* installing *source* package ‘a5R’ ...
** this is package ‘a5R’ version ‘0.2.0’
** package ‘a5R’ successfully unpacked and MD5 sums checked
** using staged installation
Using cargo 1.93.1 (083ac5135 2025-12-15) (Fedora 1.93.1-1.fc42)
Using rustc 1.93.1 (01f6ddf75 2026-02-11) (Fedora 1.93.1-1.fc42)
Building for CRAN.
Writing `src/Makevars`.
`tools/config.R` has finished.
** libs
using C compiler: ‘gcc (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/a5R/src'
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c entrypoint.c -o entrypoint.o
if [ -f ./rust/vendor.tar.xz ]; then \
tar xf rust/vendor.tar.xz && \
mkdir -p /data/gannet/ripley/R/packages/tests-devel/a5R/src/.cargo && \
cp rust/vendor-config.toml /data/gannet/ripley/R/packages/tests-devel/a5R/src/.cargo/config.toml; \
fi
export CARGO_HOME=/data/gannet/ripley/R/packages/tests-devel/a5R/src/.cargo && \
export PATH="/data/gannet/ripley/bin:/usr/local/bin:/usr/local/texbin:/usr/sbin:.:/data/gannet/ripley/bin:/usr/local/texbin:/usr/local/bin:/usr/sbin:/usr/lib64/qt-3.3/bin:/usr/share/Modules/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/usr/lib64/openmpi/bin:/usr/lib64/openmpi/bin:/data/gannet/ripley/.cargo/bin" && \
RUSTFLAGS=" --print=native-static-libs" cargo build -j 2 --offline --lib --release --manifest-path=./rust/Cargo.toml --target-dir ./rust/target
warning: a `-j` argument was passed to Cargo but Cargo is also configured with an external jobserver in its environment, ignoring the `-j` parameter
Compiling libm v0.2.16
Compiling autocfg v1.5.0
Compiling proc-macro2 v1.0.106
Compiling unicode-ident v1.0.24
Compiling quote v1.0.44
Compiling byteorder v1.5.0
Compiling libc v0.2.182
Compiling heapless v0.8.0
Compiling stable_deref_trait v1.2.1
Compiling zerocopy v0.8.39
Compiling crossbeam-utils v0.8.21
Compiling smallvec v1.15.1
Compiling cfg-if v1.0.4
Compiling extendr-ffi v0.8.1
Compiling thiserror v1.0.69
Compiling rayon-core v1.13.0
Compiling paste v1.0.15
Compiling extendr-api v0.8.1
Compiling i_key_sort v0.6.0
Compiling log v0.4.29
Compiling i_tree v0.16.0
Compiling hash32 v0.3.1
Compiling sif-itree v0.4.0
Compiling float_next_after v1.0.0
Compiling either v1.15.0
Compiling lazy_static v1.5.0
Compiling robust v1.2.0
Compiling once_cell v1.21.3
Compiling a5 v0.7.0
Compiling num-traits v0.2.19
Compiling crossbeam-epoch v0.9.18
Compiling crossbeam-deque v0.8.6
Compiling syn v2.0.116
Compiling i_float v1.15.0
Compiling geographiclib-rs v0.2.7
Compiling getrandom v0.2.17
Compiling rand_core v0.6.4
Compiling i_shape v1.14.0
Compiling i_overlay v4.0.7
Compiling rayon v1.11.0
Compiling rstar v0.12.2
Compiling approx v0.5.1
Compiling geo-types v0.7.18
Compiling geo-traits v0.3.0
Compiling ppv-lite86 v0.2.21
Compiling rand_chacha v0.3.1
Compiling rand v0.8.5
Compiling thiserror-impl v1.0.69
Compiling extendr-macros v0.8.1
Compiling geo v0.32.0
Compiling wkt v0.14.0
Compiling a5R v0.1.0 (/data/gannet/ripley/R/packages/tests-devel/a5R/src/rust)
warning: crate `a5R` should have a snake case name
|
= help: convert the identifier to snake case: `a5_r`
= note: `#[warn(non_snake_case)]` (part of `#[warn(nonstandard_style)]`) on by default
note: link against the following native artifacts when linking against this static library. The order and any duplication can be significant on some platforms.
note: native-static-libs: -lc -lm -lrt -lpthread -lR -lgcc_s -lutil -lrt -lpthread -lm -ldl -lc
warning: `a5R` (lib) generated 1 warning
Finished `release` profile [optimized] target(s) in 1m 52s
# Always clean up CARGOTMP
rm -Rf /data/gannet/ripley/R/packages/tests-devel/a5R/src/.cargo;
gcc -shared -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -fpic -L/usr/local/lib64 -o a5R.so entrypoint.o -L./rust/target/release -la5R
rm -Rf /data/gannet/ripley/R/packages/tests-devel/a5R/src/.cargo /data/gannet/ripley/R/packages/tests-devel/a5R/src/vendor ./rust/target
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/a5R/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/a5R/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/a5R/src'
installing to /data/gannet/ripley/R/packages/tests-devel/a5R.Rcheck/00LOCK-a5R/00new/a5R/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (a5R)