptions&, std::size_t)’ at ../inst/include/abcpp/detail/src/abc.cpp:33:29:
/usr/include/c++/15/bits/new_allocator.h:172:66: warning: ‘void operator delete(void*, std::size_t)’ called on pointer ‘<unknown>’ with nonzero offset [1, 9223372036854775807] [-Wfree-nonheap-object]
  172 |         _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n));
      |                                                                  ^
In member function ‘_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = abcpp::transform]’,
    inlined from ‘static _Tp* std::allocator_traits<std::allocator<_CharT> >::allocate(allocator_type&, size_type) [with _Tp = abcpp::transform]’ at /usr/include/c++/15/bits/alloc_traits.h:614:28,
    inlined from ‘std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = abcpp::transform; _Alloc = std::allocator<abcpp::transform>]’ at /usr/include/c++/15/bits/stl_vector.h:387:33,
    inlined from ‘void std::_Vector_base<_Tp, _Alloc>::_M_create_storage(std::size_t) [with _Tp = abcpp::transform; _Alloc = std::allocator<abcpp::transform>]’ at /usr/include/c++/15/bits/stl_vector.h:405:44,
    inlined from ‘std::_Vector_base<_Tp, _Alloc>::_Vector_base(std::size_t, const allocator_type&) [with _Tp = abcpp::transform; _Alloc = std::allocator<abcpp::transform>]’ at /usr/include/c++/15/bits/stl_vector.h:341:26,
    inlined from ‘std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = abcpp::transform; _Alloc = std::allocator<abcpp::transform>]’ at /usr/include/c++/15/bits/stl_vector.h:633:61,
    inlined from ‘std::vector<abcpp::transform> abcpp::{anonymous}::normalized_transforms(const abcpp::AbcOptions&, std::size_t)’ at ../inst/include/abcpp/detail/src/abc.cpp:31:49:
/usr/include/c++/15/bits/new_allocator.h:151:73: note: returned from ‘void* operator new(std::size_t)’
  151 |         return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp)));
      |                                                                         ^
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c ../inst/include/abcpp/detail/src/linear_algebra.cpp -o linear_algebra.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c ../inst/include/abcpp/detail/src/matrix.cpp -o matrix.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c ../inst/include/abcpp/detail/src/options.cpp -o options.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c ../inst/include/abcpp/detail/src/reduction.cpp -o reduction.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c ../inst/include/abcpp/detail/src/result.cpp -o result.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c ../inst/include/abcpp/detail/src/statistics.cpp -o statistics.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c ../inst/include/abcpp/detail/src/summary.cpp -o summary.o
g++ -std=gnu++17 -shared -L/usr/local/lib64 -o abcpp.so wrapper.o abc.o linear_algebra.o matrix.o options.o reduction.o result.o statistics.o summary.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/abcpp/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/abcpp/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/abcpp/src'
installing to /data/gannet/ripley/R/packages/tests-devel/abcpp.Rcheck/00LOCK-abcpp/00new/abcpp/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (abcpp)